ncbi/icn3d issues and pull requests

#119 - Add files via upload

Pull Request - State: closed - Opened by th3linja 10 days ago

#118 - Collections update - fix gz and zip functionality

Pull Request - State: closed - Opened by th3linja 20 days ago

#117 - iCn3D 3.40.1 - collections update

Pull Request - State: closed - Opened by th3linja about 1 month ago

#116 - Bump braces and gulp

Pull Request - State: open - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#115 - Collections update - multi format zip, export, gz

Pull Request - State: closed - Opened by th3linja 2 months ago

#114 - Multistructure collections update

Pull Request - State: closed - Opened by th3linja 10 months ago

#113 - "load url" command broken in icn3d_3.29.5

Issue - State: closed - Opened by ssorgatem 12 months ago - 1 comment

#112 - MTZ maps don't load properly /don't behave the same as other formats

Issue - State: closed - Opened by ssorgatem almost 1 year ago - 6 comments

#111 - Add codespell config + CI action to catch typos, make it also fix some typos it found

Pull Request - State: open - Opened by yarikoptic about 1 year ago

#110 - Fixed formatting

Pull Request - State: closed - Opened by th3linja about 1 year ago

#109 - Collections update

Pull Request - State: closed - Opened by th3linja about 1 year ago

#108 - Collections update

Pull Request - State: closed - Opened by th3linja about 1 year ago - 2 comments

#107 - Bonds between atoms are appearing as thick black tubes

Issue - State: closed - Opened by digitalbio over 1 year ago - 2 comments

#106 - Mutation annotations

Issue - State: closed - Opened by msierk almost 2 years ago - 6 comments

#105 - URL not displaying desired annotation

Issue - State: closed - Opened by digitaltodd almost 2 years ago - 1 comment

#104 - The 3D structure information for mutations doesn't always match the info in the 2D representation

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#103 - Bump decode-uri-component from 0.2.0 to 0.2.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#102 - secondary structures are not being expressed in web page

Issue - State: closed - Opened by danny2551515 about 2 years ago - 4 comments

#101 - Legends do not appear for hydrophobicity if Wimley-White is chosen

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#100 - What do the colors mean for B factor?

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#99 - Color by Residue legend has uracil spelled wrong and is missing the X

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#98 - The hydrophocity legend should contain information about hydrophobicity

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#97 - Please fix the spelling in Legend for Color by Charge

Issue - State: closed - Opened by digitalbio about 2 years ago - 1 comment

#96 - Legend - Coloring by Atom - show complete names

Issue - State: closed - Opened by digitalbio about 2 years ago - 2 comments

#95 - Inquiry drawing drawing a path from one residue to another residue

Issue - State: closed - Opened by juexinwang about 2 years ago - 9 comments

#94 - Is there a command or function that can enable to display PAE map?

Issue - State: closed - Opened by danny2551515 about 2 years ago - 2 comments

#93 - 3.17.1

Pull Request - State: closed - Opened by th3linja about 2 years ago

#92 - Customize menus doesn't work as expected

Issue - State: closed - Opened by digitalbio about 2 years ago - 3 comments
Labels: bug

#91 - Unable to show selected chemicals when using Chrome

Issue - State: closed - Opened by digitalbio about 2 years ago - 3 comments
Labels: Not a bug

#90 - Chemical display isn't right

Issue - State: closed - Opened by digitalbio about 2 years ago - 7 comments
Labels: enhancement

#89 - 3.16.4 by Jack Lin: Added color legends and Smith-Watman local alignment

Pull Request - State: closed - Opened by jiywang3 about 2 years ago

#88 - Open AlphaFold PAE file with latest result file

Issue - State: closed - Opened by danny2551515 about 2 years ago - 2 comments
Labels: bug

#87 - Ideas for improving the cartoon

Issue - State: closed - Opened by ctrlcctrlv over 2 years ago - 6 comments
Labels: enhancement

#86 - Viewing predicted mutations in aligned structures

Issue - State: closed - Opened by digitalbio over 2 years ago - 3 comments
Labels: enhancement

#85 - Could we apply a "lock" to keep something hidden?

