Ecosyste.ms: Issues

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GitHub / ness-lab/readcomb issues and pull requests

#21 - Merge Processing to Master

Pull Request - State: closed - Opened by jiyvliu about 4 years ago

#20 - Indel Handling

Pull Request - State: closed - Opened by jiyvliu over 4 years ago

#19 - Add --indels_only functionality to vcfprep

Pull Request - State: closed - Opened by aays over 4 years ago

#18 - Remove SNP filtering from phase change script and create separate VCF processing script

Pull Request - State: closed - Opened by aays over 4 years ago - 1 comment

#17 - Change (e.g. remove) SNP handling

Issue - State: closed - Opened by aays over 4 years ago - 1 comment

#16 - Add indel handling

Issue - State: closed - Opened by aays over 4 years ago - 1 comment

#15 - Add mapping + site quality filtering

Issue - State: closed - Opened by aays over 4 years ago - 2 comments

#14 - Update SNP filtering

Pull Request - State: closed - Opened by aays over 4 years ago

#13 - Make SNP filters more robust

Issue - State: closed - Opened by aays over 4 years ago

#12 - Threading

Pull Request - State: closed - Opened by jiyvliu over 4 years ago

#11 - Add linted script

Pull Request - State: closed - Opened by aays over 4 years ago

#10 - Improve performance with multithreading

Issue - State: closed - Opened by jiyvliu over 4 years ago

#9 - Refactor phase change code to run chromosome by chromosome

Issue - State: closed - Opened by aays over 4 years ago

#8 - add time logging to phase change filter #7

Pull Request - State: closed - Opened by jiyvliu over 4 years ago

#7 - Add time logging to phase change filter

Issue - State: closed - Opened by aays over 4 years ago

#6 - mock data and human readable TODOs #5

Pull Request - State: closed - Opened by jiyvliu over 4 years ago

#5 - Mock data and human readable TODOs

Issue - State: closed - Opened by jiyvliu over 4 years ago - 2 comments

#4 - Revert "Added tests and human readable version of readcomb"

Pull Request - State: closed - Opened by aays over 4 years ago

#3 - Added tests and human readable version of readcomb

Pull Request - State: closed - Opened by jiyvliu over 4 years ago

#2 - Add mate pair phase change detection

Pull Request - State: closed - Opened by jiyvliu over 4 years ago - 1 comment

#1 - Improvements to phase_change_filter.py

Issue - State: closed - Opened by aays almost 5 years ago
Labels: documentation