neuroelectro/neuroelectro_org issues and pull requests

#340 - Bump jquery from 1.7.3 to 3.5.0 in /neuroelectro/static/src/DataTables

Pull Request - State: open - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#339 - broken neuronelectro links to modeldb

Issue - State: open - Opened by stripathy over 4 years ago
Labels: bug

#338 - Bump jquery from 1.7.3 to 3.4.1 in /neuroelectro/static/src/DataTables

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#337 - API returns a random list of items when a search key is not found

Issue - State: open - Opened by rgerkin almost 6 years ago
Labels: bug

#336 - Change data dump extension to .tsv

Issue - State: open - Opened by rgerkin over 6 years ago

#335 - Map www to root

Issue - State: closed - Opened by rgerkin over 6 years ago - 2 comments
Labels: bug

#334 - A few missing and incorrect neurolex ids for MOB cells

Issue - State: open - Opened by JustasB about 7 years ago
Labels: bug

#333 - Metadata-based value imputation

Issue - State: open - Opened by rgerkin almost 8 years ago - 1 comment
Labels: enhancement

#332 - Metadata-filtering in the API

Issue - State: open - Opened by rgerkin almost 8 years ago
Labels: enhancement, web interface

#331 - expose data table listing under article metadata view

Issue - State: open - Opened by stripathy almost 8 years ago

#330 - how much extra effort to extract common compounds blocking synapses?

Issue - State: closed - Opened by stripathy almost 8 years ago - 4 comments

#329 - export author first name in neuroelectro dump spreadsheet

Issue - State: closed - Opened by stripathy almost 8 years ago
Labels: enhancement

#328 - consider solution text mining to report 0 if no data found vs missing data

Issue - State: closed - Opened by stripathy almost 8 years ago
Labels: enhancement

#327 - export db function broken after allowing in-table solution metadata

Issue - State: closed - Opened by stripathy almost 8 years ago
Labels: bug

#326 - Add ClampType metadata

Issue - State: open - Opened by dtebaykin almost 8 years ago

#325 - fix mysql server gone away bug on long jobs

Issue - State: closed - Opened by stripathy almost 8 years ago
Labels: bug, ready

#324 - api issue with units

Issue - State: closed - Opened by stripathy almost 8 years ago

#323 - table is not validating, likely cause too big

Issue - State: open - Opened by stripathy about 8 years ago
Labels: bug, ready

#322 - try redownloading articles with failed source ID

Issue - State: open - Opened by stripathy about 8 years ago - 1 comment
Labels: ready

#321 - figure out why ACE isn't currently identifiying article sources

Issue - State: open - Opened by stripathy about 8 years ago
Labels: ready

#320 - check animal age

Issue - State: open - Opened by stripathy about 8 years ago
Labels: ready, curation

#319 - add a field to db to keep track of which articles have already been looked at before adding

Issue - State: closed - Opened by stripathy about 8 years ago
Labels: text-mining

#318 - sag ratio recuration: any way to combine ratio with amplitude?

Issue - State: open - Opened by stripathy about 8 years ago
Labels: curation

#317 - download new articles

Issue - State: closed - Opened by stripathy about 8 years ago

#316 - add new recurators to expert list

Issue - State: open - Opened by stripathy about 8 years ago - 1 comment
Labels: ready

#315 - data table curation pages take too long to load

Issue - State: closed - Opened by stripathy about 8 years ago

#314 - data table review view doesn't show if metadata needs expert

Issue - State: closed - Opened by stripathy about 8 years ago
Labels: bug

#313 - Display metadata when not logged in

Issue - State: closed - Opened by dtebaykin about 8 years ago

#312 - table not rendering colors after metadata submission

Issue - State: closed - Opened by stripathy about 8 years ago - 1 comment

#311 - remove all annotations doesn't remove metadata

Issue - State: closed - Opened by stripathy about 8 years ago - 1 comment
Labels: bug

#310 - add meta properties summarizing multiple properties with different baselines

Issue - State: open - Opened by stripathy about 8 years ago
Labels: web interface

