Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / netsiphd/netrd issues and pull requests

#329 - Update CI coverage and tests

Pull Request - State: closed - Opened by sdmccabe over 1 year ago - 10 comments

#328 - Two small fixes and black file auto-formatting.

Pull Request - State: closed - Opened by djpasseyjr over 1 year ago - 2 comments

#327 - Add JOSS cite

Pull Request - State: closed - Opened by sdmccabe over 3 years ago

#326 - Bump version to 0.3

Pull Request - State: closed - Opened by sdmccabe over 3 years ago

#324 - Fix bug on distance/netsimile.py

Pull Request - State: closed - Opened by Keygoksmg over 3 years ago - 1 comment

#323 - Correct bug in README example

Pull Request - State: closed - Opened by sdmccabe over 3 years ago

#322 - README tweaks

Pull Request - State: closed - Opened by sdmccabe over 3 years ago

#321 - Use full examples in README

Pull Request - State: closed - Opened by sdmccabe over 3 years ago - 1 comment

#320 - Add flake8 to CI

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago - 2 comments

#319 - Clean up unused imports and maintainability issues

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago - 1 comment

#318 - LGTM results/integration

Issue - State: closed - Opened by sdmccabe almost 4 years ago - 6 comments

#317 - Add Python 3.9 support to CI

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#316 - Address black version update

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#315 - Complete migration to Github Actions for CI

Pull Request - State: closed - Opened by netsiphd almost 4 years ago - 1 comment

#314 - Correct directory structure in .github

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#313 - Replace Travis with Github CI

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#312 - Drop Travis for GH Actions

Issue - State: closed - Opened by sdmccabe almost 4 years ago - 4 comments

#311 - add pretty pics to the readme

Pull Request - State: closed - Opened by jkbren almost 4 years ago

#310 - final paper edits

Pull Request - State: closed - Opened by jkbren almost 4 years ago

#309 - add folder for JOSS submission

Pull Request - State: closed - Opened by jkbren almost 4 years ago

#308 - update README to include recent publications

Pull Request - State: closed - Opened by jkbren almost 4 years ago

#307 - add new concise tutorial notebook

Pull Request - State: closed - Opened by jkbren almost 4 years ago - 1 comment

#306 - Add proper exception for graphs in (D)NBD

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#305 - Refactor Travis to use miniconda

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago

#304 - Apply PortraitDivergence to weighted networks

Pull Request - State: closed - Opened by sdmccabe almost 4 years ago - 2 comments

#303 - Publications in README?

Issue - State: closed - Opened by sdmccabe almost 4 years ago - 1 comment
Labels: question

#302 - DistributionalNBD: use more descriptive exception

Issue - State: closed - Opened by sdmccabe about 4 years ago - 4 comments
Labels: enhancement

#301 - long test times on macOS

Issue - State: closed - Opened by sdmccabe about 4 years ago
Labels: bug

#300 - Bump version to 0.2.2

Pull Request - State: closed - Opened by sdmccabe about 4 years ago - 2 comments

#299 - Drop eigenvalues with negative complex part in NBD

Pull Request - State: closed - Opened by sdmccabe about 4 years ago - 15 comments

#298 - Set values close to zero to zero in JSD

Pull Request - State: closed - Opened by sdmccabe about 4 years ago

#297 - Nondeterminism in test_directed_input

Issue - State: open - Opened by sdmccabe about 4 years ago
Labels: bug

#296 - Add test coverage for invariance under vertex relabeling

Pull Request - State: closed - Opened by sdmccabe about 4 years ago - 20 comments

#295 - Add PyPI badge

Pull Request - State: closed - Opened by sdmccabe about 4 years ago

#294 - Handle short path lengths in polynomial dissimilarity

Issue - State: closed - Opened by sdmccabe about 4 years ago - 4 comments

#293 - Implement graph diffusion distance

Pull Request - State: closed - Opened by sdmccabe about 4 years ago - 12 comments

