Ecosyste.ms: Issues

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GitHub / nelpy/nelpy issues and pull requests

#299 - How can I filter warnings?

Issue - State: open - Opened by ckemere 6 months ago - 4 comments

#298 - EventArray generation is broken

Issue - State: open - Opened by ckemere 10 months ago

#297 - FIX replace deprecated np.asscalar

Pull Request - State: open - Opened by kushaangupta almost 2 years ago - 3 comments

#296 - Flattening a BST incorrectly results in empty object

Issue - State: closed - Opened by jchutrue almost 5 years ago - 1 comment

#295 - Basic classes need unbreakable storage

Issue - State: open - Opened by ckemere about 5 years ago - 2 comments
Labels: help wanted, core

#294 - ASA evaluatiuon fails for single argument

Issue - State: closed - Opened by eackermann over 5 years ago - 2 comments

#293 - Averaging across objects

Issue - State: open - Opened by jchutrue over 5 years ago - 1 comment

#292 - Implement trials

Issue - State: open - Opened by jchutrue over 5 years ago - 5 comments

#291 - Implement generic irregular smoothing

Issue - State: open - Opened by eackermann over 5 years ago - 4 comments
Labels: enhancement

#289 - Implement core object mean, min, max, etc. to SMEVA pattern

Issue - State: open - Opened by eackermann over 5 years ago - 2 comments

#288 - Confusing "'fs' has been deprecated; use 'step' instead" warning when creating ASA

Issue - State: open - Opened by eackermann over 5 years ago - 6 comments
Labels: help wanted, core

#287 - Memory leak when creating ASAs repeatedly

Issue - State: closed - Opened by jchutrue over 5 years ago - 2 comments
Labels: invalid, question, core

#286 - Not all attributes propagated when indexing core objects

Issue - State: open - Opened by jchutrue over 5 years ago

#284 - Problematic parameter in RSASA asarray()

Issue - State: open - Opened by jchutrue over 5 years ago - 1 comment
Labels: question, maintenance

#283 - Implement epoch and unit slicing directly for BinnedEventArrays

Issue - State: closed - Opened by jchutrue over 5 years ago - 3 comments
Labels: enhancement, core

#282 - Step parameter not used during RSASA construction

Issue - State: open - Opened by jchutrue over 5 years ago - 6 comments
Labels: bug, maintenance

#281 - Ensure consistent copy mechanism

Issue - State: open - Opened by jchutrue over 5 years ago
Labels: maintenance

#280 - Fix empty event arrays

Issue - State: closed - Opened by jchutrue over 5 years ago - 3 comments
Labels: core, maintenance

#279 - Branch never gets executed in plotting/core.py

Issue - State: closed - Opened by jchutrue over 5 years ago - 1 comment
Labels: plotting, maintenance

#278 - Issue warnings / raise exceptions when casting to BST from ASA

Issue - State: closed - Opened by eackermann over 5 years ago - 9 comments

#276 - querying multidimensional SVEVA returns unexpected value(s)

Issue - State: open - Opened by eackermann over 5 years ago
Labels: bug, core

#275 - Update downsample_analogsignalarray to RegularlySampledAnalogSignalArray

Issue - State: closed - Opened by eackermann almost 6 years ago - 14 comments
Labels: maintenance

#274 - Enhancements for filtering module

Issue - State: closed - Opened by jchutrue almost 6 years ago
Labels: enhancement

#273 - Improve [firing] rate estimation with BARS and GP regression

Issue - State: open - Opened by eackermann almost 6 years ago
Labels: enhancement, help wanted

#272 - Enhancements for nel.utils.get_events_boundaries()

Issue - State: open - Opened by jchutrue almost 6 years ago - 3 comments
Labels: enhancement, maintenance

#271 - Implement downsampling for ndarray and list

Issue - State: closed - Opened by jchutrue almost 6 years ago - 3 comments
Labels: enhancement

#270 - Interpolation can consume too much memory: chunk it

Issue - State: open - Opened by eackermann almost 6 years ago - 1 comment
Labels: enhancement

#268 - Changing the support on BinnedEventArrays does not propagate to binnedSupport

Issue - State: closed - Opened by eackermann almost 6 years ago - 3 comments
Labels: bug, core

#267 - get_PBEs has some failure mode where a local var doesn't exist yet

Issue - State: open - Opened by eackermann almost 6 years ago - 2 comments
Labels: bug

#266 - Decoding analysis should become wrapping aware

Issue - State: open - Opened by eackermann almost 6 years ago - 1 comment
Labels: bug, enhancement

#265 - _unit_subset returns unexpected values

Issue - State: closed - Opened by eackermann almost 6 years ago - 1 comment
Labels: bug, core

#264 - ASA with no time but fs, ignores fs

Issue - State: closed - Opened by eackermann about 6 years ago - 1 comment
Labels: bug, core

