neurogenomics/rworkflows issues and pull requests

#133 - workflow-telemetry-action says repository not found

Issue - State: open - Opened by vvyas-arcus about 1 month ago
Labels: bug

#132 - Add support for CODECOV_TOKEN

Pull Request - State: closed - Opened by HDash about 2 months ago - 1 comment

#131 - Install quarto >= 1.5 to allow rendering qmd vignettes

Pull Request - State: open - Opened by js2264 2 months ago - 1 comment

#130 - Bioc rworkflows fail

Issue - State: closed - Opened by TuomasBorman 5 months ago - 6 comments
Labels: bug, GitHub Actions

#129 - ‘ttservice’ 0.2.2 was found, but >= 0.3.6 is required. But 0.4 is on CRAN

Issue - State: closed - Opened by stemangiola 8 months ago - 2 comments
Labels: bug

#128 - workflow-telemetry-action: `Error: EACCES: permission denied`

Issue - State: open - Opened by bschilder 8 months ago - 4 comments
Labels: GitHub Actions, bug in dependency

#127 - Apply for BNA Credibility Prize

Issue - State: closed - Opened by bschilder 8 months ago

#126 - Consider creating an R package ranking system

Issue - State: open - Opened by bschilder 9 months ago - 1 comment
Labels: documentation, enhancement

#125 - Error in Bioc devel workflow

Issue - State: closed - Opened by TuomasBorman 9 months ago - 5 comments
Labels: bug

#124 - CRAN: fix noLD errors

Issue - State: closed - Opened by bschilder 9 months ago - 6 comments
Labels: bug, CRAN

#123 - Write Research Communities blog post

Issue - State: open - Opened by bschilder 10 months ago - 1 comment
Labels: publication

#122 - Apply for open journal funding

Issue - State: closed - Opened by bschilder 10 months ago - 3 comments
Labels: publication

#121 - Rearrange caching steps to optimise speed

Issue - State: open - Opened by bschilder 11 months ago - 1 comment
Labels: enhancement, GitHub Actions

#120 - Modified Dockerfile keeps failing (dev branch)

Issue - State: open - Opened by bschilder 11 months ago
Labels: bug, GitHub Actions, 🐳 Docker

#119 - Make repo owner lowercase

Issue - State: closed - Opened by bschilder 11 months ago - 1 comment
Labels: bug, 🐳 Docker

#118 - Add functions to standardise system dependencies

Issue - State: open - Opened by bschilder 11 months ago
Labels: documentation, enhancement, GitHub Actions

#117 - I get Package suggested but not available: 'EGSEA'

Issue - State: open - Opened by stemangiola 11 months ago - 3 comments
Labels: GitHub Actions, bug in dependency

#116 - Programmatically list arguments in each subaction

Issue - State: open - Opened by bschilder 11 months ago
Labels: documentation, enhancement, GitHub Actions

#115 - Codecov upload fails

Issue - State: closed - Opened by bschilder 11 months ago - 3 comments
Labels: bug, GitHub Actions

#114 - Manuscript: address neccessary corrections

Issue - State: closed - Opened by bschilder 11 months ago - 6 comments
Labels: publication

#113 - Supply GITHUB token to package check steps

Issue - State: closed - Opened by bschilder 11 months ago
Labels: bug, GitHub Actions

#112 - [macOS] Some tests fail [ FAIL 5 | WARN 0 | SKIP 0 | PASS 177 ]

Issue - State: closed - Opened by barracuda156 11 months ago - 12 comments
Labels: bug

#111 - Roate hex

Pull Request - State: closed - Opened by bschilder 11 months ago

#110 - Fix for #109

Pull Request - State: closed - Opened by bschilder 11 months ago

#109 - Docker: invalid reference format: repository name must be lowercase

Issue - State: closed - Opened by bschilder 11 months ago - 1 comment
Labels: bug

#108 - Omit specific packages during installation

Issue - State: open - Opened by bschilder 11 months ago - 1 comment
Labels: enhancement, GitHub Actions

#107 - Upgrade to 1.0.0

Pull Request - State: closed - Opened by bschilder 11 months ago - 1 comment

#106 - Add Rstudio interface to Codespace dev container

Issue - State: open - Opened by bschilder 11 months ago
Labels: enhancement, 🐳 Docker

#105 - v1.0.0

Pull Request - State: closed - Opened by bschilder 11 months ago

#104 - Let users customise .Rprofile

Issue - State: closed - Opened by bschilder 11 months ago
Labels: enhancement, GitHub Actions

#103 - Explore options for interactive debugging

Issue - State: open - Opened by bschilder 11 months ago - 5 comments
Labels: documentation, enhancement, help wanted, GitHub Actions

#102 - Fix miniforge

Pull Request - State: closed - Opened by bschilder 11 months ago

#101 - Warning: [@octokit/auth-action] The token variable is specified more than once

Issue - State: closed - Opened by bschilder 11 months ago - 3 comments
Labels: bug, GitHub Actions

