Ecosyste.ms: Issues

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GitHub / nanoporetech/pod5-file-format issues and pull requests

#37 - Variable output pod5 subset

Issue - State: closed - Opened by Cuypers-Wim about 1 year ago - 10 comments
Labels: bug

#36 - No pod5 conda package

Issue - State: open - Opened by JannesSP about 1 year ago - 16 comments
Labels: enhancement

#34 - Error processing message when running pod5 convert fast5

Issue - State: closed - Opened by Flower9618 about 1 year ago - 10 comments
Labels: bug

#33 - Pod5 convert fast5 killed midway.

Issue - State: closed - Opened by caonetto about 1 year ago - 16 comments
Labels: bug

#32 - pod5 convert fast5 stuck at checking fast5 stage

Issue - State: closed - Opened by billytcl over 1 year ago - 8 comments
Labels: bug

#30 - pod5 merge error "too many open files"

Issue - State: closed - Opened by CWYuan08 over 1 year ago - 3 comments

#29 - pod5 convert fast5 hangs indefinitely at 100% done

Issue - State: closed - Opened by wilsonte-umich over 1 year ago - 3 comments
Labels: bug

#28 - broken pipe error when running pod5

Issue - State: closed - Opened by Flower9618 over 1 year ago - 4 comments
Labels: bug

#27 - Installation problems

Issue - State: closed - Opened by RenscoHogers over 1 year ago - 2 comments
Labels: documentation

#26 - guppy basecalling failing with a pod5 file

Issue - State: closed - Opened by igor-stevanovski over 1 year ago - 6 comments

#25 - how fast it is to convert from pod5 to fast5.

Issue - State: closed - Opened by Flower9618 over 1 year ago - 1 comment

#24 - better handling of corrupt files

Issue - State: closed - Opened by Kirk3gaard over 1 year ago - 2 comments
Labels: bug, enhancement

#23 - Installation error (no package 'arrow' found)

Issue - State: closed - Opened by asan-emirsaleh over 1 year ago - 7 comments

#22 - Guppy can't load pod5 files

Issue - State: closed - Opened by clock-matt over 1 year ago - 3 comments

#21 - pod5 inspect reads format to match the needs for pod5 subset

Issue - State: closed - Opened by Kirk3gaard over 1 year ago - 3 comments

#20 - Training a basecaller

Issue - State: closed - Opened by chrishendra93 over 1 year ago - 1 comment

#19 - Julia library for accessing POD5 data

Issue - State: closed - Opened by chofski over 1 year ago - 2 comments

#17 - No matching distribution found for lib-pod5~=0.1

Issue - State: closed - Opened by jdemeul over 1 year ago - 2 comments

#16 - Installation on macOS

Issue - State: closed - Opened by AngusNano over 1 year ago - 3 comments

#15 - About potential MinKNOW output

Issue - State: closed - Opened by hasindu2008 over 1 year ago - 2 comments

#14 - The writing speed of POD5

Issue - State: closed - Opened by hasindu2008 over 1 year ago - 10 comments

#13 - Maintain input folder hierarchy on conversion to/from fast5

Issue - State: closed - Opened by olawa over 1 year ago - 6 comments

#12 - object 'channel_id' doesn't exist

Issue - State: closed - Opened by damientully over 1 year ago - 2 comments

#11 - Stable access to read.reader.schema.metadata in the Python API

Issue - State: closed - Opened by tbooth almost 2 years ago - 7 comments

#10 - adding recursive option

Issue - State: closed - Opened by flokraft85 almost 2 years ago - 1 comment

#9 - Is pod5 a modification of slow5 ?

Issue - State: closed - Opened by markme123 about 2 years ago - 1 comment

#8 - error building from conan

Issue - State: closed - Opened by rdeborja about 2 years ago - 3 comments

#7 - pod5 to fast5?

Issue - State: closed - Opened by RichardCorbett about 2 years ago - 3 comments

#6 - adc_max/min=zero and adc_range missing, so can't calculate digitisation

Issue - State: closed - Opened by Psy-Fer about 2 years ago - 9 comments

#5 - Installation

Issue - State: closed - Opened by OZTaekOppa about 2 years ago - 9 comments

#4 - multiprocessing reads/batches

Issue - State: closed - Opened by Psy-Fer about 2 years ago - 4 comments

#3 - Understanding the signal_row count and the POD5 writing

Issue - State: closed - Opened by hasindu2008 about 2 years ago - 7 comments

#2 - POD5 streaming data functionality

Issue - State: closed - Opened by harisankarsadasivan about 2 years ago - 2 comments