Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / netsiphd/netrd issues and pull requests
#329 - Update CI coverage and tests
Pull Request -
State: closed - Opened by sdmccabe over 1 year ago
- 10 comments
#328 - Two small fixes and black file auto-formatting.
Pull Request -
State: closed - Opened by djpasseyjr over 1 year ago
- 2 comments
#327 - Add JOSS cite
Pull Request -
State: closed - Opened by sdmccabe over 3 years ago
#326 - Bump version to 0.3
Pull Request -
State: closed - Opened by sdmccabe over 3 years ago
#325 - paper edits (and added a reference to the README, as well as the JOSS pdf generator workflow)
Pull Request -
State: closed - Opened by jkbren over 3 years ago
#324 - Fix bug on distance/netsimile.py
Pull Request -
State: closed - Opened by Keygoksmg over 3 years ago
- 1 comment
#323 - Correct bug in README example
Pull Request -
State: closed - Opened by sdmccabe over 3 years ago
#322 - README tweaks
Pull Request -
State: closed - Opened by sdmccabe over 3 years ago
#321 - Use full examples in README
Pull Request -
State: closed - Opened by sdmccabe over 3 years ago
- 1 comment
#320 - Add flake8 to CI
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
- 2 comments
#319 - Clean up unused imports and maintainability issues
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
- 1 comment
#318 - LGTM results/integration
Issue -
State: closed - Opened by sdmccabe almost 4 years ago
- 6 comments
#317 - Add Python 3.9 support to CI
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#316 - Address black version update
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#315 - Complete migration to Github Actions for CI
Pull Request -
State: closed - Opened by netsiphd almost 4 years ago
- 1 comment
#314 - Correct directory structure in .github
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#313 - Replace Travis with Github CI
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#312 - Drop Travis for GH Actions
Issue -
State: closed - Opened by sdmccabe almost 4 years ago
- 4 comments
#311 - add pretty pics to the readme
Pull Request -
State: closed - Opened by jkbren almost 4 years ago
#310 - final paper edits
Pull Request -
State: closed - Opened by jkbren almost 4 years ago
#309 - add folder for JOSS submission
Pull Request -
State: closed - Opened by jkbren almost 4 years ago
#308 - update README to include recent publications
Pull Request -
State: closed - Opened by jkbren almost 4 years ago
#307 - add new concise tutorial notebook
Pull Request -
State: closed - Opened by jkbren almost 4 years ago
- 1 comment
#306 - Add proper exception for graphs in (D)NBD
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#305 - Refactor Travis to use miniconda
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
#304 - Apply PortraitDivergence to weighted networks
Pull Request -
State: closed - Opened by sdmccabe almost 4 years ago
- 2 comments
#303 - Publications in README?
Issue -
State: closed - Opened by sdmccabe almost 4 years ago
- 1 comment
Labels: question
#302 - DistributionalNBD: use more descriptive exception
Issue -
State: closed - Opened by sdmccabe about 4 years ago
- 4 comments
Labels: enhancement
#301 - long test times on macOS
Issue -
State: closed - Opened by sdmccabe about 4 years ago
Labels: bug
#300 - Bump version to 0.2.2
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
- 2 comments
#299 - Drop eigenvalues with negative complex part in NBD
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
- 15 comments
#298 - Set values close to zero to zero in JSD
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
#297 - Nondeterminism in test_directed_input
Issue -
State: open - Opened by sdmccabe about 4 years ago
Labels: bug
#296 - Add test coverage for invariance under vertex relabeling
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
- 20 comments
#295 - Add PyPI badge
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
#294 - Handle short path lengths in polynomial dissimilarity
Issue -
State: closed - Opened by sdmccabe about 4 years ago
- 4 comments
#293 - Implement graph diffusion distance
Pull Request -
State: closed - Opened by sdmccabe about 4 years ago
- 12 comments
#292 - Improve performance and fix bugs for reconstructors
Pull Request -
State: closed - Opened by chiahungyang over 4 years ago
- 3 comments
#291 - Clarify license of Portrait Divergence
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
#290 - Bring threshold inside BaseReconstructor class
Pull Request -
State: open - Opened by sdmccabe over 4 years ago
- 14 comments
#289 - Introduce and use decorators for graph sanitizers
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
- 1 comment
#288 - Portrait divergence: unclear if weighted graphs are supported
Issue -
State: closed - Opened by sdmccabe over 4 years ago
- 3 comments
Labels: bug
#287 - Use unweighted graphs where appropriate in dynamics
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
#286 - VoterModel fails on graphs with negatively weighted edges
Issue -
State: closed - Opened by sdmccabe over 4 years ago
- 1 comment
Labels: bug
#285 - refactor GraphicalLasso to use sklearn's implementation
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
- 1 comment
#284 - correct threshold_type default argument in ConvergentCrossMapping
Pull Request -
State: closed - Opened by tlarock over 4 years ago
#283 - Fix bugs of ConvergentCrossMapping
Pull Request -
State: closed - Opened by chiahungyang over 4 years ago
#282 - Rename TimeGrangerCausality to GrangerCausality
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
#281 - Refactor Kuramoto model
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
#280 - Replace earthmover's distance implementation
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
- 5 comments
#279 - Test for handling disconnected graphs
Issue -
State: open - Opened by sdmccabe over 4 years ago
Labels: enhancement
#278 - new granger causality that works
Pull Request -
State: closed - Opened by jkbren over 4 years ago
- 1 comment
#277 - convergent cross mapping doesn't work if there isn't enough noise in the time series
Issue -
State: closed - Opened by jkbren over 4 years ago
Labels: bug
#276 - Explicitly test for and handle weighted input
Pull Request -
State: closed - Opened by sdmccabe over 4 years ago
- 5 comments
#275 - Make SIS stop when the epidemic dies off
Pull Request -
State: closed - Opened by leotrs almost 5 years ago
- 1 comment
#274 - Make all dynamics work on nodes that are not labeled by consecutive integers
Issue -
State: open - Opened by leotrs almost 5 years ago
#273 - Make SIS work on graphs whose nodes are not labeled by consecutive integers
Pull Request -
State: closed - Opened by leotrs almost 5 years ago
#272 - drop unnecessary sklearn dependency
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
- 1 comment
#271 - Separating construction of weights matrix and thresholding in reconstructors
Issue -
State: open - Opened by sdmccabe almost 5 years ago
- 6 comments
Labels: enhancement
#270 - Test for weighted input in distances
Issue -
State: closed - Opened by sdmccabe almost 5 years ago
- 1 comment
Labels: enhancement, help wanted
#269 - bump version to v0.2.1
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#268 - Add Python 3.8 to Travis matrix
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
- 2 comments
#267 - Add Python 3.8 to Travis
Issue -
State: closed - Opened by sdmccabe almost 5 years ago
- 1 comment
Labels: enhancement
#266 - Update to new black autoformatting standards
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#265 - Refactor PolynomialDissimilarity and correct error in calculation
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#264 - Rename entropy to entropy_from_seq
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
- 5 comments
#263 - Correct documentation of dk-series
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#262 - use defaultdict in joint_entropy calculation
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#261 - Clarify usage of utilities.entropy.entropy?