#292 - Improve performance and fix bugs for reconstructors

Pull Request - State: closed - Opened by chiahungyang over 4 years ago - 3 comments

#291 - Clarify license of Portrait Divergence

Pull Request - State: closed - Opened by sdmccabe over 4 years ago

#290 - Bring threshold inside BaseReconstructor class

Pull Request - State: open - Opened by sdmccabe over 4 years ago - 14 comments

#289 - Introduce and use decorators for graph sanitizers

Pull Request - State: closed - Opened by sdmccabe over 4 years ago - 1 comment

#288 - Portrait divergence: unclear if weighted graphs are supported

Issue - State: closed - Opened by sdmccabe over 4 years ago - 3 comments
Labels: bug

#287 - Use unweighted graphs where appropriate in dynamics

Pull Request - State: closed - Opened by sdmccabe over 4 years ago

#286 - VoterModel fails on graphs with negatively weighted edges

Issue - State: closed - Opened by sdmccabe over 4 years ago - 1 comment
Labels: bug

#285 - refactor GraphicalLasso to use sklearn's implementation

Pull Request - State: closed - Opened by sdmccabe over 4 years ago - 1 comment

#284 - correct threshold_type default argument in ConvergentCrossMapping

Pull Request - State: closed - Opened by tlarock over 4 years ago

#283 - Fix bugs of ConvergentCrossMapping

Pull Request - State: closed - Opened by chiahungyang over 4 years ago

#282 - Rename TimeGrangerCausality to GrangerCausality

Pull Request - State: closed - Opened by sdmccabe over 4 years ago

#281 - Refactor Kuramoto model

Pull Request - State: closed - Opened by sdmccabe over 4 years ago

#280 - Replace earthmover's distance implementation

Pull Request - State: closed - Opened by sdmccabe over 4 years ago - 5 comments

#279 - Test for handling disconnected graphs

Issue - State: open - Opened by sdmccabe over 4 years ago
Labels: enhancement

#278 - new granger causality that works

Pull Request - State: closed - Opened by jkbren over 4 years ago - 1 comment

#276 - Explicitly test for and handle weighted input

Pull Request - State: closed - Opened by sdmccabe over 4 years ago - 5 comments

#275 - Make SIS stop when the epidemic dies off

Pull Request - State: closed - Opened by leotrs almost 5 years ago - 1 comment

#273 - Make SIS work on graphs whose nodes are not labeled by consecutive integers

Pull Request - State: closed - Opened by leotrs almost 5 years ago

#272 - drop unnecessary sklearn dependency

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago - 1 comment

#271 - Separating construction of weights matrix and thresholding in reconstructors

Issue - State: open - Opened by sdmccabe almost 5 years ago - 6 comments
Labels: enhancement

#270 - Test for weighted input in distances

Issue - State: closed - Opened by sdmccabe almost 5 years ago - 1 comment
Labels: enhancement, help wanted

#269 - bump version to v0.2.1

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#268 - Add Python 3.8 to Travis matrix

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago - 2 comments

#267 - Add Python 3.8 to Travis

Issue - State: closed - Opened by sdmccabe almost 5 years ago - 1 comment
Labels: enhancement

#266 - Update to new black autoformatting standards

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#265 - Refactor PolynomialDissimilarity and correct error in calculation

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#264 - Rename entropy to entropy_from_seq

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago - 5 comments

#263 - Correct documentation of dk-series

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#262 - use defaultdict in joint_entropy calculation

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#261 - Clarify usage of utilities.entropy.entropy?

