Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / natverse/nat issues and pull requests

#518 - igraph dfs may signal unreachable nodes with 0

Pull Request - State: open - Opened by jefferis about 1 year ago - 1 comment

#517 - Compatibility with igraph 2.0.0

Issue - State: open - Opened by krlmlr about 1 year ago - 20 comments

#516 - Create CODE_OF_CONDUCT.md

Pull Request - State: closed - Opened by schlegelp about 1 year ago - 1 comment

#515 - WIP first version of tps speedup

Pull Request - State: open - Opened by jefferis over 1 year ago - 1 comment

#514 - Feature/write mesh fixes

Pull Request - State: closed - Opened by jefferis over 1 year ago - 1 comment

#513 - plotly wire3d() no longer working after upgrading from nat 1.8.22 to 1.10.4

Issue - State: closed - Opened by Jsalas424 over 1 year ago - 2 comments

#512 - Fix test of attribute length mismatch for new igraph

Pull Request - State: closed - Opened by jefferis about 2 years ago - 1 comment

#509 - bug in get_distance_to_soma

Issue - State: open - Opened by dokato about 2 years ago

#508 - Change rgl.* calls to *3d

Pull Request - State: closed - Opened by dmurdoch about 2 years ago - 5 comments

#507 - Switching off patch in codecov

Pull Request - State: closed - Opened by dokato over 2 years ago - 5 comments

#506 - ngraph operations inform when not a neuron is passed as an argument

Pull Request - State: closed - Opened by dokato over 2 years ago - 3 comments

#505 - consider adding a `nid()` function to handle numeric ids

Issue - State: open - Opened by jefferis over 2 years ago
Labels: question

#504 - Fix/matching by col numeric

Pull Request - State: closed - Opened by jefferis over 2 years ago - 3 comments

#503 - fix bug in matching by first column

Issue - State: closed - Opened by jefferis over 2 years ago

#502 - [ENH] topoDotprops modified

Pull Request - State: open - Opened by dokato over 2 years ago - 2 comments

#501 - WIP: added withMeta parameter to nlapply

Pull Request - State: open - Opened by dokato over 2 years ago - 2 comments

#500 - nlapply to include metadata from data.frame

Issue - State: open - Opened by dokato over 2 years ago

#499 - write.neurons saves matadata by default

Pull Request - State: open - Opened by dokato over 2 years ago - 1 comment

#498 - [WIP] units

Pull Request - State: open - Opened by dokato over 2 years ago

#497 - Igraph fix, moe -> neimode

Pull Request - State: closed - Opened by alexanderbates over 2 years ago - 3 comments

#496 - Changed neimode argument to mode

Pull Request - State: closed - Opened by dokato almost 3 years ago - 1 comment

#495 - Seglist updated to the latest igraph version

Pull Request - State: closed - Opened by dokato almost 3 years ago - 2 comments

#494 - Need to integrate as.seglist test fix in CRAN release

Issue - State: closed - Opened by jefferis almost 3 years ago - 6 comments

#493 - Minor edit of stitch_neurons edge cases

Pull Request - State: closed - Opened by dokato almost 3 years ago - 3 comments

#492 - Making as.seglist compatible with R/igraph 1.3.0

Pull Request - State: closed - Opened by dokato almost 3 years ago - 1 comment

#491 - Future igraph will consider the null graph disconnected

Issue - State: closed - Opened by szhorvat almost 3 years ago - 1 comment

#490 - Undesired output when stitching with an empty neuronlist

Issue - State: closed - Opened by dokato almost 3 years ago - 1 comment

#489 - subset neuronlist doesn't work with functions

Issue - State: closed - Opened by dokato almost 3 years ago - 3 comments

#488 - Fix handling of null elements in xyzmatrix.list

Pull Request - State: closed - Opened by jefferis almost 3 years ago - 1 comment

#487 - WIP read in metadata

Pull Request - State: open - Opened by jefferis about 3 years ago - 1 comment

#486 - Support for 3-vector in xyzmatrix.default

Pull Request - State: closed - Opened by jefferis about 3 years ago - 1 comment

#485 - Add xyzmatrix2list xyzmatrix<-.list

Pull Request - State: closed - Opened by jefferis about 3 years ago - 1 comment

#484 - fixes in xyzmatrix.list

Pull Request - State: closed - Opened by jefferis over 3 years ago - 1 comment

#483 - write neurons save metadata by default

Issue - State: open - Opened by dokato over 3 years ago - 1 comment

#482 - WIP: added hxsurf addition

Pull Request - State: closed - Opened by dokato over 3 years ago - 2 comments

#481 - 1.8 (not for merge)

