Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / navis-org/navis issues and pull requests

#158 - Swap docs to MkDocs

Pull Request - State: closed - Opened by schlegelp 2 months ago - 6 comments

#157 - Improve plotting

Pull Request - State: closed - Opened by schlegelp 2 months ago - 1 comment

#155 - Improve subset neurons

Pull Request - State: closed - Opened by schlegelp 3 months ago

#154 - Issue with memory de-allocation

Issue - State: open - Opened by schlegelp 3 months ago - 1 comment

#153 - Version 2 Roadmap

Issue - State: closed - Opened by schlegelp 3 months ago - 7 comments
Labels: enhancement

#152 - navis.mesh() multiprocessing error

Issue - State: closed - Opened by lankiszhang 3 months ago - 3 comments

#151 - Feature request: support NWB format

Issue - State: open - Opened by schlegelp 3 months ago

#150 - Integrate fastcore functions

Pull Request - State: closed - Opened by schlegelp 4 months ago - 1 comment

#149 - docs(README): precomputed link neuroglancer repo

Pull Request - State: closed - Opened by guspan-tanadi 4 months ago - 1 comment

#148 - fixes for neuromorpho interface

Pull Request - State: open - Opened by jakobtroidl 6 months ago - 3 comments

#147 - Switch documentation to mkdocs + mkdocs material

Issue - State: open - Opened by schlegelp 7 months ago - 6 comments
Labels: enhancement

#145 - disallow Dotprops for `write_swc`

Issue - State: closed - Opened by schlegelp 9 months ago - 2 comments

#142 - Remove conditional igraph tests

Pull Request - State: open - Opened by clbarnes 9 months ago

#141 - Remove no-igraph tests

Pull Request - State: closed - Opened by clbarnes 9 months ago

#140 - Test against python 3.12

Pull Request - State: open - Opened by clbarnes 10 months ago - 1 comment

#139 - igraph usage

Issue - State: open - Opened by clbarnes 10 months ago - 2 comments

#138 - Switch to pygfx?

Issue - State: open - Opened by schlegelp 10 months ago - 1 comment

#134 - Parquet skeletons

Issue - State: open - Opened by clbarnes 12 months ago - 4 comments
Labels: enhancement

#133 - NeuronConnector (clean git history)

Pull Request - State: closed - Opened by clbarnes 12 months ago

#132 - Proposal: delay graph generation for skeletons

Pull Request - State: closed - Opened by schlegelp 12 months ago - 1 comment

#131 - Fix pandas version to <2

Pull Request - State: closed - Opened by clbarnes 12 months ago - 2 comments

#130 - New Feature for xform_brain: on-the-fly shortcuts for multi-transform chains

Issue - State: open - Opened by schlegelp 12 months ago
Labels: enhancement

#129 - CI: Update python versions

Pull Request - State: closed - Opened by clbarnes about 1 year ago - 3 comments

#128 - requirements: use pandas >= 2

Pull Request - State: open - Opened by clbarnes about 1 year ago - 4 comments

#126 - NML export

Pull Request - State: open - Opened by perlman about 1 year ago - 1 comment

#125 - Skip plotting empty TreeNeuron in plotly

Pull Request - State: closed - Opened by floesche about 1 year ago - 1 comment

#124 - neuprint: Two fixes

Pull Request - State: closed - Opened by stuarteberg about 1 year ago - 5 comments

#123 - split_axon_dendrite fails for big neurons

Issue - State: open - Opened by katie-marquand about 1 year ago - 2 comments
Labels: bug

#122 - downsample_neuron does not reassign connectors

Issue - State: open - Opened by katie-marquand about 1 year ago

#121 - Traversal model make new nodes which is not in edges

Issue - State: closed - Opened by LeeJinmook over 1 year ago - 5 comments

#120 - IntEnum for treenode-connector relationships

Pull Request - State: open - Opened by clbarnes over 1 year ago - 2 comments

#119 - NeuronConnector class for connectivity of TreeNeurons

Pull Request - State: closed - Opened by clbarnes over 1 year ago - 5 comments

#118 - Avoid potential divide by zero error

Pull Request - State: closed - Opened by Robbie1977 over 1 year ago - 1 comment

#117 - models: fix Bayesian traversal model and test

Pull Request - State: closed - Opened by aschampion almost 2 years ago - 2 comments