Issue - State: closed - Opened by sdmccabe almost 5 years ago - 2 comments
Labels: question

#260 - add dk-series 3 and 4

Issue - State: closed - Opened by sdmccabe almost 5 years ago

#259 - dk-series distance missing from overview in docs

Issue - State: closed - Opened by sdmccabe almost 5 years ago

#258 - Version bump

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#257 - Dmeasure

Pull Request - State: closed - Opened by sdmccabe almost 5 years ago

#256 - Adapt the naive transfer entropy reconstructor to our entropy utility functions

Pull Request - State: closed - Opened by chiahungyang almost 5 years ago - 1 comment

#255 - documentation + tests for distance measures that accept graphs of different sizes

Issue - State: open - Opened by sdmccabe almost 5 years ago
Labels: enhancement, help wanted

#254 - Validating reconstructors against reference implementations

Issue - State: open - Opened by sdmccabe almost 5 years ago - 3 comments

#253 - Implement D-measure

Issue - State: closed - Opened by sdmccabe about 5 years ago - 1 comment
Labels: enhancement

#252 - update netrd Cython and Numpy requirements

Pull Request - State: closed - Opened by sdmccabe about 5 years ago

#251 - ValueError ufunc incompatibility in tests

Issue - State: closed - Opened by sdmccabe about 5 years ago - 6 comments

#250 - Use proper normalization in Hamming

Pull Request - State: closed - Opened by sdmccabe about 5 years ago

#249 - Resolve DeprecationWarning in DegreeDivergence

Pull Request - State: closed - Opened by sdmccabe about 5 years ago

#248 - Implement graphlet correlation distance

Issue - State: open - Opened by leotrs about 5 years ago
Labels: enhancement

#247 - sort vectors and use netrd JSD in CommunicabilityJSD

Pull Request - State: closed - Opened by jkbren about 5 years ago

#246 - sorted communicability vector and have now confirmed this is correct

Pull Request - State: closed - Opened by jkbren about 5 years ago

#245 - Validating distances against reference implementations

Issue - State: open - Opened by sdmccabe about 5 years ago - 10 comments

#244 - add test for triangle inequality

Pull Request - State: closed - Opened by sdmccabe about 5 years ago - 2 comments

#243 - dk-series distance

Pull Request - State: closed - Opened by sdmccabe about 5 years ago - 11 comments

#242 - Use N or N-1 instead of empirical kmax in degree histogram

Pull Request - State: closed - Opened by sdmccabe about 5 years ago - 3 comments

#241 - Remove jaccard_similarity_score from JaccardDistance

Pull Request - State: closed - Opened by sdmccabe over 5 years ago - 2 comments

#232 - Earth mover's distance and POT dependency

Issue - State: closed - Opened by sdmccabe over 5 years ago - 3 comments
Labels: enhancement

#227 - Graph edit distances

Issue - State: closed - Opened by sdmccabe over 5 years ago - 8 comments
Labels: enhancement

#218 - Redirect netrd.github-io.com/netrd to netrdexplorer.herokuapp.com

Issue - State: closed - Opened by leotrs over 5 years ago - 1 comment

#202 - Test coverage of special parameterizations

Issue - State: open - Opened by sdmccabe over 5 years ago - 3 comments
Labels: enhancement, good first issue

#201 - Constant input warning in partial correlation reconstructor

Issue - State: open - Opened by sdmccabe over 5 years ago - 2 comments
Labels: question

#180 - DeprecationWarning in Jaccard distance

Issue - State: closed - Opened by sdmccabe over 5 years ago - 3 comments
Labels: question

#174 - Separating feature construction from calculation of distances

Issue - State: open - Opened by sdmccabe over 5 years ago - 25 comments
Labels: enhancement

#172 - Time Granger Causality - confirm implementation

Issue - State: closed - Opened by sdmccabe over 5 years ago - 3 comments
Labels: help wanted

#22 - Update README.md to include a step for adding writeup information

Pull Request - State: closed - Opened by jkbren over 5 years ago

#21 - update README.md to include link to overleaf doc for method descriptions

Pull Request - State: closed - Opened by jkbren over 5 years ago - 1 comment

#16 - Update README.md

Pull Request - State: closed - Opened by jkbren over 5 years ago