Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mutalyzer/mutalyzer issues and pull requests

#104 - Three-letter amino acid for a stop codon

Issue - State: open - Opened by mihailefter 16 days ago

#103 - Options for using `describe_dna` with `mutalyzer`?

Issue - State: closed - Opened by TimD1 18 days ago - 2 comments

#102 - Add mutalyzer to `bioconda`?

Issue - State: open - Opened by TimD1 20 days ago

#101 - Error building description-extractor during installation

Issue - State: closed - Opened by TimD1 30 days ago - 3 comments

#100 - Mutalyzer for non-human organisms

Issue - State: open - Opened by jodyphelan 4 months ago - 6 comments

#99 - Duplication described as `delins` on RNA.

Issue - State: open - Opened by jfjlaros 5 months ago

#98 - view_variants endpoint mixes variants

Issue - State: open - Opened by Redmar-van-den-Berg 5 months ago

#97 - Response error with insertion query

Issue - State: open - Opened by steffie-m 7 months ago - 11 comments
Labels: enhancement

#95 - Add input support for other variant formats

Issue - State: open - Opened by mihailefter 8 months ago - 1 comment

#94 - Incorrect view for duplications on reverse strand

Issue - State: open - Opened by mihailefter 8 months ago - 6 comments

#93 - potential bug on 'AFFECTED PROTEIN PREDICTED SEQUENCE'

Issue - State: open - Opened by zhengzha2000 8 months ago - 1 comment

#92 - Development

Pull Request - State: closed - Opened by mihailefter 10 months ago

#91 - Coordinate system c does not match with M65131.1 c coordinate system.

Issue - State: closed - Opened by ptaschner about 1 year ago - 2 comments

#90 - unexpected keyword argument 'strand'

Issue - State: closed - Opened by jstraubhr 11 months ago - 4 comments

#89 - Could someone kindly provide an example of using Mutalyzer3 API with Python?

Issue - State: closed - Opened by xiucz 11 months ago - 8 comments
Labels: question

#88 - Problem with NR_ description

Issue - State: closed - Opened by Redmar-van-den-Berg about 1 year ago - 1 comment

#87 - Development

Pull Request - State: closed - Opened by mihailefter about 1 year ago

#86 - Problem with normalized position

Issue - State: closed - Opened by mathieulemieux about 1 year ago - 2 comments

#84 - Problem with Ensembl description

Issue - State: open - Opened by mihailefter about 1 year ago

#83 - Development

Pull Request - State: closed - Opened by mihailefter over 1 year ago

#82 - Disambiguation issue (selector).

Issue - State: open - Opened by jfjlaros over 1 year ago - 3 comments

#80 - Is the cache still supported?

Issue - State: closed - Opened by jpuntomarcos over 1 year ago - 1 comment

#79 - Error in normalizer: UnknownSeq is deprecated in biopython 1.81

Issue - State: closed - Opened by flashlab over 1 year ago - 1 comment

#78 - Cache API support and other fixes

Pull Request - State: closed - Opened by mihailefter almost 2 years ago

#77 - Short descriptions of variants are not interpreted correctly

Issue - State: closed - Opened by flohwie almost 2 years ago - 1 comment

#76 - Inconsistent transcript selector correction.

Issue - State: open - Opened by jfjlaros almost 2 years ago
Labels: enhancement

#75 - Missing semantic check(s) in sequence mode.

Issue - State: closed - Opened by jfjlaros almost 2 years ago
Labels: bug

#74 - Valid `r.` description rejected.

Issue - State: closed - Opened by jfjlaros almost 2 years ago

#73 - Coding transcript with no CDS annotation

Issue - State: open - Opened by mihailefter almost 2 years ago - 2 comments

#72 - Different approach for RNA/protein descriptions

Issue - State: closed - Opened by mihailefter almost 2 years ago - 1 comment

#71 - Bug? Incorrect p. generation in Normalizer with antisense insertions and duplications for NC refs

Issue - State: closed - Opened by HLSZim almost 2 years ago - 1 comment
Labels: bug

#70 - Valid protein descriptions rejected.

Issue - State: closed - Opened by jfjlaros almost 2 years ago

#69 - Wrong error after out of bounds error.

Issue - State: closed - Opened by jfjlaros about 2 years ago

#68 - Duplications normalization problem

Issue - State: closed - Opened by mihailefter about 2 years ago

#67 - Back translation (2).

Issue - State: closed - Opened by jfjlaros about 2 years ago

#66 - Back translation.

Issue - State: open - Opened by jfjlaros about 2 years ago

#65 - Transcript to chromosomal description

Pull Request - State: closed - Opened by mihailefter about 2 years ago

#63 - Warning for LRGs being phased out

Issue - State: open - Opened by mihailefter about 2 years ago

#62 - Change infos into warnings

Issue - State: open - Opened by mihailefter about 2 years ago

#61 - New extractor test integration

Pull Request - State: closed - Opened by mihailefter about 2 years ago

#60 - algebra should use the right backend implementation

Issue - State: closed - Opened by marksantcroos over 2 years ago - 1 comment

#59 - Catch up with interface change.

Pull Request - State: closed - Opened by marksantcroos over 2 years ago - 1 comment

#58 - cdna to genomic converter : is data up to date ?

Issue - State: open - Opened by qRp over 2 years ago - 7 comments

#57 - mutalyzer_name_checker error?

