Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nanoporetech/ont_fast5_api issues and pull requests
#84 - Unable to copy object (file read failed) on parallel FS
Issue -
State: open - Opened by matzmz 2 months ago
#83 - fast5_compress error:
Issue -
State: open - Opened by sahoo2000 6 months ago
#82 - compress_fast5 command
Issue -
State: open - Opened by senukobla 7 months ago
- 1 comment
#81 - single_to_multi_fast5 do not collect all the single files if the input folder contains mixed types of fast5 files.
Issue -
State: open - Opened by Marjan-Hosseini 7 months ago
#80 - Directly cast dataset into desired type instead of using it as a cont…
Pull Request -
State: open - Opened by nileshpatra 9 months ago
- 1 comment
#79 - similar API for pod5?
Issue -
State: open - Opened by assafgrw 10 months ago
- 2 comments
#78 - demux_fast5: `python3.9(20125,0x7ff84e0ee640) malloc: *** error for object 0x1110417b0: pointer being freed was not allocated`
Issue -
State: open - Opened by richardstoeckl 11 months ago
#77 - error when converting single read to multi read
Issue -
State: closed - Opened by Vsd1106 about 1 year ago
- 1 comment
#76 - demux_fast5 demultiplexing every single read by readID instead of barcode name
Issue -
State: closed - Opened by Violeta-de-Anca about 1 year ago
- 4 comments
#75 - fast5_subset to take list of .fast5 files
Issue -
State: closed - Opened by MustafaElshani over 1 year ago
- 1 comment
#74 - Some problem of multi_to_single_fast5
Issue -
State: closed - Opened by Bin-Ma over 1 year ago
- 6 comments
#73 - WARNING:Fast5Filter:xxx reads not found!
Issue -
State: open - Opened by markme123 almost 2 years ago
- 8 comments
#72 - the function get_latest_analysis fails after upgrading MinKNOW to version 21 and onward
Issue -
State: closed - Opened by avielmiluz about 2 years ago
- 6 comments
#71 - compress_fast5 not compressing?
Issue -
State: closed - Opened by mawa86 over 2 years ago
- 2 comments
#70 - The labels in the "end_reason" data type get lost when using compress_fast5
Issue -
State: closed - Opened by hasindu2008 over 2 years ago
- 7 comments
#69 - multi_to_single_fast5 problem
Issue -
State: closed - Opened by FerchoHQ over 2 years ago
- 3 comments
#68 - demultiplexing generates additional - folder
Issue -
State: closed - Opened by Fatihlrcfs over 2 years ago
- 3 comments
#67 - subset obtained with fast5_subset does not work for guppy
Issue -
State: closed - Opened by ndierckx over 2 years ago
- 3 comments
#66 - demux_fast5 resume list
Issue -
State: open - Opened by SkabbiVML over 2 years ago
- 1 comment
#65 - multi_to_multi_fast5
Issue -
State: open - Opened by nick-youngblut over 2 years ago
- 2 comments
#64 - vbz compression compatibility with guppy_basecaller
Issue -
State: closed - Opened by nick-youngblut over 2 years ago
- 2 comments
#63 - Multi to single fast5 goes into sleep
Issue -
State: closed - Opened by kaltinel over 2 years ago
- 7 comments
#62 - fast5_subset OSError
Issue -
State: closed - Opened by ndierckx over 2 years ago
- 4 comments
#61 - Issues attempting to duplicate reads
Issue -
State: closed - Opened by CodingKaiser over 2 years ago
- 8 comments
#60 - 'demux_fast5' (and 'fast5_subset') for single read fast5s
Issue -
State: closed - Opened by AAnnan almost 3 years ago
- 5 comments
#59 - --filename_base behaves differently in 'fast5_subset'
Issue -
State: open - Opened by AAnnan almost 3 years ago
- 2 comments
#58 - --sanitize can't be used with --in_place with compress_fast5
Issue -
State: closed - Opened by mattloose almost 3 years ago
- 2 comments
#57 - ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Unable to open file
Issue -
State: closed - Opened by 123chenshixin almost 3 years ago
- 1 comment
#56 - filesize increased reconverting vbz compressed fast5 back to gzip compression
Issue -
State: closed - Opened by biolene about 3 years ago
- 13 comments
#55 - multi_to_single_fast5 generated only 4000 single fast5
Issue -
State: closed - Opened by Johnsonzcode about 3 years ago
- 13 comments
#54 - Guppy default modified base calling configuration file doesn't exist
Issue -
State: closed - Opened by JayVaz18 about 3 years ago
- 1 comment
#52 - mounting error
Issue -
State: closed - Opened by xj-Liang-Olga about 3 years ago
- 2 comments
#51 - fast5_subset failing mid-run
Issue -
State: closed - Opened by irenenewton over 3 years ago
- 6 comments
#50 - fast5_subset is missing?