#263 - RSASAs.join not implemented and fully linked

Issue - State: open - Opened by eackermann about 6 years ago - 8 comments
Labels: enhancement, core, undergrad

#262 - axis extents are not set / expanded when plotting generalized ASAs

Issue - State: open - Opened by eackermann about 6 years ago - 1 comment
Labels: plotting

#261 - Slow epoch array intersection

Issue - State: closed - Opened by eackermann about 6 years ago - 4 comments
Labels: enhancement

#260 - Slow epoch array complement

Issue - State: closed - Opened by ckemere about 6 years ago - 2 comments
Labels: enhancement

#259 - ImportError: cannot import name 'PoissonHMM'

Issue - State: closed - Opened by drsax93 about 6 years ago - 3 comments

#258 - refactor STA._time to _data for loc

Issue - State: closed - Opened by eackermann about 6 years ago - 1 comment
Labels: bug, enhancement, core

#257 - EpochArray + (addition) does not merge... desired?

Issue - State: closed - Opened by eackermann over 6 years ago - 2 comments
Labels: bug, help wanted, core

#256 - EpochArray.intersect merges epochs before intersecting

Issue - State: closed - Opened by eackermann over 6 years ago - 1 comment
Labels: core

#255 - revisit event array family

Issue - State: closed - Opened by eackermann over 6 years ago - 2 comments

#254 - change RinglikeTrajectory to derive from PositionArray

Issue - State: closed - Opened by eackermann over 6 years ago - 1 comment

#253 - Modify Kalman filter to explicitly allow weighting the model or the observations more

Issue - State: open - Opened by eackermann over 6 years ago - 2 comments
Labels: enhancement

#252 - Slicing a derived AnalogSignalArray returns a pure AnalogSignalArray

Issue - State: closed - Opened by eackermann over 6 years ago - 1 comment
Labels: bug, core

#251 - filtering error message when some epochs are too short is noninformative

Issue - State: open - Opened by eackermann over 6 years ago - 8 comments
Labels: enhancement, question

#250 - Notch filter not implemented in nelpy.filtering.sosfiltfilt

Issue - State: closed - Opened by avrodriguez over 6 years ago - 4 comments
Labels: enhancement

#249 - adding two SpikeTrainArrays doesn't preserve unit_ids!!!?

Issue - State: open - Opened by eackermann over 6 years ago - 1 comment
Labels: bug, core

#248 - Pickled lambda functions cause kernel deaths

Issue - State: closed - Opened by eackermann over 6 years ago - 1 comment
Labels: bug, core

#247 - TuningCurveXD can return misleading error "value less than ymin" etc. with interpolation

Issue - State: closed - Opened by eackermann over 6 years ago - 2 comments
Labels: bug, core

#246 - AnalogSignalArray.subsample() can create duplicate timestamps

Issue - State: open - Opened by eackermann over 6 years ago
Labels: bug, core

#245 - get_events_boundaries skips some events

Issue - State: closed - Opened by eackermann over 6 years ago - 1 comment
Labels: bug, core

#244 - EpochDataSlicer remembers old parent

Issue - State: closed - Opened by eackermann almost 7 years ago - 5 comments
Labels: bug, help wanted, question, core

#243 - Should EpochArrays be merged automatically on join?

Issue - State: closed - Opened by eackermann almost 7 years ago - 3 comments
Labels: help wanted, question

#242 - refactor AnalogSignalArray for units others than time

Issue - State: closed - Opened by eackermann almost 7 years ago - 1 comment
Labels: enhancement

#241 - smoothing TuningCurve2D with Gaussian lowers firing rate

Issue - State: open - Opened by eackermann almost 7 years ago - 1 comment
Labels: enhancement, help wanted, core

#240 - Refactor ASA.downsample() to make use of new filtering module

Issue - State: closed - Opened by eackermann almost 7 years ago - 2 comments
Labels: undergrad

#239 - TuningCurve improvements

Issue - State: open - Opened by eackermann almost 7 years ago - 2 comments

#238 - smooth place fields etc with nans

Issue - State: open - Opened by eackermann almost 7 years ago - 1 comment
Labels: enhancement

#237 - untraceable function call in hmmlearn.score_samples from predict_proba

Issue - State: closed - Opened by eackermann almost 7 years ago - 1 comment
Labels: bug, help wanted, core

#236 - sort EpochArrays by default after concatenating

Issue - State: closed - Opened by eackermann almost 7 years ago - 1 comment

#235 - implement drop_empty_segments() for AnalogSignalArray

Issue - State: closed - Opened by eackermann almost 7 years ago - 3 comments

#234 - EpochArray.domain inconsistency

Issue - State: closed - Opened by eackermann almost 7 years ago - 1 comment
Labels: bug

