Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / netneurolab/netneurotools issues and pull requests

#140 - Breaking changes: major reorganization of netneurotools

Pull Request - State: open - Opened by liuzhenqi77 5 months ago - 1 comment

#138 - Some ideas for improving the library

Issue - State: open - Opened by kuffmode 6 months ago

#136 - [FIX] fixing the asymmetric case in search_information

Pull Request - State: closed - Opened by fmilisav 7 months ago

#135 - [ENH] added user-specified bin arguments for struct_consensus

Pull Request - State: closed - Opened by fmilisav 7 months ago

#134 - [ENH] Strength nulls

Pull Request - State: closed - Opened by fmilisav 7 months ago

#133 - [ENH] added parallelization to dominance analysis function

Pull Request - State: closed - Opened by eric2302 7 months ago - 2 comments
Labels: enhancement

#133 - [ENH] added parallelization to dominance analysis function

Pull Request - State: closed - Opened by eric2302 7 months ago - 2 comments
Labels: enhancement

#132 - Not compatible with `nilearn` version 0.10.1 onwards

Issue - State: closed - Opened by ghisvail 8 months ago - 1 comment

#131 - Not compatible with Python 3.12

Issue - State: closed - Opened by ghisvail 8 months ago - 5 comments

#130 - fix: resolve import error when importing _fetch_files from nilearn

Pull Request - State: closed - Opened by NicolasGensollen 8 months ago - 4 comments

#129 - [MNT] Update readme

Pull Request - State: closed - Opened by liuzhenqi77 9 months ago

#128 - [MNT] Update package structure

Pull Request - State: closed - Opened by liuzhenqi77 9 months ago - 1 comment

#127 - [FIX] Fix deprecation

Pull Request - State: closed - Opened by liuzhenqi77 10 months ago - 2 comments

#126 - [ENH] New stats functions

Pull Request - State: closed - Opened by liuzhenqi77 12 months ago - 2 comments

#125 - Unknown vertices between fsaverage Cammoun regions

Issue - State: open - Opened by avaruuser about 1 year ago

#124 - Error with importing the plotting module

Issue - State: closed - Opened by athantas95 over 1 year ago - 1 comment

#123 - [ENH] Added some network metrics and overall maintenance

Pull Request - State: closed - Opened by liuzhenqi77 over 1 year ago - 1 comment

#122 - Update aspect parameter in plot_point_brain

Issue - State: open - Opened by liuzhenqi77 almost 2 years ago

#121 - [FIX] Fix function naming

Pull Request - State: closed - Opened by liuzhenqi77 almost 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#120 - [DOC] Update docs

Pull Request - State: closed - Opened by liuzhenqi77 almost 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#119 - [MNT] Update versioneer

Pull Request - State: closed - Opened by liuzhenqi77 almost 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#118 - [ENH] Added shortest path override

Pull Request - State: closed - Opened by liuzhenqi77 almost 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#117 - [ENH] Added navigation

Pull Request - State: closed - Opened by liuzhenqi77 almost 2 years ago - 1 comment
Labels: hacktoberfest-accepted

#116 - [ENH] Added shortest path override

Pull Request - State: closed - Opened by liuzhenqi77 about 2 years ago

#115 - [ENH] Added network navigation

Pull Request - State: closed - Opened by liuzhenqi77 about 2 years ago
Labels: hacktoberfest-accepted

#114 - [DOC] Update docs

Pull Request - State: closed - Opened by liuzhenqi77 about 2 years ago
Labels: hacktoberfest-accepted

#113 - Allow return of labelids in find_parcel_centroids

Pull Request - State: open - Opened by pvandyken about 2 years ago

#112 - colormap: how to set it always centered on zero

Issue - State: closed - Opened by weimath about 2 years ago - 2 comments

#111 - [MNT] Import private namespaces if scipy > 1.8.0

Pull Request - State: closed - Opened by VinceBaz over 2 years ago

#110 - Gamma value for consensus partition

Issue - State: closed - Opened by balandongiv almost 3 years ago - 4 comments

#109 - Question: functional consensus return value

Issue - State: closed - Opened by gkiar about 3 years ago - 4 comments

#108 - `fetch_civet` missing from pypi release

Issue - State: closed - Opened by ReinderVosDeWael about 3 years ago - 1 comment

#107 - [FIX] GH Actions

Pull Request - State: closed - Opened by liuzhenqi77 about 3 years ago - 4 comments

