Ecosyste.ms: Issues

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GitHub / mwang87/MassQueryLanguage issues and pull requests

#247 - Dependency slimming

Pull Request - State: open - Opened by mwang87 4 months ago

#246 - Multiple repeats syntax

Pull Request - State: open - Opened by mwang87 7 months ago

#245 - `"pepmass"` KeyError with `matchms` versions >0.22

Issue - State: open - Opened by ometa-evan 7 months ago

#243 - Update test_queries.txt

Pull Request - State: open - Opened by albertogilf about 1 year ago - 1 comment

#242 - bug fix to make sure when symlinks its also ok

Pull Request - State: closed - Opened by mwang87 over 1 year ago

#241 - fixing commandline

Pull Request - State: closed - Opened by mwang87 over 1 year ago

#240 - Enabling Better Caching

Pull Request - State: closed - Opened by mwang87 over 1 year ago

#239 - Multiple scan queries

Pull Request - State: closed - Opened by mwang87 over 1 year ago

#238 - How to query Thermo AIF MS2 data?

Issue - State: open - Opened by yguitton over 1 year ago - 1 comment

#237 - actually adding query field

Pull Request - State: closed - Opened by mwang87 almost 2 years ago

#236 - Even and Odd functions for peaks in a spectrum

Issue - State: open - Opened by mwang87 almost 2 years ago

#235 - feature request: conda package for massql

Issue - State: open - Opened by timosachsenberg almost 2 years ago - 4 comments

#234 - Working to convert to gnps2 workflow

Pull Request - State: closed - Opened by mwang87 almost 2 years ago

#233 - bump version

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#232 - Removing Ray Dependencies

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#231 - Adding Another Lanuage

Pull Request - State: closed - Opened by mwang87 about 2 years ago - 1 comment

#230 - Fixes for merging

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#229 - Update msql_translator.py

Pull Request - State: closed - Opened by Adafede about 2 years ago - 3 comments

#228 - Update msql_translator.py

Pull Request - State: closed - Opened by Adafede about 2 years ago

#227 - Update README.md

Pull Request - State: closed - Opened by Adafede about 2 years ago

#226 - Copy dataframe when applying intensity match

Pull Request - State: closed - Opened by JohnsonDylan about 2 years ago - 2 comments

#224 - [Dash] Make a search button for query updates

Issue - State: open - Opened by mwang87 over 2 years ago

#223 - [Testing] Make sure dashboard lists all the files for testing

Issue - State: closed - Opened by mwang87 over 2 years ago

#222 - [Documentation] Link to GNPS Conversion documentation

Issue - State: closed - Opened by mwang87 over 2 years ago

#221 - adding more testing for cardinality

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#219 - [Compendium] Refactor for compendium

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#218 - [Translation] Making translations more complete

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#217 - Update to make Japanese more natural

Pull Request - State: closed - Opened by kozo2 over 2 years ago - 1 comment

#216 - Adding Japanese Translation

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#215 - Add language == "japanese"

Pull Request - State: closed - Opened by kozo2 over 2 years ago

#214 - User Settable Max File Size in Workflow

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#213 - MS1 precursor ion/s with 34S isotope pattern

Issue - State: open - Opened by Mattesimone over 2 years ago - 3 comments

#212 - [Bug FIx] Fixing Extractions for UV spectra

Pull Request - State: open - Opened by mwang87 over 2 years ago

#211 - Cleaning up Release Drafter

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#210 - Tea Examples - Address UV spectra in mzML

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#209 - Add test setup info to README and minore .gitignore update

Pull Request - State: closed - Opened by dvryaboy over 2 years ago - 1 comment

#208 - Tolerating Failures on Cluster

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#207 - [Testing] Fixing testing - scan numbers are integers

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#206 - [Bug Fix] MassQL MGF Scan number types

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#205 - [Bug] Query does not seem to respect INTENSITYVALUE

Issue - State: closed - Opened by mwang87 almost 3 years ago - 1 comment

#204 - Bug Fix - If output filename for results is too long, force it shorter

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#202 - MassQL File Loading Extraction Fix

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#200 - Using latest version of lark