#116 - build(deps): bump setuptools from 57.5.0 to 65.5.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#115 - New numpy version leads to AttributeError

Issue - State: closed - Opened by jakobtroidl almost 2 years ago - 5 comments

#114 - fix #113

Pull Request - State: closed - Opened by pnewstein almost 2 years ago - 1 comment

#113 - Custom colored connectors in plot2d is broken

Issue - State: closed - Opened by pnewstein almost 2 years ago

#112 - Set DYLD_LIBRARY_PATH for elastix on MacOS

Issue - State: closed - Opened by jasper-tms almost 2 years ago - 2 comments

#111 - Hackathon: dask backend

Pull Request - State: open - Opened by aschampion almost 2 years ago - 1 comment

#110 - SWC io: DFS-sort nodes, optionally do not reindex

Pull Request - State: open - Opened by clbarnes almost 2 years ago - 5 comments

#109 - Add tags=None to TreeNeurons

Pull Request - State: closed - Opened by clbarnes almost 2 years ago - 1 comment

#108 - Thoughts on synblast

Issue - State: open - Opened by clbarnes almost 2 years ago - 1 comment

#107 - Test against python 3.10

Pull Request - State: closed - Opened by clbarnes almost 2 years ago - 1 comment

#106 - Use conventional logger names when NAVIS_SKIP_LOG_SETUP

Pull Request - State: closed - Opened by clbarnes almost 2 years ago - 1 comment

#105 - Minor: documentation on navis.Volume

Issue - State: open - Opened by mwinding almost 2 years ago - 1 comment

#104 - Fix in network traversal models

Pull Request - State: closed - Opened by dokato about 2 years ago - 1 comment

#103 - Miscellaneous hackathon fixes

Pull Request - State: closed - Opened by aschampion about 2 years ago - 2 comments

#102 - cut_skeleton memory issues

Issue - State: closed - Opened by dadanhan about 2 years ago - 2 comments

#101 - improve scoring function generation with large sets of neurons

Pull Request - State: closed - Opened by schlegelp over 2 years ago

#100 - Fix tests

Pull Request - State: closed - Opened by schlegelp over 2 years ago

#99 - Update r.py

Pull Request - State: closed - Opened by azatian over 2 years ago - 1 comment

#98 - NBLAST v1 added from Kohl et al 13

Pull Request - State: closed - Opened by dokato over 2 years ago - 2 comments

#97 - Make nbl.smat.LookupNdBuilder more generic

Issue - State: open - Opened by clbarnes over 2 years ago - 2 comments

#96 - Fix bug in plotting/plotly/graph_objs.py

Pull Request - State: closed - Opened by antortjim over 2 years ago - 1 comment

#95 - New system for ultrastructural features

Issue - State: open - Opened by schlegelp over 2 years ago
Labels: enhancement

#94 - Make function signatures more consistent

Issue - State: open - Opened by schlegelp over 2 years ago
Labels: enhancement

#93 - Bug changing connector size in navis.2d_plot()