#309 - update animal strain curation guidelines

Issue - State: open - Opened by stripathy about 8 years ago - 1 comment
Labels: ready

#308 - update data for this article

Issue - State: closed - Opened by stripathy about 8 years ago

#307 - add extra strains to reflect commonly used cre mouse lines

Issue - State: open - Opened by stripathy about 8 years ago - 2 comments
Labels: ready

#306 - in csv export, export note for Strain

Issue - State: closed - Opened by stripathy about 8 years ago

#305 - in csv export sheet, update data column names

Issue - State: open - Opened by stripathy about 8 years ago

#304 - update storage location of full texts on kent server

Issue - State: closed - Opened by stripathy about 8 years ago - 4 comments

#303 - export SD info for nedms in API

Issue - State: closed - Opened by stripathy about 8 years ago

#302 - add SD info to DB explicitly

Issue - State: closed - Opened by stripathy about 8 years ago

#301 - in data table validate view, add info on who curated and when

Issue - State: closed - Opened by stripathy about 8 years ago

#300 - Article Full text is displaying "Page not found"

Issue - State: closed - Opened by BrennaL about 8 years ago - 1 comment
Labels: bug, curation

#299 - need to manually edit units in table

Issue - State: closed - Opened by stripathy about 8 years ago

#298 - how to annotate data collected in voltage clamp only

Issue - State: open - Opened by stripathy about 8 years ago

#297 - how to annotate a table with no control without removing all curations from table?

Issue - State: open - Opened by stripathy about 8 years ago

#296 - misparsed table

Issue - State: closed - Opened by stripathy about 8 years ago - 2 comments

#295 - missassociated table to article

Issue - State: open - Opened by stripathy about 8 years ago

#294 - weird issue with wrong table IDs being exported occasionally in csv export

Issue - State: open - Opened by stripathy about 8 years ago

#293 - Calculated SD's are sometimes negative

Issue - State: closed - Opened by dtebaykin about 8 years ago - 1 comment

#292 - Add currently irrelevant article flag

Issue - State: closed - Opened by dtebaykin about 8 years ago

#291 - mine ephys data from this table as pdf

Issue - State: closed - Opened by stripathy about 8 years ago - 1 comment

#290 - Additional sumary stats for low sample size properties using simulated values?

Issue - State: closed - Opened by JustasB about 8 years ago - 24 comments

#289 - set up default filters for listing of tables for curation better

Issue - State: closed - Opened by stripathy over 8 years ago

#288 - use of apostrophe's in notes or text inputs terminates string prematurely

Issue - State: open - Opened by stripathy over 8 years ago
Labels: bug, ready

#287 - Quotation marks in curation interface

Issue - State: closed - Opened by dtebaykin over 8 years ago - 2 comments

#286 - update neuron type curation guidelines

Issue - State: open - Opened by stripathy over 8 years ago

#285 - when curating table metadata, hitting "validate all" doesn't update metadata change

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment

#284 - add data for medial habenula too

Issue - State: open - Opened by stripathy over 8 years ago

#283 - add table for G42 lgn paper

Issue - State: open - Opened by stripathy over 8 years ago

#282 - add known implicit correspondances to neuroNER bridge function

Issue - State: closed - Opened by stripathy over 8 years ago

#281 - add flag to normalization script to force update of val_norm even if existing

Issue - State: open - Opened by stripathy over 8 years ago

#280 - why is adaptation ratio data still mis-normalizing?

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment

#279 - double check that collapsing of rows for same data across tables works

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: bug

#278 - add neuron concepts to dropdown and annotate

Issue - State: open - Opened by stripathy over 8 years ago

#277 - in ephys plots, don't display data for tables which don't contain relevant data