Issue -
State: closed - Opened by kaykay202 over 3 years ago
- 1 comment
#49 - [M]: add tombo resquiggle
Pull Request -
State: closed - Opened by loganylchen over 3 years ago
- 5 comments
#48 - Update LICENSE.txt URL schemes: http -> https
Pull Request -
State: closed - Opened by thequicksort over 3 years ago
- 1 comment
#47 - Metadata from multifast5
Issue -
State: open - Opened by usamec over 3 years ago
- 1 comment
#46 - Error when running compress_fast5 but seems to complete
Issue -
State: closed - Opened by callumparr over 3 years ago
- 3 comments
#45 - Question: subset by barcode
Issue -
State: closed - Opened by JWDebler over 3 years ago
- 10 comments
#44 - Decompression
Issue -
State: closed - Opened by jamez-eh almost 4 years ago
- 10 comments
#43 - multi_to_single_fast5 hanging
Issue -
State: closed - Opened by fbrennen almost 4 years ago
- 1 comment
#42 - no space left on device [errno28]
Issue -
State: closed - Opened by cyber-ux almost 4 years ago
- 9 comments
#41 - multi_to_single_fast5 command give syntax error
Issue -
State: closed - Opened by aman21392 about 4 years ago
- 5 comments
#40 - ERROR:ont_fast5_api.conversion_tools.multi_to_single_fast5:Could not convert Multi->Single for file type 'single-read' with path
Issue -
State: open - Opened by akk01 about 4 years ago
- 4 comments
#39 - Check if the Fast5 is multi-read or single-read
Issue -
State: closed - Opened by akk01 about 4 years ago
- 1 comment
#38 - single_to_multi_fast5 compression is not working ?
Issue -
State: closed - Opened by svennd about 4 years ago
- 5 comments
#37 - How to get info from fast5?
Issue -
State: closed - Opened by renzilin about 4 years ago
- 2 comments
Labels: question
#36 - Can I subsample Nanopore fast5/fastq with this tool?
Issue -
State: closed - Opened by jolespin about 4 years ago
- 7 comments
#35 - sequencing_summary.txt for fast5_subset output
Issue -
State: closed - Opened by mmiladi about 4 years ago
- 4 comments
#34 - Decompress/repack from VBZ to GZIP or something option compatible with squiggle tools
Issue -
State: closed - Opened by callumparr about 4 years ago
- 6 comments
#33 - fast5_subset on vbz compressed fast5 files
Issue -
State: closed - Opened by Ganthark over 4 years ago
- 4 comments
#32 - Type incompatibility in Fast5Info constructor
Issue -
State: closed - Opened by lfearnley over 4 years ago
- 4 comments
#31 - read_id does not exists in single fast5 reads
Issue -
State: closed - Opened by usamec over 4 years ago
- 2 comments
#30 - different filesize after "de-" compression
Issue -
State: closed - Opened by svennd over 4 years ago
- 3 comments
#29 - Add compression option in single_to_multi_fast5.py
Issue -
State: closed - Opened by cgjosephlee over 4 years ago
- 1 comment
#28 - --recursive in compress_fast5
Issue -
State: closed - Opened by pterzian over 4 years ago
- 2 comments
#27 - [bug report] single_to_multi_fast5 fail
Issue -
State: closed - Opened by yipukangda over 4 years ago
- 5 comments
#26 - "for for" in documentation
Issue -
State: closed - Opened by Shians over 4 years ago
- 2 comments
#25 - Following symlinks recursively
Issue -
State: closed - Opened by wdecoster almost 5 years ago
- 3 comments
#24 - fast5_subset take fastq as readID list
Issue -
State: open - Opened by Kirk3gaard almost 5 years ago
- 1 comment
#23 - '<' not supported between instances of 'str' and 'float'
Issue -
State: closed - Opened by imet-k almost 5 years ago
- 8 comments
#22 - Issue while converting single_to_multi_fast5
Issue -
State: closed - Opened by andrese52 almost 5 years ago
- 1 comment
#21 - ValueError: mpi4py.MPI.Status size changed, may indicate binary incompatibility.