Issue - State: closed - Opened by digitalbio over 2 years ago - 1 comment
Labels: enhancement

#84 - Bump terser from 5.10.0 to 5.14.2

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#83 - selecting sugars and other chemicals

Issue - State: closed - Opened by digitalbio over 2 years ago - 2 comments

#82 - Problem with viewing structures side by side

Issue - State: closed - Opened by digitalbio over 2 years ago - 2 comments

#81 - Feature request: support mmcif via URL

Issue - State: closed - Opened by alpha-omega-labs over 2 years ago - 3 comments

#80 - React support

Issue - State: closed - Opened by daniaki over 2 years ago - 15 comments

#79 - Unable to select and highlight domain in aligned structures

Issue - State: closed - Opened by digitalbio over 2 years ago - 2 comments

#78 - JS Widget missing images

Issue - State: closed - Opened by OtimusOne almost 3 years ago - 3 comments

#77 - Cysteine disulfide bonds always visible

Issue - State: closed - Opened by OtimusOne almost 3 years ago - 5 comments
Labels: enhancement

#76 - Unable to use command: jupyter labextension install jupyterlab_3dmol

Issue - State: closed - Opened by jls043 about 3 years ago - 10 comments

#75 - Feature request - export selected residues and a count as a text file

Issue - State: closed - Opened by digitalbio about 3 years ago - 3 comments

#74 - Unable to remove membrane objects

Issue - State: closed - Opened by digitalbio about 3 years ago - 1 comment

#73 - Unable to reset information in the 2D Diagram viewer

Issue - State: closed - Opened by digitalbio about 3 years ago - 2 comments

#72 - The membrane information should be hidden by default

Issue - State: closed - Opened by digitalbio about 3 years ago - 7 comments
Labels: wontfix

#71 - Style changes aren't applied to selection

Issue - State: open - Opened by digitalbio about 3 years ago - 6 comments
Labels: enhancement

#70 - Browser control / alt key issues

Issue - State: open - Opened by digitaltodd about 3 years ago - 2 comments
Labels: enhancement

#69 - The amino acid names in on the X axis of the 2D interaction map are too difficult to read

Issue - State: closed - Opened by digitalbio about 3 years ago - 4 comments

#68 - The Alternate key doesn't always work

Issue - State: closed - Opened by digitalbio about 3 years ago - 2 comments
Labels: wontfix

#67 - The highlight for a chain name goes away when the second chain in an aligned pair is selected.

Issue - State: open - Opened by digitalbio about 3 years ago - 1 comment
Labels: enhancement

#66 - Selecting and coloring one chains changes the color in all unselected chains too

Issue - State: closed - Opened by digitalbio about 3 years ago - 2 comments

#65 - Can't hide sidechains

Issue - State: closed - Opened by digitalbio about 3 years ago - 6 comments
Labels: wontfix

#64 - Working with alignments crashes or hangs Firefox

Issue - State: open - Opened by digitalbio about 3 years ago - 5 comments
Labels: enhancement

#63 - Confusion with structure alignments

Issue - State: closed - Opened by digitalbio about 3 years ago - 6 comments
Labels: wontfix

#62 - Select by Distance is not working with metals

Issue - State: closed - Opened by digitalbio about 3 years ago - 3 comments

#61 - Can the atom element labels be the same size? See the image

Issue - State: closed - Opened by digitalbio about 3 years ago - 4 comments

#60 - Clicking "Toggle Highlight" causes my selected amino acids to jump out of the view

Issue - State: closed - Opened by digitalbio about 3 years ago - 3 comments

#59 - Unable limit labels to selected residues

Issue - State: closed - Opened by digitalbio about 3 years ago - 2 comments

#58 - Can we get rid of the dropshadow on annotations?

Issue - State: open - Opened by digitalbio about 3 years ago - 1 comment
Labels: enhancement

#57 - The Disulfide bond annotations are in the Sequences and Annotations section are incorrect. Some cysteines are not shown and residues without sulfur are annotated as containing disulfide bonds.

Issue - State: closed - Opened by digitalbio about 3 years ago - 3 comments

#56 - Links from the chain names to the NCBI protein database seem to be broken

Issue - State: closed - Opened by digitalbio over 3 years ago - 4 comments
Labels: wontfix

#55 - Atom element labels remain visible when view selection is chosen.

Issue - State: open - Opened by digitalbio over 3 years ago - 1 comment
Labels: enhancement

#54 - Highlights disappear when I choose View selection - but molecule is still selected

Issue - State: closed - Opened by digitalbio over 3 years ago - 1 comment
Labels: wontfix

#53 - Label by atom hides everything but the label

Issue - State: closed - Opened by digitalbio over 3 years ago - 3 comments