#106 - Networks

Pull Request - State: closed - Opened by justinehansen about 3 years ago - 3 comments
Labels: hacktoberfest-accepted

#105 - [ENH] Added distance-dependent cross validation

Pull Request - State: open - Opened by justinehansen about 3 years ago - 1 comment

#104 - Add custom_aspect parameter to plot_point_brain.

Pull Request - State: closed - Opened by VinceBaz over 3 years ago - 6 comments

#103 - Added plot_fslr() function and a yerkes19 fetcher

Pull Request - State: closed - Opened by VinceBaz over 3 years ago - 3 comments

#102 - [ENH] Added rich_feeder_peripheral function

Pull Request - State: closed - Opened by justinehansen over 3 years ago - 2 comments

#101 - [FIX] Fix bug in dominance analysis function

Pull Request - State: closed - Opened by liuzhenqi77 over 3 years ago - 4 comments

#100 - [ENH] Add fetcher for MMP atlas

Pull Request - State: closed - Opened by rmarkello over 3 years ago

#99 - [ENH] Adds function to map CIVET to FreeSurfer

Pull Request - State: closed - Opened by rmarkello over 3 years ago - 1 comment

#98 - [DOC] Added example for plotting on fsaverage surface

Pull Request - State: closed - Opened by liuzhenqi77 over 3 years ago - 6 comments

#97 - [ENH] Added dominance stats function

Pull Request - State: closed - Opened by liuzhenqi77 over 3 years ago - 11 comments

#96 - Add dominance analysis function

Issue - State: closed - Opened by liuzhenqi77 over 3 years ago - 1 comment

#95 - [ENH] Creates plot_fsvertex() function

Pull Request - State: closed - Opened by rmarkello over 3 years ago - 4 comments

#94 - [REF] Allow integer inputs in `freesurfer.parcels_to_vertices()`

Pull Request - State: closed - Opened by rmarkello over 3 years ago - 1 comment

#93 - [ENH] Allows spins with only one hemisphere

Pull Request - State: closed - Opened by rmarkello over 3 years ago - 1 comment

#92 - [TEST] Fix GHA

Pull Request - State: closed - Opened by rmarkello over 3 years ago - 1 comment

#91 - [ENH] Updates stats.efficient_pearsonr to handle NaNs

Pull Request - State: closed - Opened by rmarkello almost 4 years ago - 1 comment

#90 - [ENH] Added data_kws argument to plot_fsaverage

Pull Request - State: closed - Opened by VinceBaz almost 4 years ago - 2 comments

#89 - Added weight option for struct consensus

Pull Request - State: closed - Opened by gkiar almost 4 years ago - 2 comments

#88 - Add `fetch_brain_annotations()` function

Issue - State: closed - Opened by rmarkello about 4 years ago - 2 comments
Labels: enhancement

#87 - [ENH] Improves geodesic parcel centroids

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#86 - Allow spins with only one hemisphere

Issue - State: closed - Opened by rmarkello over 4 years ago

#85 - [ENH] Adds lab-useful colormaps

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 2 comments
Labels: hacktoberfest-accepted

#84 - Conversion to float in freesurfer.parcels_to_vertices

Issue - State: closed - Opened by VinceBaz over 4 years ago - 1 comment

#83 - [ENH] Adds info CSV file to von Economo fetcher

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#82 - [REF] Modifies freesurfer spins

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#81 - [ENH] Adds von Economo-Koskinas atlas fetcher

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#80 - [ENH] add features to plot_mod_heatmap

Pull Request - State: closed - Opened by liuzhenqi77 over 4 years ago - 2 comments

