nadeemlab/DeepLIIF issues and pull requests

#47 - Pretrained Model Weights - Version Clarification

Issue - State: closed - Opened by amandamariedy 17 days ago - 1 comment

#46 - Project reproduction question

Issue - State: open - Opened by ZhouChen-start about 1 month ago - 1 comment

#45 - Having trouble accessing DeepLIIF by Using API

Issue - State: closed - Opened by Stella-123-spu about 2 months ago - 5 comments

#44 - Bump commons-io:commons-io from 2.11.0 to 2.14.0 in /ImageJ_Plugin

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, java

#43 - Bump opencv-python from 4.5.3.56 to 4.8.1.78

Pull Request - State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies, python

#42 - Updated Model Training

Pull Request - State: open - Opened by wendywangwwt 3 months ago - 1 comment

#41 - Inference is extremely slow

Issue - State: closed - Opened by jackhanyuan 4 months ago - 2 comments

#40 - Bad Segmentation for IHC Images with cytoplasm staining

Issue - State: closed - Opened by pouya-codes 5 months ago - 1 comment

#39 - Select evaluation metrics for generated IHC images from H&E images

Issue - State: closed - Opened by linhduongtuan 5 months ago - 4 comments

#38 - Using only immunofluoresnce images without HE staining

Issue - State: closed - Opened by KarlKaise 10 months ago - 2 comments

#37 - Synthetic Data Generation (SDG) Model & Minor Updates

Pull Request - State: closed - Opened by wendywangwwt 10 months ago

#36 - Inconsistency Between Cloud Deployment and API Call Results

Issue - State: closed - Opened by HaozhongMa 11 months ago - 6 comments

#35 - Improved Compatibility of DeepLIIFExt & Reduced GPU Usage for Eager Mode Inference

Pull Request - State: closed - Opened by wendywangwwt 12 months ago - 6 comments

#34 - Bump org.json:json from 20211205 to 20231013 in /ImageJ_Plugin

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#33 - pre-training model

Issue - State: closed - Opened by Lazy5233 about 1 year ago - 1 comment

#32 - error when trying to run this line: docker run -it -v `pwd`:`pwd` -w `pwd` cuda/deepliif deepliif test --input-dir Sample_Large_Tissues

Issue - State: closed - Opened by najahc about 1 year ago - 13 comments

#31 - can't make it on open platform:https://deepliif.org/

Issue - State: closed - Opened by xliuPhd about 1 year ago - 2 comments

#30 - Standardized model initialization, new DeepLIIFExt model class, testing framework setup

Pull Request - State: closed - Opened by wendywangwwt over 1 year ago - 10 comments

#29 - Initialize model using DeepLIIFModel class in inference & Testing framework setup

Pull Request - State: closed - Opened by wendywangwwt over 1 year ago - 4 comments

#28 - How can I obtain the coordinates of seg?

Issue - State: closed - Opened by wzzwh110 over 1 year ago

#27 - Dataset Links Request

Issue - State: closed - Opened by Salmck over 1 year ago - 1 comment

#26 - Bad Segmentation with Large IHC Images

Issue - State: closed - Opened by Salmck over 1 year ago - 4 comments

#25 - Improved Training Opts Loading in test.py and Stable Inference

Pull Request - State: closed - Opened by wendywangwwt over 1 year ago - 7 comments

#24 - Stabilize Inference Results

Pull Request - State: closed - Opened by wendywangwwt almost 2 years ago - 4 comments

#23 - Merge main into extension + minor fixes

Pull Request - State: closed - Opened by wendywangwwt about 2 years ago - 1 comment

#22 - replaced \r\n with \n

Pull Request - State: closed - Opened by wendywangwwt about 2 years ago - 1 comment

#21 - Could you provide the code about generating the pseudo ground truth density map on BCData?

Issue - State: closed - Opened by windygoo about 2 years ago - 1 comment

#20 - how to change Segmentation Threshold, size gating and marker threshold in the local CLI version

Issue - State: closed - Opened by WeiLiuY about 2 years ago - 1 comment

#19 - how to calculate Percentage of IHC+ cell in WSI

Issue - State: closed - Opened by WeiLiuY about 2 years ago - 1 comment

#18 - Possible function name change

Issue - State: closed - Opened by jimmymathews over 2 years ago

#17 - Could you provide the code about calculating precision, recall and f1-score on the cell detection task?

Issue - State: closed - Opened by AOTY-szy over 2 years ago - 1 comment

#16 - Fix two errors in Dockerfile

Pull Request - State: closed - Opened by desaixie over 2 years ago

#15 - DeepLIIF dataset

Issue - State: closed - Opened by AndrewTal over 2 years ago - 2 comments

#14 - Fix cli visualize command issues

Pull Request - State: closed - Opened by wendywwang over 2 years ago

#13 - [WIP] Mkdocs documentation

Pull Request - State: closed - Opened by ricdodds almost 3 years ago
Labels: documentation

#12 - Rebased: little fixes, extensions to visualizer, ddp, deterministic training

Pull Request - State: closed - Opened by wendywwang almost 3 years ago - 1 comment

#11 - Wmla deployment

Pull Request - State: closed - Opened by drewmibm almost 3 years ago - 1 comment

#10 - little fixes, extensions to visualizer, ddp, deterministic training

Pull Request - State: closed - Opened by wendywwang almost 3 years ago - 21 comments

#9 - deepliif CLI and inference on multiple GPUs using Dask

Pull Request - State: closed - Opened by ricdodds almost 3 years ago - 2 comments