Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ncsu-landscape-dynamics/rpops issues and pull requests

#209 - update rounding for overpopulations

Pull Request - State: closed - Opened by ChrisJones687 2 months ago

#208 - Use rounding in quarantine

Pull Request - State: closed - Opened by ChrisJones687 2 months ago

#207 - Lite

Pull Request - State: open - Opened by cyborginhas 2 months ago

#206 - Update to PoPS Core with explicit casts

Pull Request - State: closed - Opened by wenzeslaus 3 months ago - 2 comments

#205 - Use rounding for non-stochastic dispersers from cell

Pull Request - State: closed - Opened by wenzeslaus 3 months ago - 1 comment

#204 - Use rounding for mortality

Pull Request - State: open - Opened by wenzeslaus 3 months ago

#203 - Use rounding for treatments

Pull Request - State: open - Opened by wenzeslaus 3 months ago

#202 - Pass multiple random seeds to pops-core

Pull Request - State: closed - Opened by petrasovaa 10 months ago

#201 - added na.rm =TRUE to any checks for raster data.

Pull Request - State: closed - Opened by ChrisJones687 11 months ago - 1 comment

#200 - fix probablistic weather

Pull Request - State: closed - Opened by ChrisJones687 11 months ago - 1 comment

#199 - Update checks.R

Pull Request - State: closed - Opened by John-Polo 12 months ago

#198 - Fix county level calibration

Pull Request - State: closed - Opened by ChrisJones687 12 months ago - 1 comment

#197 - Updated pest_host_table_list to include susceptibility and mortality rate means and sd

Pull Request - State: closed - Opened by cyborginhas about 1 year ago - 2 comments

#196 - Pull request to add in county level data for calibration and running the model

Pull Request - State: closed - Opened by ChrisJones687 about 1 year ago - 2 comments

#195 - Created pest_host_table_list_creator helper function

Pull Request - State: closed - Opened by cyborginhas about 1 year ago - 2 comments

#194 - Return dispers from multirun

Issue - State: open - Opened by ChrisJones687 about 1 year ago
Labels: enhancement

#193 - Add uncertainty to pest host table

Issue - State: closed - Opened by ChrisJones687 about 1 year ago

#192 - Update multiple seeds to work

Issue - State: open - Opened by ChrisJones687 about 1 year ago

#192 - Update multiple seeds to work

Issue - State: open - Opened by ChrisJones687 about 1 year ago

#191 - Add a parameter to control cell infestability

Issue - State: open - Opened by agimenezromero about 1 year ago - 1 comment

#190 - Add an option for annual timestep

Issue - State: open - Opened by agimenezromero about 1 year ago - 1 comment

#189 - Decouple the establishment and reproduction/dispersal terms

Issue - State: open - Opened by agimenezromero about 1 year ago - 1 comment

#188 - Multi host2

Pull Request - State: closed - Opened by ChrisJones687 about 1 year ago

#187 - Remove raster, rgdal, sp packages from dependencies

Pull Request - State: closed - Opened by petrasovaa about 1 year ago - 3 comments

#186 - Use multihost API with single host

Pull Request - State: closed - Opened by petrasovaa about 1 year ago - 11 comments

#185 - Add function for network file creation

Issue - State: open - Opened by ChrisJones687 over 1 year ago

#184 - Fix write seeds

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 2 comments

#183 - written random_seeds file shouldn't have row names

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#182 - simplify and fix creation of rasters within foreach loops

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 1 comment

#181 - Polygon level calibration

Issue - State: open - Opened by ChrisJones687 over 1 year ago - 1 comment
Labels: enhancement

#179 - R seeds write

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 1 comment

#178 - Add soils

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 2 comments

#177 - Remove raster, sp, and rgdal from suggests and imports

Issue - State: closed - Opened by ChrisJones687 over 1 year ago - 1 comment

#176 - Fix r cmd check on github actions windows.

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#175 - write out random seeds csv for use later.

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#174 - Write out all ensemble members option

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#173 - Refactor

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 3 comments

#172 - Add tests for new functionality

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#171 - seperate seeds for random sections within r.

Issue - State: open - Opened by ChrisJones687 over 1 year ago

#170 - Refactor helpers and checks

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#169 - Update soils to take soils from user

Issue - State: closed - Opened by ChrisJones687 over 1 year ago

#168 - Update core

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago

#167 - Add quarantine direction parameter from pops-core

Pull Request - State: closed - Opened by petrasovaa over 1 year ago

#166 - update versions

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 1 comment

#165 - update renv, r, and all packages

Pull Request - State: closed - Opened by ChrisJones687 over 1 year ago - 1 comment

#164 - Treatment optimization

Pull Request - State: closed - Opened by petrasovaa almost 2 years ago - 1 comment

