namphuon/ViFi issues and pull requests

#30 - Running ViFi with Custom Reference Files

Issue - State: open - Opened by doeun99 over 1 year ago

#29 - What is the source of prebuilt hbv hmm model

Issue - State: closed - Opened by polojacky about 3 years ago - 1 comment

#28 - 404 not found for google driver link

Issue - State: closed - Opened by zhang616123 over 3 years ago - 2 comments

#27 - Incorrect link of Step4

Issue - State: open - Opened by WenjinGudaisy over 3 years ago - 1 comment

#26 - IOError: [Errno 2] No such file or directory: 'tmp/temp/hmmsearch.0'

Issue - State: closed - Opened by zjfzq91 about 4 years ago

#25 - Erros when running with other references

Issue - State: open - Opened by szsctt about 4 years ago - 1 comment

#24 - Fix a typo in README

Pull Request - State: closed - Opened by kojix2 over 4 years ago

#23 - Problems with --disable_hmms

Issue - State: open - Opened by stsergbg over 5 years ago - 6 comments

#22 - Problems with understanding output.clusters.txt and *.range files

Issue - State: closed - Opened by stsergbg over 5 years ago - 1 comment

#21 - Please version release ViFi

Issue - State: open - Opened by evanbiederstedt over 5 years ago

#20 - I got an error: File "/data/program/ViFi/ViFi/scripts/run_vifi.py", line 118, in <module> reference_dir = os.environ['REFERENCE_REPO'] File "/usr/lib/python2.7/UserDict.py", line 40, in getitem raise KeyError(key) KeyError: 'REFERENCE_REPO'

Issue - State: open - Opened by byeonggill over 5 years ago - 1 comment

#19 - EBV support

Issue - State: closed - Opened by annahyan over 5 years ago - 1 comment

#18 - breakpoint position left shift and large mem required

Issue - State: open - Opened by hujingchu over 5 years ago - 1 comment

#17 - fix samtools reheader which only accept un-compressed sam files as header

Pull Request - State: open - Opened by hujingchu over 5 years ago

#16 - ViFi For germline

Issue - State: closed - Opened by Jordi-V almost 6 years ago - 3 comments

#15 - Would ViFi remove duplicate reads?

Issue - State: closed - Opened by ouzhihua almost 6 years ago - 1 comment

#14 - can convert bam version speed up

Issue - State: open - Opened by worker000000 about 6 years ago

#13 - ViFi can be used for non-human genome and virus??

Issue - State: closed - Opened by ssri28 about 6 years ago - 1 comment

#12 - AttributeError: 'NoneType' object has no attribute 'write'

Issue - State: closed - Opened by ouzhihua about 6 years ago - 2 comments

#11 - No chimeric results generated from the test data

Issue - State: closed - Opened by ouzhihua about 6 years ago - 9 comments

#10 - Failed to open file output.bam

Issue - State: open - Opened by yuanqm55 about 6 years ago - 8 comments

#9 - AlignmentHeader does not support item assignment

Issue - State: closed - Opened by Anuragksingh over 6 years ago - 4 comments

#8 - Fixed miscFile is None error

Pull Request - State: open - Opened by ddemaeyer over 6 years ago - 1 comment

#7 - miscFile.write(b) is None

Pull Request - State: closed - Opened by ddemaeyer over 6 years ago

#6 - Error; hg19util

Issue - State: closed - Opened by Anuragksingh over 6 years ago - 1 comment

#5 - hg19util.py

Issue - State: closed - Opened by maflister over 6 years ago

#4 - reduced.csv not being created

Issue - State: closed - Opened by dnygard over 6 years ago - 1 comment

#3 - Inquiry

Issue - State: closed - Opened by breez1 over 6 years ago - 3 comments

#2 - Change output to use position of most representative strain in cluster

Issue - State: open - Opened by namphuon over 6 years ago
Labels: enhancement

#1 - hg19util module not found