mwang87/metabolomicsspectrumresolver issues and pull requests

#88 - New style USIs

Pull Request - State: closed - Opened by bittremieux over 4 years ago - 7 comments

#87 - Select default peak annotations in peak table

Pull Request - State: closed - Opened by bittremieux over 4 years ago - 2 comments

#86 - [Rendering] Enable Default Selection for Peak Annotation

Issue - State: closed - Opened by mwang87 over 4 years ago
Labels: enhancement

#85 - [Privacy] GDPR Notices

Issue - State: closed - Opened by mwang87 over 4 years ago

#84 - adding template data privacy

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#83 - SPLASH integration

Pull Request - State: closed - Opened by mwang87 almost 5 years ago - 1 comment

#82 - [New feature] ms2 tolerance configurable for mirror

Issue - State: closed - Opened by sdrogers almost 5 years ago - 2 comments

#81 - Labels when max intensity is set

Issue - State: closed - Opened by sdrogers almost 5 years ago - 1 comment

#80 - [New feature] Ppm errors

Issue - State: open - Opened by sdrogers almost 5 years ago - 2 comments
Labels: enhancement

#79 - Better cosine score + annotate custom peaks

Pull Request - State: closed - Opened by bittremieux almost 5 years ago - 9 comments

#78 - Is cosine similarity working correctly?

Issue - State: closed - Opened by sdrogers almost 5 years ago - 1 comment

#77 - Showing the precursor ion mass somewhere on the header/figure

Issue - State: closed - Opened by lfnothias almost 5 years ago - 1 comment

#76 - Bug fragment ions not labeled

Issue - State: closed - Opened by lfnothias almost 5 years ago - 2 comments

#75 - adding proxi interface

Pull Request - State: closed - Opened by mwang87 almost 5 years ago - 2 comments

#74 - Adding workbench support and more examples

Pull Request - State: closed - Opened by mwang87 almost 5 years ago

#73 - [MS2LDA] Change in permissions

Issue - State: closed - Opened by mwang87 almost 5 years ago - 2 comments

#72 - [Bug] Parsing and Viz

Issue - State: closed - Opened by mwang87 almost 5 years ago

#71 - [Bugs] Ming Broke Things, he is fixing!

Issue - State: closed - Opened by mwang87 about 5 years ago

#70 - adding tests fix

Pull Request - State: closed - Opened by mwang87 about 5 years ago

#69 - Mirror plot cosine similarity

Pull Request - State: closed - Opened by bittremieux about 5 years ago

#68 - We lost rescaling...

Issue - State: closed - Opened by sdrogers about 5 years ago - 1 comment
Labels: enhancement

#67 - [Documentation] mzspec vs. mzdata

Issue - State: closed - Opened by sneumann about 5 years ago - 1 comment

#66 - [New Feature] Link from SPLASH

Issue - State: closed - Opened by sneumann about 5 years ago - 6 comments

#65 - [Mirror Plot] Embed spectral similarity score calculation

Issue - State: closed - Opened by mwang87 about 5 years ago - 6 comments

#64 - [API] Update JSON API to conform to PROXI API

Issue - State: closed - Opened by mwang87 about 5 years ago

#63 - [Linking] Linking from GNPS Library Page

Issue - State: closed - Opened by mwang87 about 5 years ago

#62 - [Linking] Linking from MassBank

Issue - State: closed - Opened by mwang87 about 5 years ago - 8 comments

#61 - [Linking] Links from MS2LDA.org

Issue - State: closed - Opened by mwang87 about 5 years ago - 1 comment

#60 - [New Feature] MS1 Support

Issue - State: closed - Opened by mwang87 about 5 years ago - 1 comment

#59 - Integration Tests

Pull Request - State: closed - Opened by mwang87 about 5 years ago

#58 - 500 error page

Pull Request - State: closed - Opened by mwang87 about 5 years ago

#57 - Don't plot outside of the max and min mz for labels

Pull Request - State: closed - Opened by mwang87 about 5 years ago - 1 comment

#56 - [BUG] When updating max mz range, the peak labels still show

Issue - State: closed - Opened by mwang87 about 5 years ago

#55 - Extended title

Pull Request - State: closed - Opened by bittremieux about 5 years ago

#54 - Color bottom spectrum in a mirror plot

Pull Request - State: closed - Opened by bittremieux about 5 years ago

#53 - Fix form bug

Pull Request - State: closed - Opened by bittremieux about 5 years ago

#52 - [WIP] fix for install

Pull Request - State: closed - Opened by mwang87 about 5 years ago

#51 - [WIP] Changes

Pull Request - State: closed - Opened by bittremieux about 5 years ago - 1 comment

#50 - [WIP] Adding Real Linkbacks

Pull Request - State: closed - Opened by mwang87 about 5 years ago

#49 - [BUG] Memory Leak

Issue - State: closed - Opened by mwang87 about 5 years ago - 4 comments
Labels: bug

#48 - Allow user to submit input with Enter/Return

Issue - State: closed - Opened by chen-chris-topher about 5 years ago

#47 - Error checking

Issue - State: closed - Opened by sdrogers about 5 years ago - 2 comments

#46 - Refactoring

Pull Request - State: closed - Opened by bittremieux about 5 years ago - 1 comment

#45 - MTBLS / Metabolomics Workbench parsing correct?

