Ecosyste.ms: Issues

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GitHub / natir/variantplaner issues and pull requests

#45 - Pull request to follow progress of 0.3.0

Pull Request - State: closed - Opened by natir 10 months ago

#45 - Pull request to follow progress of 0.3.0

Pull Request - State: closed - Opened by natir 10 months ago

#44 - Question about "variantplaner struct genotypes"

Issue - State: closed - Opened by ehenrion 10 months ago - 4 comments

#44 - Question about "variantplaner struct genotypes"

Issue - State: closed - Opened by ehenrion 10 months ago - 4 comments

#42 - bug: Genotype structuration error

Issue - State: closed - Opened by ehenrion 11 months ago - 15 comments
Labels: not reproduce

#42 - bug: Genotype structuration error

Issue - State: closed - Opened by ehenrion 11 months ago - 15 comments
Labels: not reproduce

#41 - bug: polars.exceptions.ComputeError: Conversion from `i64` to `u16` failed

Issue - State: closed - Opened by ehenrion 11 months ago - 1 comment

#41 - bug: polars.exceptions.ComputeError: Conversion from `i64` to `u16` failed

Issue - State: closed - Opened by ehenrion 11 months ago - 1 comment

#40 - bug: Memory allocation failed

Issue - State: closed - Opened by antonylebechec about 1 year ago - 1 comment

#40 - bug: Memory allocation failed

Issue - State: closed - Opened by antonylebechec about 1 year ago - 1 comment

#39 - feature: Check chrom length within VCF header

Issue - State: closed - Opened by antonylebechec about 1 year ago - 2 comments
Labels: enhancement

#39 - feature: Check chrom length within VCF header

Issue - State: closed - Opened by antonylebechec about 1 year ago - 2 comments
Labels: enhancement

#38 - bug: install with pip bug

Issue - State: closed - Opened by antonylebechec about 1 year ago - 3 comments
Labels: bug

#38 - bug: install with pip bug

Issue - State: closed - Opened by antonylebechec about 1 year ago - 3 comments
Labels: bug

#36 - variantplaner vcf2parquet "memory allocation of .. bytes failed" with the tutorial dataset

Issue - State: closed - Opened by ehenrion about 1 year ago - 14 comments
Labels: bug, documentation, not reproduce

#36 - variantplaner vcf2parquet "memory allocation of .. bytes failed" with the tutorial dataset

Issue - State: closed - Opened by ehenrion about 1 year ago - 14 comments
Labels: bug, documentation, not reproduce

#35 - VariantPlaner 0.2.1 installation failed

Issue - State: closed - Opened by ehenrion about 1 year ago - 3 comments
Labels: bug, reproduce

#35 - VariantPlaner 0.2.1 installation failed

Issue - State: closed - Opened by ehenrion about 1 year ago - 3 comments
Labels: bug, reproduce

#34 - New API

Issue - State: closed - Opened by natir about 1 year ago

#34 - New API

Issue - State: closed - Opened by natir about 1 year ago

#33 - New CLI

Issue - State: closed - Opened by natir about 1 year ago - 2 comments

#33 - New CLI

Issue - State: closed - Opened by natir about 1 year ago - 2 comments

#32 - Support more than diployde in transmission.

Pull Request - State: closed - Opened by natir about 1 year ago

#32 - Support more than diployde in transmission.

Pull Request - State: closed - Opened by natir about 1 year ago

#31 - Use 'real_pos' to get more local genotype partitioning

Issue - State: closed - Opened by natir about 1 year ago

#31 - Use 'real_pos' to get more local genotype partitioning

Issue - State: closed - Opened by natir about 1 year ago

#30 - Faster genotype partitioning

Issue - State: closed - Opened by natir about 1 year ago
Labels: enhancement

#30 - Faster genotype partitioning

Issue - State: closed - Opened by natir about 1 year ago
Labels: enhancement

#29 - Not support only human

Issue - State: closed - Opened by natir about 1 year ago
Labels: enhancement

#29 - Not support only human

Issue - State: closed - Opened by natir about 1 year ago
Labels: enhancement

#28 - PR follow version 0.2.0

Pull Request - State: closed - Opened by natir over 1 year ago

#28 - PR follow version 0.2.0

Pull Request - State: closed - Opened by natir over 1 year ago

#27 - Fix issue #25

Pull Request - State: closed - Opened by natir over 1 year ago

#27 - Fix issue #25

Pull Request - State: closed - Opened by natir over 1 year ago

#26 - Doc update

Pull Request - State: closed - Opened by SteampunkIslande over 1 year ago - 1 comment