Issue - State: closed - Opened by mwinding over 2 years ago - 2 comments

#92 - New feature: split connectivity

Issue - State: open - Opened by schlegelp over 2 years ago - 3 comments

#91 - read_swc: strange behaviour when file path contains typo

Issue - State: open - Opened by schlegelp over 2 years ago - 2 comments

#90 - Vispy extras and docs

Pull Request - State: closed - Opened by clbarnes over 2 years ago - 6 comments

#89 - improve strahler_index

Issue - State: open - Opened by schlegelp over 2 years ago - 4 comments

#88 - Use extreqs package for parsing extras from reqs

Pull Request - State: closed - Opened by clbarnes over 2 years ago - 1 comment

#87 - [WIP] Shared memory for NBLAST

Pull Request - State: open - Opened by schlegelp over 2 years ago - 13 comments

#86 - use *some other vispy backend* instead of pyqt5

Pull Request - State: closed - Opened by clbarnes over 2 years ago - 12 comments

#85 - Fix PendingDeprecationWarning around node remapping

Pull Request - State: closed - Opened by clbarnes over 2 years ago - 1 comment

#84 - Mapping TreeNeuron presynapses to postsynaptic bodyID

Issue - State: closed - Opened by jakobtroidl over 2 years ago - 2 comments

#83 - Advice for M1 mac installation

Issue - State: open - Opened by swilson27 over 2 years ago - 8 comments

#82 - Excitatory / Inhibitory information about synapses in neuprint

Issue - State: closed - Opened by jakobtroidl over 2 years ago - 2 comments

#81 - Handle symlinked `transformix` executables

Issue - State: closed - Opened by jasper-tms over 2 years ago - 1 comment

#80 - Graphviz fix

Pull Request - State: closed - Opened by clbarnes over 2 years ago - 8 comments

#79 - Error in navis.plot3d when radius = True

Issue - State: closed - Opened by kuanawanda over 2 years ago - 3 comments

#78 - Update meshing.py

Pull Request - State: closed - Opened by standardgalactic over 2 years ago - 4 comments

#77 - feature request: cable_overlap returns neuron or node_list

Issue - State: closed - Opened by kuanawanda almost 3 years ago - 2 comments

#76 - color skeleton branches by the strahler index in blender

Issue - State: closed - Opened by artxz almost 3 years ago - 2 comments

#75 - The MiCrONS Datasets tutorial

Issue - State: closed - Opened by aquineuro almost 3 years ago - 11 comments

#74 - Blender Blobs from Neuromorpho

Issue - State: closed - Opened by psynaptix1 almost 3 years ago - 3 comments

#73 - Neuromorpho neuron fetch

Issue - State: closed - Opened by psynaptix1 almost 3 years ago - 1 comment

#72 - models: add BayesianTraversalModel

Pull Request - State: closed - Opened by aschampion almost 3 years ago - 2 comments

#71 - split_axon_dendrite not generating errors and just quiting

Issue - State: closed - Opened by dadanhan almost 3 years ago - 7 comments

#70 - Fix to prevent rounding with fraction voxels

Pull Request - State: closed - Opened by Robbie1977 almost 3 years ago

#69 - NBLAST score matrix builder v2

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 20 comments

#68 - Neuron docs

Pull Request - State: closed - Opened by schlegelp almost 3 years ago

#67 - Add dashboard to explore NBLAST results

Issue - State: open - Opened by schlegelp almost 3 years ago
Labels: enhancement

#66 - Return IDs of neurons appended to {N,Syn}Blaster

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 1 comment

#65 - Fix deepcopy(my_base_neuron)

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 1 comment

#64 - Add {read,write}_h5 to API docs

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 4 comments

#63 - Meaning of presynaptic and postsynaptic connectors

Issue - State: closed - Opened by dadanhan almost 3 years ago - 8 comments

#62 - blender integration macosX

Issue - State: closed - Opened by fcollman almost 3 years ago - 7 comments

#61 - plot_flat not an attribute of navis

Issue - State: closed - Opened by dadanhan almost 3 years ago - 2 comments

#60 - Merge dev into master

Pull Request - State: closed - Opened by schlegelp almost 3 years ago

#59 - Fix ncollpyde in readthedocs

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 6 comments

#58 - Basic io.write_nrrd implementation

Pull Request - State: closed - Opened by clbarnes almost 3 years ago - 1 comment

#57 - Merge master into dev

Pull Request - State: closed - Opened by schlegelp about 3 years ago

#56 - fix for other OS path separators

Pull Request - State: closed - Opened by Robbie1977 about 3 years ago - 1 comment

#55 - Citing navis

Issue - State: closed - Opened by bdpedigo about 3 years ago - 2 comments

#54 - add clusters parameter for plotting

Issue - State: closed - Opened by schlegelp about 3 years ago - 1 comment

#53 - Break navis into submodules

Issue - State: open - Opened by schlegelp about 3 years ago

#52 - Dotprops plotting: improve scale vector

Issue - State: closed - Opened by schlegelp over 3 years ago - 2 comments
Labels: enhancement