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#199 - [Cleanup] Debug setup for Lark 1.0

Issue - State: open - Opened by mwang87 almost 3 years ago

#198 - [Grammar] Cardinality support for OR operations

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#197 - [Language] Enable cardinality filtering for scan queries

Issue - State: closed - Opened by mwang87 almost 3 years ago - 2 comments

#196 - [Dashboard] Show the full compound name on hover

Issue - State: open - Opened by mwang87 almost 3 years ago

#195 - Exporting original filename

Pull Request - State: closed - Opened by mwang87 almost 3 years ago

#194 - Fixing Russian Translation

Pull Request - State: closed - Opened by sarvarkaxxorov about 3 years ago

#192 - [Versions] Pin versions of requirements.txt

Issue - State: open - Opened by mwang87 about 3 years ago

#191 - [Language Feature] Adding support for scan intensity max

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#190 - [Bug Fix] Updating the extraction when there are UV spectra

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#189 - Support scanmaxintensity function

Issue - State: closed - Opened by mwang87 about 3 years ago

#188 - [Bug] Sciex Does not Have Scan Numbers

Issue - State: open - Opened by mwang87 about 3 years ago

#187 - Translate from MotifDB

Issue - State: closed - Opened by mwang87 about 3 years ago - 1 comment

#186 - Supporting CDF Format

Issue - State: open - Opened by mwang87 about 3 years ago

#185 - [WIP] Networking Enrichment Query with MassQL

Pull Request - State: open - Opened by mwang87 about 3 years ago

#184 - [Engine] Fixing defect when it is not ANY mass

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#183 - [Engine] More properly implementing the mass defect filtering

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#182 - [Testing] Adding testing for brominated compounds

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#181 - [Bug] FBMN Querying

Issue - State: closed - Opened by mwang87 about 3 years ago - 3 comments

#180 - [Bug] Missing Result

Issue - State: open - Opened by mwang87 about 3 years ago - 2 comments

#179 - [Extraction] Enabling Extraction of JSON files from GNPS Libraries

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#178 - Updating Translate with OR

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#177 - [CMD] Add option to specify maximum file size

Issue - State: closed - Opened by mwang87 about 3 years ago

#176 - [Translator] Updating translator feature

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#175 - [Workflow] Recursive merge for scalability

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#174 - [Workflow] Exporting JSON to be more scalable

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#173 - [Language/Engine] Negation

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#172 - [Workflow] Creating new Environment docs

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#171 - [Workflow] Add XMX options

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#170 - [Language] Negation

Issue - State: closed - Opened by mwang87 about 3 years ago

#169 - [Dash] Revamp

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#168 - [Cluster Scheduling] Enabling Resume

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#167 - [Language/Engine] Mass Defect Rename and Update ANY keyword

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#166 - [WIP] Caching using Parquet and pre-caching files

Pull Request - State: open - Opened by mwang87 about 3 years ago

#164 - [Caching] Using Parquet as caching option

Issue - State: open - Opened by mwang87 about 3 years ago

#163 - [CommandLine] Enable multiple files and query flag explicit

Issue - State: open - Opened by mwang87 about 3 years ago

#162 - bump version

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#161 - [Workflow] Increasing Scalability

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#159 - [Workflow] Trace output needs to be server side

Issue - State: closed - Opened by mwang87 about 3 years ago

#158 - [Engine] Parallel Query Engine

Pull Request - State: open - Opened by mwang87 about 3 years ago

#157 - [Testing] Testing with Mobility

Issue - State: open - Opened by mwang87 about 3 years ago - 1 comment

#156 - [Language] Enabling Defect as qualifier

Issue - State: open - Opened by mwang87 about 3 years ago

#155 - [Refactor] Using pyteomics natively to get the CV for the unit

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#154 - [ProteoSAFe] Linkout to Falcon

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#153 - Mobility Variables in Min/Max

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#152 - Link to Falcon Workflow after MassQL

Issue - State: closed - Opened by mwang87 about 3 years ago

#151 - [Packaging] Updating the packages of massql commandline

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#150 - [Grammar/Engine] Mobility Support

Pull Request - State: closed - Opened by mwang87 about 3 years ago