#100 - Assign `rworkflows` code a DOI

Issue - State: closed - Opened by bschilder 11 months ago - 1 comment
Labels: documentation, enhancement, publication

#99 - Sync Docker vignettes with registry

Issue - State: closed - Opened by bschilder 11 months ago
Labels: documentation

#98 - Error: Error: versionSpec parameter is required

Issue - State: closed - Opened by bschilder 11 months ago - 2 comments
Labels: bug, GitHub Actions, CRAN

#97 - Free disk space

Issue - State: closed - Opened by bschilder 11 months ago - 3 comments
Labels: enhancement, GitHub Actions

#96 - Get code coverage back up

Issue - State: closed - Opened by bschilder 11 months ago
Labels: enhancement, publication

#95 - Upgrade to 0.99.14

Pull Request - State: closed - Opened by bschilder 11 months ago - 13 comments

#94 - Reach out to relevant organisations

Issue - State: open - Opened by bschilder 11 months ago
Labels: enhancement, help wanted, 🕰️ Longevity 🕰️

#92 - Consider funding/support options

Issue - State: open - Opened by bschilder 12 months ago
Labels: enhancement, help wanted, 🕰️ Longevity 🕰️

#91 - Fix bioc_mentorship_docs

Issue - State: closed - Opened by bschilder 12 months ago - 2 comments
Labels: documentation, publication

#90 - Update dependency network figure

Issue - State: closed - Opened by bschilder 12 months ago - 2 comments
Labels: documentation, publication

#89 - Update rworkflows GHA Marketplace release

Issue - State: closed - Opened by bschilder 12 months ago
Labels: GitHub Actions

#88 - Update manuscript to demo new rworkflows features

Issue - State: closed - Opened by bschilder 12 months ago
Labels: publication

#87 - Address manuscript reviewer comments

Issue - State: closed - Opened by bschilder 12 months ago
Labels: publication

#86 - Force new install of local repo

Issue - State: open - Opened by bschilder 12 months ago - 3 comments
Labels: enhancement

#85 - Support pushing containers to GitHub Container Registry

Issue - State: closed - Opened by bschilder about 1 year ago - 3 comments
Labels: enhancement, GitHub Actions

#84 - Clarify Codecov requirements

Issue - State: closed - Opened by bschilder about 1 year ago - 1 comment
Labels: documentation

#83 - Support `tinytest` unit tests

Issue - State: open - Opened by bschilder about 1 year ago
Labels: enhancement, GitHub Actions

#82 - Push releases to Anaconda Cloud

Issue - State: open - Opened by bschilder about 1 year ago
Labels: enhancement, GitHub Actions, conda

#81 - Upload artefacts

Issue - State: open - Opened by bschilder about 1 year ago
Labels: enhancement, GitHub Actions

#80 - Upload bundled package Releases

Issue - State: open - Opened by bschilder about 1 year ago
Labels: documentation, enhancement, GitHub Actions

#79 - Explore nested GHA inputs

Issue - State: open - Opened by bschilder about 1 year ago
Labels: enhancement, GitHub Actions

#78 - Add step to enable conda envs

Issue - State: open - Opened by bschilder about 1 year ago - 9 comments
Labels: enhancement, GitHub Actions, conda

#77 - CRAN: `renv`-related errors

Issue - State: closed - Opened by bschilder about 1 year ago - 1 comment
Labels: bug, CRAN

#76 - Merge master back into dev

Pull Request - State: closed - Opened by bschilder about 1 year ago

#75 - Merge from dev

Pull Request - State: closed - Opened by bschilder about 1 year ago

#74 - Streamline `use_workflow` for Bioconductor packages

Issue - State: closed - Opened by bschilder about 1 year ago
Labels: documentation, enhancement

#73 - Automatically use latest RSPM

Issue - State: closed - Opened by bschilder about 1 year ago - 5 comments
Labels: enhancement

#72 - `trying to use CRAN without setting a mirror` on mac and windows runners

Issue - State: closed - Opened by AliSajid about 1 year ago - 9 comments
Labels: bug

#71 - skip vignettes when building if run_vignettes: ${{ false }}

Pull Request - State: closed - Opened by js2264 about 1 year ago - 2 comments
Labels: bug, GitHub Actions

#70 - Add tests for rendering Sweave vignettes

Issue - State: closed - Opened by bschilder about 1 year ago - 1 comment
Labels: documentation, enhancement, GitHub Actions

#69 - `! LaTeX Error: Command \@raggedtwoe@everyselectfont undefined.`

Issue - State: open - Opened by bschilder about 1 year ago - 12 comments
Labels: bug, GitHub Actions, bug in dependency

#68 - merge dev with master

Pull Request - State: closed - Opened by bschilder about 1 year ago

#67 - Update docs to reflect PR #66

Pull Request - State: closed - Opened by bschilder about 1 year ago

#66 - Switch to automatically set up GITHUB_TOKEN

Pull Request - State: closed - Opened by js2264 about 1 year ago - 6 comments
Labels: enhancement, GitHub Actions

