Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / myles-lewis/glmmSeq issues and pull requests

#39 - Application for metagenomics data ???

Issue - State: open - Opened by OrsonMM 3 months ago

#37 - Output summary

Issue - State: open - Opened by CarrieMeeks 8 months ago

#36 - do I need to add age into the model?

Issue - State: closed - Opened by ChuanJ 9 months ago - 2 comments

#34 - Dispersion memory issue

Issue - State: closed - Opened by JHYSiu about 1 year ago

#33 - Update fcPlot.R

Pull Request - State: open - Opened by elisabettasciacca over 1 year ago

#32 - GSEA Support

Issue - State: open - Opened by nijibabulu over 1 year ago

#31 - vector memory exhausted issue

Issue - State: open - Opened by leqi0001 almost 2 years ago - 1 comment

#30 - Can glmmseq be used in non-longitudinal data?

Issue - State: closed - Opened by Leran10 almost 2 years ago - 1 comment

#29 - Add LRT option

Pull Request - State: closed - Opened by myles-lewis about 2 years ago

#28 - Update documentation

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#27 - Add glmmTMB

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#26 - Speed up lmmSeq

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#25 - Improve stats output

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#24 - sizeFactors instructions in vignette

Issue - State: closed - Opened by zktuong over 2 years ago - 1 comment

#23 - Fast lmer wald test

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#22 - lmmSeq

Pull Request - State: closed - Opened by myles-lewis over 2 years ago

#21 - Add '...' to fcPlot

Issue - State: closed - Opened by elisabettasciacca over 2 years ago - 1 comment

#20 - Using TPM normalised vs raw count expression data

Issue - State: closed - Opened by RikLindeboom over 2 years ago - 1 comment

#19 - About turing off annotationPosition

Issue - State: closed - Opened by elisabettasciacca over 2 years ago - 2 comments

#18 - pairedPlot error using GlmmSeq object with covariates

Issue - State: closed - Opened by kew24 almost 3 years ago - 4 comments

#17 - Specify design matrix

Pull Request - State: closed - Opened by zktuong almost 3 years ago - 1 comment

#16 - inverting log2 subtraction for FCplot

Pull Request - State: closed - Opened by elisabettasciacca almost 3 years ago

#15 - Adjust ylim when plotting the model

Pull Request - State: closed - Opened by elisabettasciacca over 3 years ago

#14 - Allow users to input their own family in lme4::glmer()

Issue - State: closed - Opened by KatrionaGoldmann over 3 years ago - 3 comments
Labels: enhancement

#13 - plotCutoff parameter in fcPlot

Issue - State: closed - Opened by elisabettasciacca over 3 years ago - 1 comment

#12 - colors in base plot

Issue - State: closed - Opened by elisabettasciacca over 3 years ago - 1 comment

#11 - Eli 2

Pull Request - State: closed - Opened by elisabettasciacca over 3 years ago - 1 comment

#10 - Update pairedPlots.R

Pull Request - State: closed - Opened by elisabettasciacca over 3 years ago - 1 comment

#9 - fontSize option does not work

Issue - State: closed - Opened by elisabettasciacca over 3 years ago - 1 comment

#8 - mention size factors in the vignette

Issue - State: closed - Opened by elisabettasciacca over 3 years ago - 3 comments

#7 - Add progress bar

Issue - State: closed - Opened by KatrionaGoldmann over 3 years ago - 1 comment
Labels: enhancement

#6 - Update glmmSeq.R

Pull Request - State: closed - Opened by elisabettasciacca almost 4 years ago

#4 - Create modelPlot function

Issue - State: closed - Opened by KatrionaGoldmann over 4 years ago - 1 comment
Labels: enhancement

#3 - Create glmmGene function to run model on one gene alone and return fit

Issue - State: closed - Opened by KatrionaGoldmann over 4 years ago
Labels: enhancement

#1 - add a glmmSeq function which doesnt use glmer but glm (without the random effects)

Issue - State: closed - Opened by KatrionaGoldmann over 4 years ago - 1 comment
Labels: enhancement