Issue -
State: closed - Opened by fbrennen almost 5 years ago
- 3 comments
#20 - multi_to_single_fast5 outputted single fast5 files without content for Albacore base-calling
Issue -
State: closed - Opened by EPKok almost 5 years ago
- 1 comment
#19 - Write reads to a multi fast5?
Issue -
State: closed - Opened by mrvollger almost 5 years ago
- 7 comments
#18 - add option skip_analyses to remove fastq data during conversion
Pull Request -
State: closed - Opened by tolot27 almost 5 years ago
- 1 comment
#17 - fail to run fast5_subset
Issue -
State: closed - Opened by limin321 about 5 years ago
- 6 comments
#16 - multi_fast5_subset doesn't recognise the number of threads
Issue -
State: closed - Opened by mattloose about 5 years ago
- 6 comments
#15 - Select only subset of reads from multi_fast5
Pull Request -
State: closed - Opened by lpryszcz about 5 years ago
- 4 comments
#14 - multi_to_single_fast5 no output
Issue -
State: closed - Opened by Shians about 5 years ago
- 3 comments
#13 - multi_to_single_fast5 fails with no error
Issue -
State: closed - Opened by pabloacera about 5 years ago
- 4 comments
#12 - multi_to_single_fast5 stops converting after the first two files
Issue -
State: closed - Opened by kychen37 about 5 years ago
- 3 comments
#11 - `multi_to_single_fast5 ` producing a `file signature not found` error
Issue -
State: closed - Opened by shaniAmare about 5 years ago
- 3 comments
#10 - Unable to cobvert multi_to_single_fast5
Issue -
State: closed - Opened by icedevil2001 over 5 years ago
- 6 comments
#9 - AttributeError: 'ProgressBar' object has no attribute 'currval'
Issue -
State: closed - Opened by hygine over 5 years ago
- 7 comments
#8 - filename_mapping.txt gets overwritten
Issue -
State: closed - Opened by mbhall88 over 5 years ago
- 4 comments
#7 - albacore errors after multi_to_single_fast5.py
Issue -
State: closed - Opened by lcoombe over 5 years ago
- 20 comments
#6 - problem with duplicate name
Issue -
State: closed - Opened by lfaino over 5 years ago
- 1 comment
#5 - `--recursive` option do not search into symbolic links
Issue -
State: closed - Opened by cgjosephlee over 5 years ago
- 4 comments
#4 - Show a correct error message on file opening failure
Pull Request -
State: closed - Opened by hyeshik over 5 years ago
- 2 comments
#3 - Update for compatibility with multi file fast5s
Issue -
State: closed - Opened by mattloose over 5 years ago
- 4 comments
#2 - feature request : add tar as input format for single_to_multi_fast5
Issue -
State: closed - Opened by svennd over 5 years ago
- 3 comments
#1 - fast5 validator
Issue -
State: closed - Opened by mattloose almost 6 years ago
- 3 comments