neurodata/brainlit issues and pull requests

#451 - Bump jinja2 from 2.11.3 to 3.1.3 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, no-pr-activity

#450 - manual ome

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#449 - simple costs

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#448 - accelerate gg creation

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#447 - Tathey1 biccnfig

Pull Request - State: open - Opened by tathey1 about 1 year ago - 2 comments

#446 - remove dups

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#445 - Tathey1 ailey

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#444 - Update prep-viterbrain.py

Pull Request - State: open - Opened by tathey1 about 1 year ago - 1 comment

#443 - astroid

Pull Request - State: closed - Opened by tathey1 about 1 year ago

#442 - Update README.md

Pull Request - State: closed - Opened by tathey1 about 1 year ago - 1 comment

#441 - Tathey1 map revise

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#440 - Tathey1 sriram

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#439 - Update README.md

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#438 - Tathey1 map rebuttal

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#437 - make single neuron trace object

Issue - State: open - Opened by tathey1 over 1 year ago - 1 comment
Labels: no-issue-activity

#436 - consider the changes #325

Pull Request - State: closed - Opened by Swarnlataaa over 1 year ago - 3 comments
Labels: no-pr-activity

#435 - #325

Pull Request - State: closed - Opened by Swarnlataaa over 1 year ago - 1 comment

#434 - Update README.md

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#433 - update readme

Pull Request - State: open - Opened by tathey1 over 1 year ago - 2 comments
Labels: no-pr-activity

#432 - no dubs

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#431 - find last period, not first

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#430 - images

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#429 - Tathey1 brainline demo

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#428 - Update apply_ilastik.py

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#427 - Update install_faq.rst

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#426 - ilastik path

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#425 - change json

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#424 - change data json

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#423 - Tathey1 brainline demo

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#422 - update

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#421 - Tathey1 brainline demo

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#420 - Tathey1 biccnfig

Pull Request - State: closed - Opened by tathey1 over 1 year ago

#419 - some updates

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#418 - updates

Pull Request - State: closed - Opened by tathey1 over 1 year ago - 1 comment

#417 - Tathey1 brainline demo

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#416 - Tathey1 ailey

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#415 - remove octree data

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#414 - lessons from windows

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#413 - Update README.md

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#412 - change code to run via docker

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#411 - Create docker-image.yml

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#410 - Tathey1 ailey

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#409 - Tathey1 docker

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#408 - Tathey1 remove stuff

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#407 - Updates for sriram

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#406 - Tathey1 trace sample

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#405 - remove black from python, add codecov

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#404 - ilastik instructions

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#403 - assisted tracing example

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#402 - Tathey1 trace sample

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#401 - tutorial ready

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#400 - make fixtures and temporary files for viterbrain and stategen tests

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: no-issue-activity

#399 - codecov not working on circleci

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: no-issue-activity

#398 - remove testing without aws credentials

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#397 - Update python.yml

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#396 - Update README.md

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#395 - 10k detections per ng link

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#394 - Tathey1 10kplus

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#393 - updates

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#392 - combine applying ilastik

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: no-issue-activity

#391 - apply ilastik to preloaded arrays

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: no-issue-activity

#390 - Make argument names uniform

Issue - State: open - Opened by tathey1 almost 2 years ago - 3 comments
Labels: documentation, good first issue, no-issue-activity

#389 - par zarr write

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#388 - Tathey1 sriram

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#387 - Tathey1 map paper

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#386 - replace NeuronTrace with nGauge?

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: enhancement, no-issue-activity

#385 - data examples for lddmm cfigure

Pull Request - State: closed - Opened by tathey1 almost 2 years ago

#384 - add instructions on labeling validation data to brainline

Issue - State: open - Opened by tathey1 almost 2 years ago - 1 comment
Labels: no-issue-activity

#383 - update mapping code

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#382 - BrainLine documentation and testing

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#381 - Tathey1 ailey

Pull Request - State: closed - Opened by tathey1 almost 2 years ago - 1 comment

#380 - Bump ipython from 7.31.1 to 8.10.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#379 - updates

Pull Request - State: closed - Opened by tathey1 about 2 years ago

#378 - Create stale.yml

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#377 - black github wkflow

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#376 - Tathey1 sriram

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#375 - Tathey1 ailey

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 3 comments

#374 - viz docs

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#373 - spatial distance curve metric redundancy

Issue - State: open - Opened by tathey1 about 2 years ago - 5 comments
Labels: good first issue, no-issue-activity

#372 - Tathey1 sriram

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#371 - only run segmentation on chunks that have brain tissue

Issue - State: open - Opened by tathey1 about 2 years ago - 2 comments
Labels: no-issue-activity

#370 - Update config.yml

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#369 - viz nb

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#368 - tathey1 sriram

Pull Request - State: closed - Opened by tathey1 about 2 years ago - 1 comment

#367 - Tathey1 register axons

Pull Request - State: closed - Opened by tathey1 over 2 years ago - 1 comment

#366 - move cloudreg/reg

Pull Request - State: closed - Opened by tathey1 over 2 years ago

#365 - Update runtime.txt

Pull Request - State: closed - Opened by tathey1 over 2 years ago - 1 comment

#364 - Code for axon mapping paper

Pull Request - State: closed - Opened by tathey1 over 2 years ago - 2 comments

#363 - napari_gui buttons and files for processing images + running plugin

Pull Request - State: closed - Opened by sejalsrivastava1 over 2 years ago - 2 comments

#362 - remove from session

Pull Request - State: closed - Opened by tathey1 over 2 years ago

#361 - add installation issues header to left navigation bar

Pull Request - State: closed - Opened by tathey1 over 2 years ago - 1 comment

#360 - Add Viterbrain example label data

Pull Request - State: closed - Opened by tathey1 over 2 years ago

#358 - Make NeuronTrace coordinate units more clear

Issue - State: open - Opened by tathey1 over 2 years ago - 1 comment
Labels: good first issue, no-issue-activity

#356 - Modify Principal Curves

Pull Request - State: closed - Opened by CaseyWeiner over 2 years ago - 3 comments

#355 - Tathey1 nebec

Pull Request - State: closed - Opened by tathey1 almost 3 years ago - 2 comments
Labels: no-pr-activity

#354 - Pytorch CNN Segmentation

Pull Request - State: open - Opened by shreyasingh1 almost 3 years ago - 5 comments
Labels: no-pr-activity

#353 - get pytest-qt to work on circleci

Issue - State: open - Opened by tathey1 almost 3 years ago - 2 comments
Labels: no-issue-activity

#352 - fix warnings in pytests

Issue - State: open - Opened by tathey1 almost 3 years ago - 5 comments
Labels: good first issue, dependencies, no-issue-activity

#343 - Checks don't have access to AWS permissions in PR's from forks

Issue - State: open - Opened by tathey1 about 3 years ago - 3 comments
Labels: no-issue-activity

#339 - remove old viterbi

Pull Request - State: closed - Opened by tathey1 about 3 years ago - 1 comment

GitHub / neurodata/brainlit issues and pull requests