#65 - CRAN checks: Packages required but not available: 'biocViews', 'BiocPkgTools'

Issue - State: closed - Opened by bschilder about 1 year ago - 11 comments
Labels: bug, CRAN

#64 - CRAN checks: `invalid non-character version specification`

Issue - State: closed - Opened by bschilder about 1 year ago - 1 comment
Labels: bug

#63 - Synergising with other GHA projects

Issue - State: closed - Opened by bschilder about 1 year ago
Labels: enhancement, 🕰️ Longevity 🕰️

#62 - Improve code coverage

Issue - State: closed - Opened by bschilder over 1 year ago
Labels: enhancement

#61 - switch `inputs.runner_os` to `runner.os`

Issue - State: closed - Opened by bschilder over 1 year ago
Labels: enhancement

#60 - "rworkflows_static": incorrect parsing

Issue - State: closed - Opened by bschilder over 1 year ago - 1 comment
Labels: bug

#59 - manually update remotes to github version

Pull Request - State: closed - Opened by js2264 over 1 year ago

#58 - Relevance of using AnVIL

Issue - State: closed - Opened by js2264 over 1 year ago - 4 comments
Labels: bug

#57 - fix: missing bracket

Pull Request - State: closed - Opened by js2264 over 1 year ago

#56 - Windows GHA: `Error: Error: node stack overflow`

Issue - State: closed - Opened by bschilder over 1 year ago - 3 comments
Labels: bug, help wanted, GitHub Actions

#55 - fail early if PAT_GITHUB secret unavailable?

Issue - State: closed - Opened by vjcitn over 1 year ago - 1 comment

#54 - Automatically infer biocViews

Issue - State: closed - Opened by bschilder over 1 year ago
Labels: enhancement

#53 - `Error: Ensure GITHUB_TOKEN has permission "id-token: write".`

Issue - State: closed - Opened by bschilder over 1 year ago - 5 comments
Labels: bug

#52 - Remove `r-lib/actions/setup-r-dependencies`

Issue - State: closed - Opened by bschilder over 1 year ago
Labels: enhancement

#51 - Consider implementing `workflow-telemetry-action`

Issue - State: closed - Opened by bschilder over 1 year ago - 2 comments
Labels: enhancement

#50 - Allows users to choose vignette output type

Issue - State: closed - Opened by bschilder over 1 year ago - 1 comment
Labels: documentation, enhancement

#49 - Move to official github pages deployment action

Issue - State: closed - Opened by bschilder over 1 year ago - 5 comments
Labels: documentation, enhancement

#48 - Reduce depgraph vignette size

Issue - State: closed - Opened by bschilder over 1 year ago - 1 comment
Labels: documentation, enhancement

#47 - Depgraph vignette unreadable font color

Issue - State: closed - Opened by OskarGauffin over 1 year ago - 2 comments
Labels: documentation

#46 - Updated upload-artifact action to v3 to avoid the deprecation warning

Pull Request - State: closed - Opened by AliSajid over 1 year ago - 1 comment
Labels: bug

#45 - Warning about deprecation of nodejs v12

Issue - State: closed - Opened by AliSajid over 1 year ago - 1 comment
Labels: bug

#44 - `use_badges`: fix ` badger::badge_codecov`

Issue - State: closed - Opened by bschilder over 1 year ago - 1 comment
Labels: bug

#43 - `codecov/codecov-action` not uploading reports

Issue - State: closed - Opened by bschilder over 1 year ago - 2 comments
Labels: bug

#42 - rworkflows_static: failing on Linux with `setup-bioc`

Issue - State: closed - Opened by bschilder over 1 year ago - 3 comments
Labels: bug, help wanted

#41 - Update CRAN distribution

Issue - State: closed - Opened by bschilder over 1 year ago - 1 comment
Labels: enhancement

#39 - Create bot to make PRs or Issues

Issue - State: open - Opened by bschilder over 1 year ago - 1 comment
Labels: enhancement

#38 - there is no package called ‘BiocCheck’

Issue - State: closed - Opened by bschilder over 1 year ago - 2 comments
Labels: bug

#37 - Raise time limit for processes

Issue - State: closed - Opened by bschilder almost 2 years ago
Labels: enhancement

#36 - `r-lib/actions/setup-r-dependencies`: `Can't install dependency github::<*>`

Issue - State: closed - Opened by bschilder almost 2 years ago - 1 comment
Labels: bug, GitHub Actions

#35 - Consider using: `r-lib/actions/check-r-package`

Issue - State: open - Opened by bschilder almost 2 years ago
Labels: enhancement

#34 - Automatically add to .Rbuildignore

Issue - State: open - Opened by bschilder almost 2 years ago
Labels: enhancement

#33 - Synchronise R/Bioc versions

Issue - State: closed - Opened by bschilder almost 2 years ago - 3 comments
Labels: enhancement

#32 - pdflatex is not available

Issue - State: closed - Opened by bschilder almost 2 years ago - 3 comments
Labels: bug

GitHub / neurogenomics/rworkflows issues and pull requests