Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nel-lab/mesmerize-core issues and pull requests

#323 - Analyzing TIFF files with time frames < 500

Issue - State: open - Opened by ViciousPlants about 2 months ago - 12 comments

#321 - Use F order when reshaping masks

Pull Request - State: closed - Opened by ethanbb 3 months ago - 2 comments

#320 - dimensionality error

Issue - State: closed - Opened by vkonan 4 months ago - 5 comments

#319 - Exporting RCM as a .TIFF

Issue - State: closed - Opened by vkonan 4 months ago - 3 comments

#318 - Current status of mesmerize-viz and fastplotlib?

Issue - State: closed - Opened by FlynnOConnell 4 months ago - 2 comments

#316 - Downstream analysis?

Issue - State: open - Opened by Agrajag1984 5 months ago - 5 comments

#309 - Don't filter out NaNs for contours

Pull Request - State: open - Opened by ethanbb 6 months ago - 8 comments

#307 - Kernel unexpectedly dying; line of code: viz_cnmf.show

Issue - State: closed - Opened by CharlotteWenxin 7 months ago - 16 comments

#306 - caimanmanager install no longer working with SciPy 1.14

Issue - State: closed - Opened by gusmihaian 7 months ago - 1 comment

#304 - Use Path.resolve() consistently to prevent UNC/drive letter ambiguity

Pull Request - State: open - Opened by ethanbb 7 months ago - 1 comment

#302 - mcorr_cnmf notebook running cnmf error

Issue - State: closed - Opened by CharlotteWenxin 7 months ago - 2 comments

#301 - installation problem

Issue - State: closed - Opened by CharlotteWenxin 7 months ago - 3 comments

#300 - Fix motion correction and CNMF for 3D movies

Pull Request - State: open - Opened by ethanbb 7 months ago - 4 comments

#299 - More changes for nested parameters

Pull Request - State: closed - Opened by ethanbb 7 months ago - 1 comment

#298 - Run items using SLURM; save batches with platform-independent paths

Pull Request - State: closed - Opened by ethanbb 8 months ago - 8 comments

#297 - Allow non-hashable types and nested params in get_params_diffs

Pull Request - State: closed - Opened by ethanbb 8 months ago - 4 comments

#296 - Motion correction output F order only

Issue - State: closed - Opened by zhouyi0812 10 months ago - 1 comment

#295 - error: zerodivisionerror

Issue - State: closed - Opened by zhouyi0812 10 months ago - 4 comments

#294 - What is the detrend_df_f function

Issue - State: closed - Opened by qweasdf1354 10 months ago - 1 comment

#292 - No matching distribution found for LazyTiff

Issue - State: closed - Opened by lea-danics 11 months ago - 5 comments

#290 - Module 'fpl' has no attribute 'ImageWidget'

Issue - State: closed - Opened by lea-danics 11 months ago - 2 comments

#285 - Error while running demo notebood 'mcorr_cnmf'

Issue - State: closed - Opened by pbl007 11 months ago - 3 comments

#284 - AttributeError: 'TiffPageSeries' object has no attribute 'levels'

Issue - State: closed - Opened by zhouyi0812 11 months ago - 5 comments

#283 - ModuleNotFoundError: No module named 'mesmerize_viz'

Issue - State: closed - Opened by zhouyi0812 11 months ago - 3 comments

#282 - corr-pnr plot not accepting 'controllers' variable

Issue - State: closed - Opened by blogeman 11 months ago - 6 comments

#281 - IndexError

Issue - State: closed - Opened by Frank497 11 months ago - 2 comments

#280 - motion correction failed

Issue - State: closed - Opened by Frank497 11 months ago - 5 comments

#279 - int32 not sufficient for nbytes

Pull Request - State: closed - Opened by nspiller 11 months ago - 3 comments

#278 - widget wont load

Issue - State: closed - Opened by blogeman 11 months ago - 6 comments

#277 - demo for downstream analysis

Issue - State: closed - Opened by zhouyi0812 11 months ago - 3 comments

#276 - Computer crashes with cnmf.run_detrend_dfof

Issue - State: closed - Opened by restrepd 11 months ago - 2 comments

#275 - Error in loop cnmfe

Issue - State: closed - Opened by zhouyi0812 12 months ago - 3 comments

#274 - extract mcorr movie as tiff

Issue - State: closed - Opened by Jorgenhoyer 12 months ago - 4 comments

#273 - problem with caiman.remove_item

Issue - State: closed - Opened by Jorgenhoyer 12 months ago - 4 comments

#272 - Issues with mesmerize Execution: Missing Packages in Active Conda Environment

Issue - State: closed - Opened by Tepps-ps 12 months ago - 19 comments

#271 - `python: command not found error` when calling runfile

Issue - State: open - Opened by vncntprvst 12 months ago - 1 comment

#270 - run_eval output

Issue - State: closed - Opened by zhouyi0812 12 months ago - 10 comments

#269 - How to adjust n_processes in mescore

Issue - State: closed - Opened by zhouyi0812 12 months ago - 1 comment

#268 - Rename the output from mescore?