Pull Request - State: open - Opened by jefferis over 3 years ago

#480 - Teach write.neuron(s) to put metadata in SWC header

Pull Request - State: closed - Opened by jefferis over 3 years ago - 2 comments

#479 - Fixes for issues revealed by GitHub Actions check

Pull Request - State: closed - Opened by jefferis over 3 years ago - 1 comment

#478 - Add windows build to github actions

Issue - State: open - Opened by jefferis over 3 years ago - 2 comments

#477 - GitHub actions with codecov

Pull Request - State: closed - Opened by dokato over 3 years ago - 2 comments

#476 - Feature/GitHub actions2

Pull Request - State: closed - Opened by jefferis over 3 years ago

#475 - GitHub actions with coveralls

Pull Request - State: closed - Opened by dokato over 3 years ago - 11 comments

#474 - Feature natcpp

Pull Request - State: closed - Opened by jefferis over 3 years ago - 2 comments

#473 - WIP speedups using natcpp

Pull Request - State: closed - Opened by jefferis over 3 years ago - 1 comment

#472 - Speeding up simplify_neuron

Pull Request - State: closed - Opened by dokato over 3 years ago - 7 comments

#471 - improve performance of simplify_neuron

Issue - State: closed - Opened by dokato over 3 years ago - 4 comments

#470 - Support for units in nat

Issue - State: open - Opened by dokato over 3 years ago - 1 comment

#469 - Allow xyzmatrix method to assign by rownames

Issue - State: open - Opened by dokato over 3 years ago - 1 comment

#468 - [add] print method for neuronlistz

Pull Request - State: closed - Opened by dokato over 3 years ago - 6 comments

#467 - Neurons matched by first column in case of generic row names in…

Pull Request - State: closed - Opened by dokato over 3 years ago - 4 comments

#466 - add print method for neuronlistz

Issue - State: closed - Opened by dokato over 3 years ago

#465 - Minor SO fix

Pull Request - State: closed - Opened by dokato over 3 years ago - 1 comment

#464 - Strahler order fails on a simplified neuron with no branches

Issue - State: closed - Opened by dokato over 3 years ago - 3 comments

#463 - function for rerooting neuron

Pull Request - State: closed - Opened by dokato over 3 years ago - 11 comments

#462 - [add] ntrees to summary

Pull Request - State: closed - Opened by dokato over 3 years ago - 2 comments

#461 - nTrees in summary

Issue - State: closed - Opened by dokato over 3 years ago - 1 comment

#460 - Minor fix in topo dotprops

Pull Request - State: closed - Opened by dokato over 3 years ago - 3 comments

#459 - topo.dotprops added

Pull Request - State: closed - Opened by dokato over 3 years ago - 3 comments

#458 - Fix/neuronlistz

Pull Request - State: closed - Opened by jefferis almost 4 years ago - 2 comments

#457 - bug in multiplication for neuronlistz

Issue - State: closed - Opened by jefferis almost 4 years ago - 1 comment
Labels: bug

#456 - neuronlistz - fast access to neuronlists stored as zip files

Pull Request - State: closed - Opened by jefferis almost 4 years ago - 2 comments