Issue -
State: closed - Opened by sdmccabe almost 5 years ago
- 2 comments
Labels: question
#260 - add dk-series 3 and 4
Issue -
State: closed - Opened by sdmccabe almost 5 years ago
#259 - dk-series distance missing from overview in docs
Issue -
State: closed - Opened by sdmccabe almost 5 years ago
#258 - Version bump
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#257 - Dmeasure
Pull Request -
State: closed - Opened by sdmccabe almost 5 years ago
#256 - Adapt the naive transfer entropy reconstructor to our entropy utility functions
Pull Request -
State: closed - Opened by chiahungyang almost 5 years ago
- 1 comment
#255 - documentation + tests for distance measures that accept graphs of different sizes
Issue -
State: open - Opened by sdmccabe almost 5 years ago
Labels: enhancement, help wanted
#254 - Validating reconstructors against reference implementations
Issue -
State: open - Opened by sdmccabe almost 5 years ago
- 3 comments
#253 - Implement D-measure
Issue -
State: closed - Opened by sdmccabe about 5 years ago
- 1 comment
Labels: enhancement
#252 - update netrd Cython and Numpy requirements
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
#251 - ValueError ufunc incompatibility in tests
Issue -
State: closed - Opened by sdmccabe about 5 years ago
- 6 comments
#250 - Use proper normalization in Hamming
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
#249 - Resolve DeprecationWarning in DegreeDivergence
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
#248 - Implement graphlet correlation distance
Issue -
State: open - Opened by leotrs about 5 years ago
Labels: enhancement
#247 - sort vectors and use netrd JSD in CommunicabilityJSD
Pull Request -
State: closed - Opened by jkbren about 5 years ago
#246 - sorted communicability vector and have now confirmed this is correct
Pull Request -
State: closed - Opened by jkbren about 5 years ago
#245 - Validating distances against reference implementations
Issue -
State: open - Opened by sdmccabe about 5 years ago
- 10 comments
#244 - add test for triangle inequality
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
- 2 comments
#243 - dk-series distance
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
- 11 comments
#242 - Use N or N-1 instead of empirical kmax in degree histogram
Pull Request -
State: closed - Opened by sdmccabe about 5 years ago
- 3 comments
#241 - Remove jaccard_similarity_score from JaccardDistance
Pull Request -
State: closed - Opened by sdmccabe over 5 years ago
- 2 comments
#232 - Earth mover's distance and POT dependency
Issue -
State: closed - Opened by sdmccabe over 5 years ago
- 3 comments
Labels: enhancement
#227 - Graph edit distances
Issue -
State: closed - Opened by sdmccabe over 5 years ago
- 8 comments
Labels: enhancement
#218 - Redirect netrd.github-io.com/netrd to netrdexplorer.herokuapp.com
Issue -
State: closed - Opened by leotrs over 5 years ago
- 1 comment
#202 - Test coverage of special parameterizations
Issue -
State: open - Opened by sdmccabe over 5 years ago
- 3 comments
Labels: enhancement, good first issue
#201 - Constant input warning in partial correlation reconstructor
Issue -
State: open - Opened by sdmccabe over 5 years ago
- 2 comments
Labels: question
#180 - DeprecationWarning in Jaccard distance
Issue -
State: closed - Opened by sdmccabe over 5 years ago
- 3 comments
Labels: question
#174 - Separating feature construction from calculation of distances
Issue -
State: open - Opened by sdmccabe over 5 years ago
- 25 comments
Labels: enhancement
#172 - Time Granger Causality - confirm implementation
Issue -
State: closed - Opened by sdmccabe over 5 years ago
- 3 comments
Labels: help wanted
#22 - Update README.md to include a step for adding writeup information
Pull Request -
State: closed - Opened by jkbren over 5 years ago
#21 - update README.md to include link to overleaf doc for method descriptions
Pull Request -
State: closed - Opened by jkbren over 5 years ago
- 1 comment
#16 - Update README.md
Pull Request -
State: closed - Opened by jkbren over 5 years ago