#79 - [FIX] np.nanmean in func consensus when no boot

Pull Request - State: closed - Opened by VinceBaz over 4 years ago - 2 comments

#78 - [REF] Pass through kwargs to plot_fsaverage

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#77 - [FIX] Minor change to spin sample generation

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#76 - [FIX] Fixes pysurfer opacity bug

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#75 - [ENH] Surface centroid calculation

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#74 - [FIX] Fix default fetch_cammoun2012 version

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#73 - [ENH] Add fslr32k schaefer atlases

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#72 - [FIX] Better path finding in nnplot.plot_fsaverage()

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#71 - [REF] Adds fs_LR_32k Cammoun 2012 atlases

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#70 - fetch_fsaverage() downloads in "~\nnt-data\tpl-fsaverage"

Issue - State: closed - Opened by VinceBaz over 4 years ago
Labels: bug

#69 - Can't find fetch_vazquez_rodriguez2019 attribute

Issue - State: closed - Opened by giuliabaracc over 4 years ago - 3 comments

#68 - [FIX] Set aspect on 3D plot no longer valid

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#67 - [REF] Allow precomputed spins for spin_data

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#66 - [REF] Updates FreeSurfer-related spin test functionality

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#65 - [FIX] Fixes parcel dropping in nntools.freesurfer

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#64 - [ENH] Adds fsaverage5/6 annotation files for Cammoun 2012

Pull Request - State: closed - Opened by rmarkello over 4 years ago - 1 comment

#63 - [FIX] Cleans up the code for func_consensus

Pull Request - State: closed - Opened by gshafiei almost 5 years ago - 1 comment

#62 - [ENH] Adds the option to have a list of time series as input in func_…

Pull Request - State: closed - Opened by gshafiei almost 5 years ago - 1 comment

#61 - [ENH] Adds Schaefer 2018 parcellation fetcher

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#60 - [ENH] Updates the NaN color in mayavi for plot_conte69

Pull Request - State: closed - Opened by gshafiei almost 5 years ago - 1 comment

#59 - [ENH] Adds spatial permutation methods for parcellated data

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#58 - [FIX] Corrects data dimension in plot_conte69

Pull Request - State: closed - Opened by gshafiei almost 5 years ago - 1 comment

#57 - [FIX] Sort list of indices in plot_fsaverage

Pull Request - State: closed - Opened by VinceBaz almost 5 years ago

#56 - [ENH,REF] Adds example for spin tests

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#55 - add option to not blank out diagonal in plot_mod_heatmap

Pull Request - State: closed - Opened by koudyk almost 5 years ago - 3 comments

#54 - [ENH] Added 'order' argument

Pull Request - State: closed - Opened by VinceBaz almost 5 years ago - 1 comment

#53 - [REF, ENH] Refactors `nntools.datasets` module

Pull Request - State: closed - Opened by rmarkello almost 5 years ago - 1 comment

#52 - [REF] Minor fixes to resources + FreeSurfer

Pull Request - State: closed - Opened by rmarkello about 5 years ago

#51 - [ENH] Adds `noplot` param to plot_fsaverage()

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment

#49 - [ENH] Adds permutation tests for correlations

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment

#48 - Update fetch_fsaverage to check for FreeSurfer install first

Issue - State: closed - Opened by rmarkello about 5 years ago

#47 - [MNT] Updates installation dependencies

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment

#46 - [ENH] Adds parcellation projection to/reduction from FreeSurfer vertices

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment

#45 - [REF] Updates gen_spinsamples for efficiency

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 2 comments

#44 - Add option to use Leiden algorithm in modularity.consensus_modularity()

Issue - State: open - Opened by rmarkello about 5 years ago
Labels: enhancement

#43 - [DOC] Updates docs in Mirchi example

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 10 comments

#42 - [REF] Reduces memory consumption in Mirchi et al., 2018 example

Pull Request - State: closed - Opened by rmarkello about 5 years ago - 1 comment