Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / neurodatawithoutborders/lindi issues and pull requests

#102 - important: chunking bug in dandi NWB file

Issue - State: closed - Opened by magland 2 months ago - 2 comments

#102 - important: chunking bug in dandi NWB file

Issue - State: closed - Opened by magland 2 months ago - 2 comments

#101 - support zlib compression

Pull Request - State: closed - Opened by magland 2 months ago - 2 comments

#101 - support zlib compression

Pull Request - State: closed - Opened by magland 2 months ago - 2 comments

#100 - help codespell ignore words

Issue - State: closed - Opened by magland 5 months ago - 1 comment

#100 - help codespell ignore words

Issue - State: closed - Opened by magland 5 months ago - 1 comment

#99 - Expand tests to increase coverage

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#99 - Expand tests to increase coverage

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#98 - Consolidate and tidy examples

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#98 - Consolidate and tidy examples

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#97 - remove staging area functionality

Pull Request - State: closed - Opened by magland 5 months ago - 5 comments

#97 - remove staging area functionality

Pull Request - State: closed - Opened by magland 5 months ago - 5 comments

#96 - Updates to README.md

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#96 - Updates to README.md

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#95 - Do not allow writing of complex datasets

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#95 - Do not allow writing of complex datasets

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#94 - Additional url resolver needed by dendro

Pull Request - State: closed - Opened by magland 5 months ago - 2 comments

#94 - Additional url resolver needed by dendro

Pull Request - State: closed - Opened by magland 5 months ago - 2 comments

#93 - Make pypi pre-release 0.4.0.a1

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#93 - Make pypi pre-release 0.4.0.a1

Pull Request - State: closed - Opened by magland 5 months ago - 1 comment

#92 - Support .lindi.d directory representation (in addition to .lindi.tar)

Pull Request - State: closed - Opened by magland 5 months ago - 2 comments

#92 - Support .lindi.d directory representation (in addition to .lindi.tar)

Pull Request - State: closed - Opened by magland 5 months ago - 2 comments

#91 - VirtualiZarr

Issue - State: open - Opened by oruebel 6 months ago - 2 comments

#91 - VirtualiZarr

Issue - State: open - Opened by oruebel 6 months ago - 2 comments

#90 - Add example appending to NWB using LINDI and PyNWB

Pull Request - State: closed - Opened by rly 6 months ago - 2 comments

#90 - Add example appending to NWB using LINDI and PyNWB

Pull Request - State: closed - Opened by rly 6 months ago - 2 comments

#89 - single binary lindi using tar

Pull Request - State: closed - Opened by magland 6 months ago - 5 comments

#89 - single binary lindi using tar

Pull Request - State: closed - Opened by magland 6 months ago - 5 comments

#88 - single file binary lindi

Pull Request - State: closed - Opened by magland 6 months ago - 8 comments

#88 - single file binary lindi

Pull Request - State: closed - Opened by magland 6 months ago - 8 comments

#87 - Add method to retrieve keys in LindiH5pyFile class

Pull Request - State: closed - Opened by magland 7 months ago - 3 comments

#87 - Add method to retrieve keys in LindiH5pyFile class

Pull Request - State: closed - Opened by magland 7 months ago - 3 comments

#86 - repr error

Issue - State: open - Opened by bendichter 7 months ago - 1 comment

#86 - repr error

Issue - State: open - Opened by bendichter 7 months ago - 1 comment

#85 - NWB search demo

Issue - State: open - Opened by bendichter 7 months ago - 3 comments

#85 - NWB search demo

Issue - State: open - Opened by bendichter 7 months ago - 3 comments

#84 - Split large unchunked contiguous HDF5 datasets into smaller chunks

Pull Request - State: closed - Opened by magland 7 months ago - 7 comments

#84 - Split large unchunked contiguous HDF5 datasets into smaller chunks

Pull Request - State: closed - Opened by magland 7 months ago - 7 comments

#83 - WIP: handle contiguous h5 dataset by splitting into chunks

Pull Request - State: closed - Opened by magland 7 months ago

#82 - WIP: add single_chunk_size_threshold opt

Pull Request - State: closed - Opened by magland 7 months ago - 2 comments

#82 - WIP: add single_chunk_size_threshold opt

Pull Request - State: closed - Opened by magland 7 months ago - 2 comments

#81 - Temporary failure in name resolution

Issue - State: closed - Opened by vncntprvst 8 months ago - 7 comments

#80 - Use zarr FSStore and fsspec ReferenceFileSystem

Pull Request - State: open - Opened by rly 8 months ago - 1 comment

#80 - Use zarr FSStore and fsspec ReferenceFileSystem

Pull Request - State: open - Opened by rly 8 months ago - 1 comment

#79 - Update README.md and examples

Pull Request - State: closed - Opened by magland 8 months ago - 2 comments

#79 - Update README.md and examples

Pull Request - State: closed - Opened by magland 8 months ago - 2 comments

#78 - Add multi-threading like in remfile

Issue - State: open - Opened by rly 8 months ago - 5 comments

#78 - Add multi-threading like in remfile

Issue - State: open - Opened by rly 8 months ago - 5 comments

#77 - Fix handling of datasets with shape (0,0,...)

Pull Request - State: closed - Opened by rly 9 months ago - 3 comments

#77 - Fix handling of datasets with shape (0,0,...)