#233 - Fixed PrettyDuration

Pull Request - State: closed - Opened by iomidiran almost 7 years ago

#232 - signal envelope1D uses copy instead of deepcopy; mutates calling object

Issue - State: closed - Opened by jchutrue almost 7 years ago - 1 comment
Labels: bug

#231 - update nelpy.filtering to cheby2sos

Issue - State: closed - Opened by eackermann almost 7 years ago - 1 comment
Labels: enhancement, core

#230 - PrettyDuration has weird behavior for certain numbers

Issue - State: closed - Opened by eackermann almost 7 years ago - 3 comments
Labels: bug

#229 - when slicing and restricting BSTs, self-attached metadata gets lost

Issue - State: closed - Opened by eackermann about 7 years ago - 6 comments
Labels: bug

#226 - Nelpy version 2 with proper buffer protocol

Issue - State: open - Opened by eackermann about 7 years ago - 1 comment
Labels: enhancement, core

#213 - Empty AnalogSignalArray slices lose their n_signals data

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment
Labels: bug

#206 - Fix up empty AnalogSignalArray

Issue - State: closed - Opened by eackermann over 7 years ago - 3 comments
Labels: bug, core

#200 - binnedsupport needs to be updated when partitioning

Issue - State: open - Opened by eackermann over 7 years ago - 2 comments
Labels: bug, core

#198 - multidimensional slice indexing

Issue - State: open - Opened by eackermann over 7 years ago - 3 comments
Labels: core

#180 - Change fs to be only data-dependent, and not an external property linking tdata and time

Issue - State: closed - Opened by eackermann over 7 years ago - 2 comments
Labels: core

#179 - AnalogSignalArray.time not computed correctly

Issue - State: closed - Opened by eackermann over 7 years ago - 2 comments
Labels: bug, core

#169 - Re-visit ripple_filter's default parameters

Issue - State: closed - Opened by eackermann over 7 years ago - 2 comments
Labels: enhancement

#167 - coerce ASA computations to scalars when possible

Issue - State: open - Opened by eackermann over 7 years ago - 3 comments
Labels: core

#160 - Remove requested interpolation points that fall outside a signal's support in asarray

Issue - State: open - Opened by eackermann over 7 years ago - 1 comment
Labels: enhancement, core

#159 - refactor bayesian.decode to support tuning curves beyond 1D

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment
Labels: enhancement, core

#154 - generate synthetic test data

Issue - State: closed - Opened by eackermann over 7 years ago - 3 comments
Labels: enhancement, help wanted

#147 - inherit from AnalogSignalArray for state sequences

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment
Labels: core, plotting, hmm

#130 - reevaluate nelpy.min api interface

Issue - State: closed - Opened by eackermann over 7 years ago - 2 comments

#121 - modify clip to use empty pattern as well

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment

#119 - update score() to work on a per-sequence basis

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment
Labels: hmm

#117 - Consider renaming (globally) fs and to add fs_new as meta data

Issue - State: closed - Opened by eackermann over 7 years ago - 3 comments
Labels: enhancement, core

#106 - AnalogSignalArray Input Handling

Issue - State: closed - Opened by shayokdutta over 7 years ago - 2 comments
Labels: enhancement, core

#104 - implement PHMM.sample()

Issue - State: open - Opened by eackermann over 7 years ago - 1 comment
Labels: hmm

#100 - Add EventArray indexing to AnalogSignalArray

Issue - State: open - Opened by eackermann over 7 years ago - 9 comments
Labels: core

#95 - remove own copy functions, and use copy and deepcopy

Issue - State: closed - Opened by eackermann over 7 years ago - 3 comments
Labels: core

#94 - relax unit_ids to not have to be integer?

Issue - State: open - Opened by eackermann over 7 years ago - 6 comments
Labels: enhancement

#85 - Add __attributes__ pattern and empty object pattern

Issue - State: closed - Opened by eackermann over 7 years ago - 15 comments
Labels: core

#79 - Improve slicing efficiency of SpikeTrain objects

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment
Labels: enhancement

#77 - upgrade (as optional dependency) to bottleneck

Issue - State: open - Opened by eackermann over 7 years ago - 1 comment
Labels: enhancement

#73 - write test generators with pytest

Issue - State: closed - Opened by eackermann over 7 years ago - 3 comments
Labels: test this

#71 - Consider using interval trees for computational speed-up

Issue - State: closed - Opened by eackermann over 7 years ago - 2 comments
Labels: enhancement

#41 - long_description cannot find README.md in the pypi setup

Issue - State: closed - Opened by eackermann over 7 years ago
Labels: bug

#29 - Add rate function place holder to spiketrain objects

Issue - State: closed - Opened by eackermann over 7 years ago - 1 comment