Issue - State: closed - Opened by asaki1986 over 2 years ago - 2 comments

#56 - Symmetric mapper

Pull Request - State: closed - Opened by mihailefter almost 3 years ago

#55 - Have Name Checker convert "chr1" to proper NCBI Gene ID

Issue - State: closed - Opened by cathtyner almost 3 years ago - 1 comment

#54 - Wrong insertion of a range.

Issue - State: open - Opened by jfjlaros almost 3 years ago - 2 comments
Labels: question

#53 - Wrong interpretation of conversions.

Issue - State: closed - Opened by jfjlaros almost 3 years ago - 4 comments
Labels: bug

#52 - Name checker bug.

Issue - State: closed - Opened by jfjlaros almost 3 years ago - 1 comment
Labels: bug

#49 - Mitochondrial reference not recognised.

Issue - State: closed - Opened by jfjlaros about 3 years ago - 2 comments

#48 - Api

Pull Request - State: closed - Opened by mihailefter about 3 years ago

#47 - Mapping is asymmetric.

Issue - State: closed - Opened by jfjlaros about 3 years ago

#46 - Variant overlap detection and variant ordering

Issue - State: closed - Opened by jkvis about 3 years ago

#45 - Server error for view variants endpoint

Issue - State: closed - Opened by mihailefter about 3 years ago

#44 - Rna and protein descriptions

Pull Request - State: closed - Opened by mihailefter about 3 years ago

#43 - bug converting cDNA to genomic position with Mutalyzer API v3

Issue - State: open - Opened by lmatalonga over 3 years ago - 5 comments

#42 - RNA descriptions.

Issue - State: closed - Opened by jfjlaros over 3 years ago - 5 comments

#41 - 3' rule don't apply to some hgvs.g

Issue - State: closed - Opened by fengfeng0918 over 3 years ago - 1 comment

#40 - there are some errors in readme.md

Issue - State: closed - Opened by fengfeng0918 over 3 years ago - 1 comment

#39 - Add support for Ensembl references

Pull Request - State: closed - Opened by mihailefter over 3 years ago

#37 - Incorrect mapping around splice sites.

Issue - State: open - Opened by jfjlaros over 3 years ago - 1 comment
Labels: question

#36 - Extend mapper

Pull Request - State: closed - Opened by mihailefter over 3 years ago

#35 - Server error.

Issue - State: closed - Opened by jfjlaros over 3 years ago

#34 - Various fixes

Pull Request - State: closed - Opened by mihailefter over 3 years ago

#33 - Various fixes

Pull Request - State: closed - Opened by mihailefter over 3 years ago

#32 - Fixes, tests, and extensions

Pull Request - State: closed - Opened by mihailefter almost 4 years ago

#31 - Refactor

Pull Request - State: closed - Opened by mihailefter almost 4 years ago

#30 - Negative strand shift

Issue - State: closed - Opened by mihailefter almost 4 years ago

#29 - Issue warning on non-sorted variants

Issue - State: closed - Opened by mihailefter almost 4 years ago - 1 comment

#28 - Check protein descriptions

Issue - State: closed - Opened by mihailefter almost 4 years ago

#27 - Missing affected transcripts.

Issue - State: closed - Opened by jfjlaros almost 4 years ago - 5 comments

#26 - Missing feedback.

Issue - State: closed - Opened by jfjlaros almost 4 years ago - 1 comment

#25 - Wrong normalisation.

Issue - State: closed - Opened by jfjlaros almost 4 years ago

#24 - Repeated sequences.

Issue - State: open - Opened by mihailefter about 4 years ago - 3 comments

#23 - Short sequence repeats.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#22 - Incorrect allele descriptions.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#21 - Refactor converter

Pull Request - State: closed - Opened by mihailefter about 4 years ago

#20 - No exons in transcript model.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#19 - Superfluous selector for transcript references.

Issue - State: closed - Opened by jfjlaros about 4 years ago

#18 - Position converter not working for chromosomes.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#17 - Description extractor not working.

Issue - State: closed - Opened by jfjlaros about 4 years ago

#16 - Incorrect example.

Issue - State: closed - Opened by jfjlaros about 4 years ago

#15 - Multiple entry points for position converter.

Issue - State: open - Opened by jfjlaros about 4 years ago

#14 - Wrong title.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#13 - `get_selectors` does not work for chromosomes.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#12 - Start and end positions swapped.

Issue - State: closed - Opened by jfjlaros about 4 years ago - 1 comment

#11 - Website stalls indefinitely.

Issue - State: closed - Opened by jfjlaros over 4 years ago - 1 comment

#10 - Usage of legacy locus selectors.

Issue - State: closed - Opened by jfjlaros over 4 years ago

#8 - Suggestion for performance.

Issue - State: closed - Opened by jfjlaros over 4 years ago - 1 comment

#7 - Errors are not formatted.

Issue - State: open - Opened by jfjlaros over 4 years ago

#6 - Halt on ambiguous descriptions.

Issue - State: closed - Opened by jfjlaros over 4 years ago

#5 - Missing warning messages.

Issue - State: closed - Opened by jfjlaros over 4 years ago - 1 comment

#4 - Descriptions are not clickable.

Issue - State: closed - Opened by jfjlaros over 4 years ago

#3 - Normalised description model missing.

Issue - State: closed - Opened by jfjlaros over 4 years ago

#2 - Gluing new model

Pull Request - State: closed - Opened by mihailefter over 4 years ago

#1 - Missing default return values.

Issue - State: open - Opened by jfjlaros over 4 years ago