#26 - Doc update

Pull Request - State: closed - Opened by SteampunkIslande over 1 year ago - 1 comment

#25 - Make check fails

Issue - State: closed - Opened by SteampunkIslande over 1 year ago - 1 comment

#25 - Make check fails

Issue - State: closed - Opened by SteampunkIslande over 1 year ago - 1 comment

#24 - perform variant id computation in rust

Pull Request - State: closed - Opened by natir over 1 year ago

#24 - perform variant id computation in rust

Pull Request - State: closed - Opened by natir over 1 year ago

#23 - Improve multiprocessing of variant merging

Pull Request - State: closed - Opened by natir over 1 year ago

#23 - Improve multiprocessing of variant merging

Pull Request - State: closed - Opened by natir over 1 year ago

#22 - Add support of json lines format in metadata json subcommand.

Pull Request - State: closed - Opened by natir over 1 year ago

#22 - Add support of json lines format in metadata json subcommand.

Pull Request - State: closed - Opened by natir over 1 year ago

#21 - Better cpu usage of genotype partitions

Pull Request - State: closed - Opened by natir over 1 year ago

#21 - Better cpu usage of genotype partitions

Pull Request - State: closed - Opened by natir over 1 year ago

#20 - Update README.md

Pull Request - State: closed - Opened by maxulysse over 1 year ago

#20 - Update README.md

Pull Request - State: closed - Opened by maxulysse over 1 year ago

#19 - Add benchmark graph in website.

Pull Request - State: closed - Opened by natir over 1 year ago

#19 - Add benchmark graph in website.

Pull Request - State: closed - Opened by natir over 1 year ago

#18 - Annotations subcommand should only accept one input file.

Pull Request - State: closed - Opened by natir over 1 year ago

#18 - Annotations subcommand should only accept one input file.

Pull Request - State: closed - Opened by natir over 1 year ago

#17 - Make difference between real denovo and just missing information

Pull Request - State: closed - Opened by natir over 1 year ago

#17 - Make difference between real denovo and just missing information

Pull Request - State: closed - Opened by natir over 1 year ago

#15 - Annotation subcommand can't accept multiple input.

Issue - State: closed - Opened by natir over 1 year ago

#15 - Annotation subcommand can't accept multiple input.

Issue - State: closed - Opened by natir over 1 year ago

#14 - Add benchmark

Pull Request - State: closed - Opened by natir over 1 year ago

#13 - Detect and manage SV variants to avoid potential legitimate colision.

Pull Request - State: closed - Opened by natir over 1 year ago - 1 comment

#12 - Error when no FORMAT/GQ field in VCF

Issue - State: closed - Opened by antonylebechec over 1 year ago - 2 comments

#11 - VCF in compress format (gz)

Issue - State: closed - Opened by antonylebechec over 1 year ago - 2 comments
Labels: wontfix

#10 - vcf2parquet subcommand can also store annotations in parquet

Pull Request - State: closed - Opened by natir over 1 year ago

#9 - Add annotations options for `vcf2parquet` subcommand

Issue - State: closed - Opened by natir over 1 year ago
Labels: enhancement

#8 - Support structural variant

Issue - State: closed - Opened by natir over 1 year ago - 1 comment
Labels: enhancement

#7 - Replace variant id by a guarantess uniqueness hash function

Issue - State: closed - Opened by natir over 1 year ago - 2 comments
Labels: enhancement

#6 - vcf2parquet can compute origin of variant

Pull Request - State: closed - Opened by natir over 1 year ago - 1 comment

#5 - feat(io.vcf): Add support of sample in io.vcf.from_lazyframe

Pull Request - State: closed - Opened by natir over 1 year ago

#4 - Merge variants and genotypes parquet

Issue - State: closed - Opened by natir over 1 year ago
Labels: enhancement

#3 - Add info description in `io.vcf.from_lazyframe`

Issue - State: open - Opened by natir over 1 year ago
Labels: enhancement

#2 - variantplaner.io.vcf.sample_index seems to be a dead code

Issue - State: closed - Opened by natir over 1 year ago

#1 - Todo List

Issue - State: closed - Opened by natir over 1 year ago
Labels: enhancement