Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / navis-org/pymaid issues and pull requests

#248 - Fix link types

Pull Request - State: closed - Opened by schlegelp 3 months ago - 1 comment

#247 - Client session for fetching data from CATMAID throws an error

Issue - State: open - Opened by Marei33 6 months ago - 9 comments

#246 - Bump setuptools from 57.5.0 to 65.5.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#245 - connection to server reset by peer during get_neuron call

Issue - State: open - Opened by rbetzel 8 months ago - 5 comments

#244 - pymaid.get_annotation_details fails with exception

Issue - State: open - Opened by pnewstein 8 months ago - 4 comments

#243 - Exporting skeletons as object files

Issue - State: open - Opened by conochur 8 months ago - 3 comments

#241 - Nearest node

Pull Request - State: open - Opened by perlman about 1 year ago

#239 - Drop python 3.7, 3.8

Pull Request - State: open - Opened by clbarnes over 1 year ago - 3 comments

#238 - Fetching image data from N5 sources

Issue - State: closed - Opened by clbarnes over 1 year ago - 2 comments

#237 - Neuron label

Pull Request - State: closed - Opened by clbarnes over 1 year ago

#236 - Neuron label logic

Issue - State: closed - Opened by clbarnes over 1 year ago - 2 comments

#235 - Use CATMAID stack info to create xarray.DataArrays

Pull Request - State: closed - Opened by clbarnes over 1 year ago

#234 - Landmark match

Pull Request - State: closed - Opened by clbarnes over 1 year ago

#233 - get_volume uses mesh IDs, not volume IDs

Issue - State: open - Opened by clbarnes over 1 year ago

#232 - Deprecate get_annotation_graph for get_entity_graph

Pull Request - State: closed - Opened by clbarnes over 1 year ago - 4 comments

#231 - Paginate get_entity_graph response as it's very slow

Issue - State: open - Opened by clbarnes almost 2 years ago - 1 comment

#230 - Pymaid seems incompatible with numpy 1.24.0

Issue - State: closed - Opened by jialumaomao almost 2 years ago - 3 comments

#229 - get_skids_by_name with empty list

Issue - State: open - Opened by clbarnes almost 2 years ago

#228 - Add get_skeleton_ids to api.rst

Pull Request - State: closed - Opened by clbarnes almost 2 years ago

#227 - function for list_skeletons endpoint

Pull Request - State: closed - Opened by clbarnes almost 2 years ago - 1 comment

#226 - Annotation graph fixes, logging normalisation

Pull Request - State: closed - Opened by clbarnes about 2 years ago - 1 comment

#225 - docs: update igraph installation instructions

Pull Request - State: closed - Opened by szhorvat about 2 years ago - 2 comments

#224 - Docs broken

Issue - State: open - Opened by clbarnes about 2 years ago

#223 - Landmarks

Pull Request - State: closed - Opened by clbarnes about 2 years ago

#222 - Update versions in gha

Pull Request - State: closed - Opened by clbarnes about 2 years ago

#221 - Do not use regex for exact annotation name matches

Pull Request - State: closed - Opened by clbarnes about 2 years ago - 1 comment

#219 - Leaked Semaphore Objects when running Navis.cut_skeleton

Issue - State: open - Opened by thejordanrivers about 2 years ago - 1 comment

#218 - Unable to fetch data from Platynereis Dataset

Issue - State: open - Opened by kareef928 over 2 years ago - 5 comments

#217 - TypeError when trying to fetch connectors

Issue - State: closed - Opened by bdpedigo over 2 years ago - 3 comments

#216 - `heal_skeleton` replaced `heal_fragmented_neuron`.

Pull Request - State: closed - Opened by perlman almost 3 years ago - 1 comment

#215 - requests.exceptions.ConnectionError:

Issue - State: closed - Opened by dadanhan about 3 years ago - 11 comments

#214 - navis.cable_overlap on axon/dendrite fragments - non-unique neuron ID problem?

Issue - State: closed - Opened by kuanawanda about 3 years ago - 4 comments

#212 - pymaid.connectivity.cable_overlap raises KeyError exception

Issue - State: closed - Opened by kuanawanda over 3 years ago - 2 comments

#211 - KeyError: 13 when using 'get_connectors_between'

Issue - State: closed - Opened by cytheria43 over 3 years ago - 7 comments

#209 - module 'pymaid' has no attribute 'split_axon_dendrite' (and others)

Issue - State: closed - Opened by eddie2612 almost 4 years ago - 6 comments

#208 - module 'pymaid' has no attribute 'Viewer'

Issue - State: closed - Opened by michaelsmclayton almost 4 years ago - 5 comments