#163 - Add final_step as valid option in configuration checks

Pull Request - State: closed - Opened by petrasovaa almost 2 years ago - 1 comment

#162 - fix quarantine output in multirun

Pull Request - State: closed - Opened by petrasovaa almost 2 years ago - 1 comment

#161 - update mcc with checks

Pull Request - State: closed - Opened by ChrisJones687 almost 2 years ago - 1 comment

#160 - mcc calculation doesn't work with smal sample size

Issue - State: closed - Opened by ChrisJones687 almost 2 years ago

#159 - Update packages

Pull Request - State: closed - Opened by ChrisJones687 about 2 years ago - 1 comment

#158 - only print used stats for calibration

Issue - State: closed - Opened by ChrisJones687 about 2 years ago

#157 - Fixes 156

Pull Request - State: closed - Opened by ChrisJones687 about 2 years ago - 2 comments

#156 - Return which file doesn't exist for errors

Issue - State: closed - Opened by ChrisJones687 about 2 years ago

#155 - fixed errors when using 2 layer raster with uncertainty = TRUE

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#153 - New cal metrics

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#152 - fixed multi metric calibrations

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#151 - Host and intitial condition uncertainty

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#150 - Update cal options

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#149 - Cal adjustment

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#147 - Update core

Pull Request - State: closed - Opened by ChrisJones687 over 2 years ago - 1 comment

#146 - Fix draw params

Pull Request - State: closed - Opened by ChrisJones687 almost 3 years ago

#145 - Added Mathews Correlation Coefficient as a calibration statistic to use.

Pull Request - State: closed - Opened by ChrisJones687 almost 3 years ago - 2 comments

#144 - Update packages and match new terra naming

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago - 1 comment

#143 - Add calibrate tests

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago - 1 comment

#142 - Add erads functions

Issue - State: open - Opened by ChrisJones687 about 3 years ago
Labels: enhancement

#141 - fix mcmc parameter order

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago - 1 comment

#140 - Cal network

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago - 1 comment

#139 - Update R-CMD-check.yaml

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago

#138 - Update README.md

Pull Request - State: closed - Opened by ChrisJones687 about 3 years ago

#137 - fixed small typo that prevented PoPS download

Pull Request - State: closed - Opened by cyborginhas about 3 years ago

#136 - make frequency and bool config to reduce # of parameters in pops.cpp …

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#135 - Have linter fail on warnings in CI

Issue - State: closed - Opened by ChrisJones687 over 3 years ago
Labels: documentation

#134 - Add tests

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#133 - Write all

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment
Labels: hacktoberfest-accepted

#132 - Return error

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#131 - Update to network version of PoPS Core

Pull Request - State: closed - Opened by wenzeslaus over 3 years ago - 1 comment

#130 - Auto select thresholds

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment
Labels: hacktoberfest-accepted

#129 - Update docs

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#128 - add vingette example

Issue - State: open - Opened by ChrisJones687 over 3 years ago
Labels: documentation

#127 - Update documentation based on user feedback

Issue - State: closed - Opened by ChrisJones687 over 3 years ago
Labels: documentation

#126 - Have model automatically choose correct threshold starting values

Issue - State: closed - Opened by ChrisJones687 over 3 years ago
Labels: enhancement

#125 - Use renv to manage developement environment

Issue - State: closed - Opened by ChrisJones687 over 3 years ago
Labels: enhancement

#124 - Add new metrics and point comparison option to validation

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#123 - Main update

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago

#122 - updated to pops-core 1.1

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago

#121 - Multiple val outputs

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment
Labels: enhancement

#120 - Add support to write out each year of validation in addition to cumulative validation

Issue - State: closed - Opened by ChrisJones687 over 3 years ago
Labels: enhancement

#119 - Outputs spatially incomplete under certain scenarios.

Issue - State: closed - Opened by ChrisJones687 over 3 years ago - 2 comments

#118 - Update core

Pull Request - State: closed - Opened by ChrisJones687 over 3 years ago - 1 comment

#117 - Write out all_simulations from multirun

Issue - State: closed - Opened by nkruskamp over 3 years ago - 2 comments
Labels: enhancement

#115 - segfault with large files (type vrt, maybe others?)

Issue - State: closed - Opened by nkruskamp almost 4 years ago - 6 comments

#114 - fixed tif saves in multirun

Pull Request - State: closed - Opened by nkruskamp almost 4 years ago

#113 - Total host

Pull Request - State: closed - Opened by ChrisJones687 almost 4 years ago

#112 - Host mask

Pull Request - State: closed - Opened by ChrisJones687 almost 4 years ago

#111 - Save outputs

Pull Request - State: closed - Opened by ChrisJones687 almost 4 years ago - 1 comment

#110 - Use host as initial mask

Issue - State: closed - Opened by ChrisJones687 almost 4 years ago
Labels: enhancement