Issue - State: open - Opened by stripathy over 8 years ago

#276 - update neuroelectro prod server and db

Issue - State: closed - Opened by stripathy over 8 years ago

#275 - visualize metadata note in table review function

Issue - State: open - Opened by stripathy over 8 years ago

#274 - check for units in nedm cell, not ecm cell

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment

#273 - add adaptation ratio (other) property

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment

#272 - remove extra hcm objects added to ncms by neuroner processing

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: bug

#271 - neuroner processing seems to add a new concept map on every run

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: bug

#270 - neuroner similarity search fxn should work on ephys trigger

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment

#269 - download and parse new jneurophys articles

Issue - State: closed - Opened by stripathy over 8 years ago

#268 - implement a feature enabling neuron type search

Issue - State: closed - Opened by stripathy over 8 years ago

#267 - neuroelectro curations take longer after addition of neuroNER stuff

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: bug

#266 - add notes for unnormalizable ephys props to notes

Issue - State: closed - Opened by stripathy over 8 years ago

#265 - sort ephys properties in curation dropdown menu

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment
Labels: enhancement, curation

#264 - update ephys range checking to read values from DB

Issue - State: closed - Opened by stripathy over 8 years ago

#263 - double check that converted ephys properties are also in appropriate range

Issue - State: closed - Opened by stripathy over 8 years ago

#262 - add new ephys prop conversion functions to utilize newly split ephys prop types

Issue - State: open - Opened by stripathy over 8 years ago
Labels: in progress

#261 - store neuroner neuron long name annotations in mysql DB

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: enhancement

#260 - writeup docs for getting sherlok/neuroNER installed for neuroelectro repo

Issue - State: open - Opened by stripathy over 8 years ago - 1 comment

#259 - export unnormalized ephys value in spreadsheet export

Issue - State: closed - Opened by stripathy over 8 years ago

#257 - get list of intersecting papers that are in neuroelectro with annotated genotypes from JAX

Issue - State: open - Opened by stripathy over 8 years ago
Labels: curation, do later

#256 - periodically review tables or metadata needing admin review

Issue - State: open - Opened by stripathy over 8 years ago
Labels: in progress, curation

#255 - clean up broken links for user/curation contributions

Issue - State: closed - Opened by stripathy over 8 years ago - 5 comments

#251 - identify when SDs are used to report ephys error

Issue - State: closed - Opened by stripathy over 8 years ago

#237 - tag neuron concept maps for updating based on neuroNER-neuroexpresso comparison

Issue - State: open - Opened by stripathy over 8 years ago

#229 - Fix duplication of AnimalStrains after downloading PLOS articles

Issue - State: open - Opened by stripathy over 8 years ago
Labels: ready, backend, data cleaning

#224 - misassociated table to article

Issue - State: closed - Opened by stripathy over 8 years ago - 1 comment
Labels: bug

#210 - identify all neuron ephys data maps which fall outside of appropriate ranges and flag for review

Issue - State: closed - Opened by stripathy over 8 years ago
Labels: curation

#209 - need to improve export of neuron concept maps with multiple experimental factors

Issue - State: open - Opened by stripathy over 8 years ago - 1 comment
Labels: bug, data cleaning

#201 - check whether patch clamp recordings are perforated-patch clamp

Issue - State: open - Opened by stripathy over 8 years ago
Labels: text-mining, ready, curation, solutions

#188 - add history objects to article metadata curation

Issue - State: open - Opened by stripathy over 8 years ago
Labels: curation

#180 - Make all metadata table specific

Issue - State: open - Opened by dtebaykin over 8 years ago
Labels: do later

#167 - normalize metadata in DB export

Issue - State: open - Opened by stripathy almost 9 years ago

#135 - how should neuron types which are negative for a protein be annotated?

Issue - State: open - Opened by stripathy almost 9 years ago

#132 - refine neuron type curation guidelines to reflect use of transgenic mice

Issue - State: open - Opened by stripathy almost 9 years ago - 1 comment
Labels: curation

#100 - consider making new properties for AP amplitude / AHP amplitude to capture different baselines

Issue - State: closed - Opened by stripathy almost 9 years ago
Labels: data cleaning

#64 - investigate accuracy of ephys property text mining from full text

Issue - State: open - Opened by stripathy almost 9 years ago - 1 comment
Labels: text-mining, do later

#60 - Incorporate curations from undergrad curators into main neuroelectro DB

Issue - State: closed - Opened by stripathy almost 9 years ago

GitHub / neuroelectro/neuroelectro_org issues and pull requests