#455 - pointsinside: defer check for Rvcg until committed to use it

Pull Request - State: closed - Opened by jefferis about 4 years ago - 1 comment

#454 - pointsinside for bounding box should not require Rvcg

Issue - State: closed - Opened by jefferis about 4 years ago

#453 - Basic implementation of monolithic DB1 format for neuronlistfh

Pull Request - State: closed - Opened by jefferis about 4 years ago - 6 comments

#452 - Zip command line character limit error fix

Pull Request - State: closed - Opened by jonmarty about 4 years ago - 6 comments

#451 - Fix/xyz.character nas

Pull Request - State: closed - Opened by jefferis about 4 years ago - 3 comments

#450 - First trial of github-action

Pull Request - State: closed - Opened by jefferis about 4 years ago - 4 comments

#449 - Feature/xyzmatrix.character

Pull Request - State: closed - Opened by jefferis about 4 years ago - 1 comment

#448 - Improve reading of Simple Neurite Tracer fills

Pull Request - State: closed - Opened by jefferis about 4 years ago - 1 comment

#447 - "pan3d()" not found

Issue - State: closed - Opened by artxz over 4 years ago - 4 comments

#446 - Improve printing for multiclass neuronlist

Issue - State: open - Opened by jefferis over 4 years ago
Labels: bug

#445 - Bad triangle numbers

Issue - State: closed - Opened by PostPreAndCleft over 4 years ago - 3 comments

#444 - Fix test failure in R 4.1 for c.neuronlist

Issue - State: closed - Opened by jefferis over 4 years ago

#443 - Add print.neuron,neuronlist,dotprops methods

Pull Request - State: closed - Opened by jefferis over 4 years ago - 1 comment

#442 - Improved support for neurons as meshes (WIP)

Pull Request - State: closed - Opened by jefferis over 4 years ago - 1 comment

#441 - Better support for reading / plotting neuron meshes

Issue - State: closed - Opened by jefferis over 4 years ago - 2 comments
Labels: enhancement

#440 - support for zip files specified by an URL that does not end in .zip

Issue - State: open - Opened by jefferis over 4 years ago - 1 comment
Labels: enhancement

#439 - Implement support for neuroglancer visualisation

Issue - State: open - Opened by SridharJagannathan over 4 years ago - 3 comments

#438 - Feature/elastix

Pull Request - State: open - Opened by jefferis over 4 years ago - 1 comment

#437 - Make neuronlistfh/remotesync downloads more robust

Issue - State: open - Opened by jefferis over 4 years ago

#435 - optimise stitching neurons function

Issue - State: open - Opened by SridharJagannathan over 4 years ago

#434 - Consider adding geodesic_distances function

Issue - State: open - Opened by jefferis over 4 years ago - 1 comment
Labels: enhancement

#433 - Bug in xyzmatrix for 0 row data.frames

Issue - State: closed - Opened by jefferis almost 5 years ago

#432 - Updated parameter for toggling grid lines in plotly

Pull Request - State: closed - Opened by SridharJagannathan almost 5 years ago - 3 comments

#431 - Add support for Amira hxsurf binary format

Pull Request - State: closed - Opened by jefferis almost 5 years ago - 1 comment

#430 - improve error message for cmtk.version

Issue - State: closed - Opened by dempseyg447 almost 5 years ago - 1 comment

#429 - Support binary HyperSurface files in read.hxsurf

Issue - State: open - Opened by jefferis almost 5 years ago

#428 - Remaining items to move from elmr

Pull Request - State: closed - Opened by jefferis almost 5 years ago - 1 comment

#427 - Turn off grid lines when using plotly engine

Issue - State: closed - Opened by alexanderbates almost 5 years ago - 2 comments

#426 - Remove duplicate overlap / overlap_score functions

Issue - State: closed - Opened by jefferis almost 5 years ago - 2 comments

#425 - as.seglist.igraph is slow

Issue - State: closed - Opened by jefferis about 5 years ago

#424 - Feature/elmr features

Pull Request - State: closed - Opened by SridharJagannathan about 5 years ago - 2 comments

#423 - Move features to nat from other packages

Issue - State: closed - Opened by SridharJagannathan about 5 years ago - 3 comments

#422 - Feature/wireframe

Pull Request - State: closed - Opened by SridharJagannathan about 5 years ago - 6 comments

#421 - Implement 3d- wireframe plot in plotly

Issue - State: closed - Opened by SridharJagannathan about 5 years ago
Labels: enhancement

#420 - teach dotprops.character to handle multiple input files

Issue - State: closed - Opened by jefferis about 5 years ago

#419 - add xyzmatrix.shapelist3d method

Issue - State: closed - Opened by jefferis about 5 years ago - 2 comments