Issue - State: closed - Opened by bittremieux about 5 years ago - 2 comments

#44 - Added line for link back to source library

Pull Request - State: closed - Opened by chen-chris-topher about 5 years ago

#43 - contributors page improvement

Pull Request - State: closed - Opened by chen-chris-topher about 5 years ago - 1 comment

#42 - Errors number 2...

Issue - State: closed - Opened by sdrogers about 5 years ago - 4 comments

#41 - Error handling

Pull Request - State: closed - Opened by sdrogers about 5 years ago

#40 - Csv fix

Pull Request - State: closed - Opened by sdrogers about 5 years ago

#39 - adding access logs to production system

Pull Request - State: closed - Opened by mwang87 about 5 years ago - 1 comment

#38 - Add Logging output

Issue - State: closed - Opened by mwang87 about 5 years ago

#37 - Add heading to csv

Issue - State: closed - Opened by sdrogers about 5 years ago - 1 comment

#36 - Add Structure to Plot

Issue - State: open - Opened by mwang87 about 5 years ago - 3 comments
Labels: enhancement

#35 - Merge USI and QR into one plot

Issue - State: closed - Opened by mwang87 about 5 years ago - 1 comment

#34 - Title URL Link in SVG

Issue - State: closed - Opened by mwang87 about 5 years ago

#33 - Different colours for top and bottom of mirror

Issue - State: closed - Opened by sdrogers over 5 years ago

#32 - Dockerfile update

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#31 - Error messages!

Issue - State: closed - Opened by sdrogers over 5 years ago - 7 comments

#30 - Label decimal place parameter

Pull Request - State: closed - Opened by sdrogers over 5 years ago - 1 comment

#29 - Autodetect mz accuracy

Issue - State: closed - Opened by sdrogers over 5 years ago - 1 comment

#28 - Different colour for precursor mz

Issue - State: closed - Opened by sdrogers over 5 years ago - 2 comments

#27 - Plot precursor

Pull Request - State: closed - Opened by sdrogers over 5 years ago

#26 - Tools should return precursor_mz

Issue - State: closed - Opened by sdrogers over 5 years ago - 4 comments

#25 - Spectral alignment

Issue - State: closed - Opened by sdrogers over 5 years ago

#24 - Improve mirror plot

Pull Request - State: closed - Opened by bittremieux over 5 years ago - 1 comment

#23 - Contributors Page

Issue - State: closed - Opened by mwang87 over 5 years ago

#22 - adding a passthrough for rotation for mass label

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#21 - Mirror integration

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#20 - pull latest changes

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#19 - Pulling latest to mirror branch

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#18 - HMDB?

Issue - State: open - Opened by sdrogers over 5 years ago - 4 comments
Labels: enhancement

#17 - Use spectrum_utils for simplified figure generation

Pull Request - State: closed - Opened by bittremieux over 5 years ago - 3 comments

#16 - Peak Annotation

Issue - State: open - Opened by mwang87 over 5 years ago - 4 comments
Labels: enhancement

#15 - [Refactor] Push burden of mass window, rescaling, and peak annotation to spectrum_utils

Issue - State: closed - Opened by mwang87 over 5 years ago

#14 - Linking back to the source library page

Issue - State: closed - Opened by lfnothias over 5 years ago - 4 comments

#13 - [WIP] creating new mirror page

Pull Request - State: closed - Opened by mwang87 over 5 years ago

#12 - Mirror plots of spectral library matches

Issue - State: closed - Opened by mwang87 over 5 years ago - 4 comments

#11 - Potential: coloring labeled peaks so its clear what we're pointing to

Issue - State: closed - Opened by mwang87 over 5 years ago - 2 comments

#10 - Logo/favico

Issue - State: closed - Opened by mwang87 over 5 years ago

#9 - SVG Drawing Options Interface

Issue - State: closed - Opened by mwang87 over 5 years ago - 8 comments
Labels: enhancement

#8 - Fragment mass update

Issue - State: closed - Opened by mwang87 over 5 years ago - 1 comment

#7 - Massbank Integration

Issue - State: closed - Opened by mwang87 over 5 years ago - 2 comments

#6 - Adding a download button for the SVG

Issue - State: closed - Opened by lfnothias over 5 years ago - 2 comments
Labels: enhancement

#5 - Adding a title for the spectrum

Issue - State: closed - Opened by lfnothias over 5 years ago - 5 comments

#4 - Improving the fragment m/z value display

Issue - State: closed - Opened by lfnothias over 5 years ago - 5 comments

#3 - Visualization Enhancement

Issue - State: closed - Opened by alan-jarmusch over 5 years ago - 13 comments

#2 - SVG labels and rescaling

Issue - State: closed - Opened by sdrogers over 5 years ago

#1 - [Examples] Add examples and list out support on homepage

Issue - State: closed - Opened by mwang87 over 5 years ago - 3 comments
Labels: enhancement

GitHub / mwang87/metabolomicsspectrumresolver issues and pull requests