#207 - get_node_list in delete_nodes sometimes fails to get connector link IDs

Issue - State: closed - Opened by jasper-tms almost 4 years ago - 3 comments

#206 - module 'pymaid' has no attribute 'CatmaidInstance'

Issue - State: open - Opened by pgibb96 almost 4 years ago - 31 comments

#205 - Update master to 2.0.0

Pull Request - State: closed - Opened by schlegelp almost 4 years ago

#203 - Test pymaid 0.2.0

Issue - State: closed - Opened by schlegelp about 4 years ago - 5 comments

#202 - Incorporate Jasper's upload changes

Pull Request - State: closed - Opened by schlegelp about 4 years ago

#201 - 'DataFrame' object has no attribute 'ix' index

Issue - State: closed - Opened by SridharJagannathan about 4 years ago - 2 comments

#200 - Remove non ASCII characters

Pull Request - State: closed - Opened by nilsec about 4 years ago - 1 comment

#199 - Improvement to upload_neuron's handling of connectors and connector tags

Pull Request - State: closed - Opened by jasper-tms about 4 years ago - 8 comments

#198 - Enabling sets as arguments to pymaid functions

Pull Request - State: closed - Opened by jasper-tms over 4 years ago - 1 comment

#196 - Improving the behavior of upload_neuron when using import_connectors=True

Issue - State: closed - Opened by jasper-tms over 4 years ago - 3 comments

#195 - Improvement: write cache to disk

Issue - State: open - Opened by schlegelp almost 5 years ago - 3 comments
Labels: enhancement

#194 - fafb.find_autoseg_fragments fails to execute

Issue - State: closed - Opened by Erginkayam about 5 years ago - 2 comments

#193 - New CATMAID error handling

Issue - State: open - Opened by clbarnes about 5 years ago - 1 comment

#192 - pymaid.cluster_xyz

Issue - State: open - Opened by ArefZarin over 5 years ago - 2 comments
Labels: question

#191 - cluster_by_synapse_placement

Issue - State: open - Opened by ArefZarin over 5 years ago - 2 comments
Labels: question

#190 - Update vispy to 0.6.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#189 - Update numpy to 1.17.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#188 - Update pyqt5 to 5.13.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#187 - Update pypng to 0.0.20

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#186 - Update plotly to 4.0.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#185 - Update pyqt5 to 5.12.3

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#184 - Update tqdm to 4.32.2

Pull Request - State: closed - Opened by pyup-bot over 5 years ago

#183 - Update requests_futures to 1.0.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#182 - swc spec link re-directed

Issue - State: closed - Opened by zhihaozheng over 5 years ago - 1 comment

#181 - Update plotly to 3.10.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#180 - Update numpy to 1.16.4

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#179 - Update matplotlib to 3.1.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago

#178 - Update scipy to 1.3.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#177 - Update requests to 2.22.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#176 - Update ipykernel to 5.1.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#175 - Update tqdm to 4.32.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#174 - Update tqdm to 4.32.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#173 - Update plotly to 3.9.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#172 - Update pyqt5 to 5.12.2

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#171 - improve stitch_neurons

Issue - State: open - Opened by schlegelp over 5 years ago
Labels: enhancement

#170 - Pin numpydoc to latest version 0.9.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#169 - Update setuptools to 41.0.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#168 - Update numpy to 1.16.3

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#167 - Pin numpydoc to latest version 0.9.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#166 - Update plotly to 3.8.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#165 - write direct SWC import for b3d

Issue - State: open - Opened by schlegelp over 5 years ago - 4 comments
Labels: enhancement

#164 - Update plotly to 3.8.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#163 - Update networkx to 2.3

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#162 - Update setuptools to 41.0.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#161 - Update setuptools to 40.9.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 2 comments

#160 - Pin sphinx_bootstrap_theme to latest version 0.7.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#159 - Update pyqt5 to 5.12.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#158 - Update plotly to 3.7.1

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#157 - Update pandas to 0.24.2

Pull Request - State: closed - Opened by pyup-bot over 5 years ago

#156 - Update plotly to 3.7.0

Pull Request - State: closed - Opened by pyup-bot over 5 years ago - 1 comment

#155 - Update matplotlib to 3.0.3

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 1 comment

#154 - Update numpy to 1.16.2

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 1 comment

#153 - Update tqdm to 4.31.1

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 2 comments

#152 - Update pyqt5 to 5.12

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 2 comments

#146 - Update pandas to 0.24.1

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago

#142 - Update numpy to 1.16.1

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 1 comment

#137 - Pin nbsphinx to latest version 0.4.2

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago - 1 comment

#133 - Update jupyter_contrib_nbextensions to 0.5.1

Pull Request - State: closed - Opened by pyup-bot almost 6 years ago