Pull Request - State: closed - Opened by rly 9 months ago - 3 comments

#76 - Data with shape (0,0,0) triggering assertion error after get chunk refactor

Issue - State: closed - Opened by rly 9 months ago
Labels: category: bug

#76 - Data with shape (0,0,0) triggering assertion error after get chunk refactor

Issue - State: closed - Opened by rly 9 months ago
Labels: category: bug

#75 - Implement `LindiReferenceFileSystemStore.__contains__`

Pull Request - State: closed - Opened by rly 9 months ago - 3 comments

#75 - Implement `LindiReferenceFileSystemStore.__contains__`

Pull Request - State: closed - Opened by rly 9 months ago - 3 comments

#74 - Reading single chunk takes 10x longer than remfile

Issue - State: open - Opened by rly 9 months ago - 5 comments
Labels: category: bug

#74 - Reading single chunk takes 10x longer than remfile

Issue - State: open - Opened by rly 9 months ago - 5 comments
Labels: category: bug

#73 - [Idea] Experiment with indexing transcriptomics data on NeMO

Issue - State: open - Opened by rly 9 months ago
Labels: category: proposal

#73 - [Idea] Experiment with indexing transcriptomics data on NeMO

Issue - State: open - Opened by rly 9 months ago
Labels: category: proposal

#71 - Support links to datasets/arrays

Pull Request - State: closed - Opened by rly 9 months ago - 4 comments

#71 - Support links to datasets/arrays

Pull Request - State: closed - Opened by rly 9 months ago - 4 comments

#69 - LocalCache: limit allowed blob size

Pull Request - State: closed - Opened by magland 9 months ago - 6 comments

#69 - LocalCache: limit allowed blob size

Pull Request - State: closed - Opened by magland 9 months ago - 6 comments

#68 - Use chunk_iter when adding chunk refs

Pull Request - State: closed - Opened by rly 9 months ago - 13 comments

#68 - Use chunk_iter when adding chunk refs

Pull Request - State: closed - Opened by rly 9 months ago - 13 comments

#67 - Use chunk_iter to avoid slow performance for files with many chunks

Issue - State: closed - Opened by rly 9 months ago - 2 comments

#67 - Use chunk_iter to avoid slow performance for files with many chunks

Issue - State: closed - Opened by rly 9 months ago - 2 comments

#66 - Allow LindiH5pyFile.from_hdf5_file to accept remote URL for local file

Pull Request - State: closed - Opened by rly 9 months ago - 1 comment

#66 - Allow LindiH5pyFile.from_hdf5_file to accept remote URL for local file

Pull Request - State: closed - Opened by rly 9 months ago - 1 comment

#65 - expand use of templates

Issue - State: closed - Opened by bendichter 9 months ago - 4 comments

#65 - expand use of templates

Issue - State: closed - Opened by bendichter 9 months ago - 4 comments

#64 - Update example urls to use new .nwb.lindi.json file extension

Pull Request - State: closed - Opened by magland 9 months ago - 1 comment

#64 - Update example urls to use new .nwb.lindi.json file extension

Pull Request - State: closed - Opened by magland 9 months ago - 1 comment

#63 - Add generation metadata to .lindi.json file writing (6)

Pull Request - State: closed - Opened by magland 9 months ago - 4 comments

#63 - Add generation metadata to .lindi.json file writing (6)

Pull Request - State: closed - Opened by magland 9 months ago - 4 comments

#62 - catch chunk byte range error (5)

Pull Request - State: closed - Opened by magland 9 months ago - 2 comments

#62 - catch chunk byte range error (5)

Pull Request - State: closed - Opened by magland 9 months ago - 2 comments

#61 - Error running LINDI in a subproccess

Issue - State: open - Opened by oruebel 9 months ago - 9 comments

#61 - Error running LINDI in a subproccess

Issue - State: open - Opened by oruebel 9 months ago - 9 comments

#59 - h5py monkey patch

Pull Request - State: closed - Opened by magland 10 months ago - 2 comments

#59 - h5py monkey patch

Pull Request - State: closed - Opened by magland 10 months ago - 2 comments

#57 - write to local lindi json file (3)

Pull Request - State: closed - Opened by magland 10 months ago - 3 comments

#57 - write to local lindi json file (3)

Pull Request - State: closed - Opened by magland 10 months ago - 3 comments

#56 - Copy chunks to staging area (2)

Pull Request - State: closed - Opened by magland 10 months ago - 3 comments

#56 - Copy chunks to staging area (2)

Pull Request - State: closed - Opened by magland 10 months ago - 3 comments

#55 - Support additional `create_dataset` kwargs

Issue - State: open - Opened by rly 10 months ago

#55 - Support additional `create_dataset` kwargs

Issue - State: open - Opened by rly 10 months ago

#54 - implement LocalCache (1)

Pull Request - State: closed - Opened by magland 10 months ago - 7 comments

#54 - implement LocalCache (1)

Pull Request - State: closed - Opened by magland 10 months ago - 7 comments

#52 - remove case of LindiH5pyFile wrapping h5py.File

Pull Request - State: closed - Opened by magland 10 months ago - 1 comment

#52 - remove case of LindiH5pyFile wrapping h5py.File

Pull Request - State: closed - Opened by magland 10 months ago - 1 comment

#51 - implement templates for reference file system

Pull Request - State: closed - Opened by magland 10 months ago - 1 comment

#51 - implement templates for reference file system

Pull Request - State: closed - Opened by magland 10 months ago - 1 comment