Issue - State: closed - Opened by zhouyi0812 12 months ago - 8 comments

#267 - Plots not displaying with a RTX A2000 on Windows

Issue - State: closed - Opened by JohnStout 12 months ago - 18 comments

#266 - install mescore on computer

Issue - State: closed - Opened by zhouyi0812 12 months ago - 2 comments

#265 - continued quality assessment through mescore

Issue - State: closed - Opened by zhouyi0812 12 months ago - 4 comments

#264 - CNMFE process dies silently without any error traceback

Issue - State: closed - Opened by X4ndri about 1 year ago - 2 comments

#263 - Explanation for warning message

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 7 comments

#262 - Question about 1p data processing

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 3 comments

#261 - Issue with cnmfe notebook with fastplotlib

Issue - State: closed - Opened by JohnStout about 1 year ago - 3 comments

#260 - Getting denoised dF/F

Issue - State: closed - Opened by kingmiaomiao about 1 year ago - 6 comments

#259 - Assessing the noise level before gsig_filt

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 6 comments

#258 - Evaluate Bleaching on the movie

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 5 comments

#257 - Movie path and caiman path can be different?

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 2 comments

#256 - Kernel unexpectedly dying; line of code: viz_cnmf.show(sidecar=True)

Issue - State: closed - Opened by santicolom about 1 year ago - 10 comments

#255 - NotImplementedError: cannot instantiate 'PosixPath' on your system

Issue - State: closed - Opened by qweasdf1354 about 1 year ago - 3 comments

#254 - AttributeError: 'TiffPageSeries' object has no attribute 'levels'

Issue - State: closed - Opened by santicolom about 1 year ago - 2 comments

#251 - Error when play the motion correction with new notebook

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 2 comments

#250 - Jupyter Notebook only uses 50% CPU

Issue - State: closed - Opened by bashsyr about 1 year ago - 5 comments

#249 - Could I manually set the eval? using the code

Issue - State: closed - Opened by qweasdf1354 about 1 year ago - 5 comments

#248 - How to get z score of raw and deltaF/F

Issue - State: closed - Opened by qweasdf1354 about 1 year ago - 4 comments

#247 - TraitError: Setting min > max when viz_cnmf = df.cnmf.viz() viz_cnmf.show()

Issue - State: closed - Opened by qweasdf1354 about 1 year ago - 8 comments

#246 - Consider using pytorch for LazyVideo instead of decord

Issue - State: closed - Opened by kushalkolar about 1 year ago - 1 comment

#245 - Add component eval instructions to notebook

Issue - State: closed - Opened by kushalkolar about 1 year ago - 1 comment

#244 - Batch error unsuccessful

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 49 comments

#242 - reorganize demos, use mesviz

Pull Request - State: closed - Opened by kushalkolar about 1 year ago

#241 - gSig_filter used twice in demo

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 2 comments

#239 - cnmfe component evaluation load batch hdf5 vs. mmap file

Issue - State: closed - Opened by zhouyi0812 about 1 year ago - 2 comments

#238 - Small fixes

Pull Request - State: closed - Opened by kushalkolar about 1 year ago

#237 - Installation discrepancies with Caiman

Issue - State: closed - Opened by kfouke1 about 1 year ago - 25 comments

#235 - Import hdf5 file with mes

Issue - State: closed - Opened by zhouyi0812 over 1 year ago - 36 comments

#234 - Use mescore namespace in demos

Issue - State: closed - Opened by kushalkolar over 1 year ago

#232 - Do not export unnecessary conda env vars, use conda run

Pull Request - State: closed - Opened by rly over 1 year ago - 5 comments

#231 - Tests are failing

Issue - State: open - Opened by rly over 1 year ago - 1 comment

#230 - Missing CONDA_PREFIX_1 env var to run cnmfe notebook on macOS

Issue - State: closed - Opened by rly over 1 year ago - 6 comments

#229 - TraitError in cnmfe notebook

Issue - State: closed - Opened by rly over 1 year ago - 1 comment

#228 - Update install instructions for caimanmanager

Pull Request - State: closed - Opened by rly over 1 year ago - 2 comments

#226 - playing with pynapple

Pull Request - State: open - Opened by kushalkolar over 1 year ago - 1 comment

#225 - start simple.ipynb

Pull Request - State: open - Opened by kushalkolar over 1 year ago

#224 - make a very simple nb

Issue - State: closed - Opened by kushalkolar over 1 year ago - 1 comment

#223 - eval nb progress

Pull Request - State: closed - Opened by kushalkolar over 1 year ago - 2 comments

#222 - probably unecessary code cell in example jupyter nb

Issue - State: closed - Opened by kushalkolar over 1 year ago

#221 - build issues

Issue - State: open - Opened by kushalkolar over 1 year ago

#220 - Running mcorr doesn't computer pnr image

Issue - State: closed - Opened by X4ndri over 1 year ago - 2 comments

#219 - Unable to install mesmerize_core

Issue - State: closed - Opened by zhouyi0812 over 1 year ago - 7 comments

#218 - update notebooks

Pull Request - State: closed - Opened by clewis7 over 1 year ago - 5 comments

#217 - Issues with ImageWidget.plot

Issue - State: closed - Opened by asharma11 over 1 year ago - 6 comments

#216 - Error displaying widget when visualize raw & MCorr movie side-by-side

Issue - State: closed - Opened by kingmiaomiao over 1 year ago - 13 comments

#215 - Updating demo notebooks with latest fastplotlib version

Issue - State: closed - Opened by cardinLL over 1 year ago - 9 comments

#213 - update nbs to use latest fastplotlib and mesmerize-viz

Issue - State: closed - Opened by kushalkolar over 1 year ago - 1 comment