muscbridge/PyDesigner issues and pull requests

#327 - DT.nii and KT.nii

Issue - State: open - Opened by Luoyu-Wang about 1 month ago

#326 - Fit constraints 0,1,1 outputs implausible DTI FA maps

Issue - State: open - Opened by rf2485 4 months ago

#325 - AttributeError: 'DWI' object has no attribute 'DTIvectors'

Issue - State: open - Opened by AvantiShri 5 months ago

#324 - PyDesigner no longer on pypi

Issue - State: open - Opened by rf2485 6 months ago - 1 comment

#323 - DKI dataset with one with only one phase-encoding direction

Issue - State: open - Opened by abhishekpatil32 7 months ago - 4 comments

#321 - INSTALL PYDESIGNER PROBLEM

Issue - State: open - Opened by leojcq89 8 months ago - 3 comments

#320 - Bump pillow from 10.0.1 to 10.3.0

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#319 - Necessity of `-it --rm` flags when running from docker

Issue - State: closed - Opened by AvantiShri 9 months ago - 2 comments

#318 - PyDesigner terminated with partial output - did it run out of memory?

Issue - State: open - Opened by AvantiShri 9 months ago - 2 comments

#317 - "User selected 0 non b=0 shells, but the command requires single-shell data"

Issue - State: closed - Opened by AvantiShri 10 months ago - 3 comments

#316 - Bump pillow from 10.0.1 to 10.2.0

Pull Request - State: closed - Opened by dependabot[bot] 10 months ago - 1 comment
Labels: dependencies

#315 - Just want to do image and tensor post-processing steps....

Issue - State: open - Opened by gonzoBlackMamba 10 months ago
Labels: help wanted

#312 - Overhaul PyDesigner Code 2

Pull Request - State: open - Opened by TheJaeger about 1 year ago - 2 comments
Labels: bugfix, documentation, feature

#311 - removed commas from processing docs

Pull Request - State: open - Opened by muscbridgelab about 1 year ago

#310 - Update running_pyd.rst to remove commas

Pull Request - State: closed - Opened by ryn-thorn about 1 year ago

#309 - Question about input

Issue - State: closed - Opened by ken-sakaie over 1 year ago - 3 comments
Labels: help wanted

#308 - High value voxels

Issue - State: open - Opened by ryn-thorn over 1 year ago - 2 comments

#307 - Draft: Overhaul PyDesigner Code

Pull Request - State: closed - Opened by TheJaeger over 1 year ago
Labels: bugfix, documentation, feature

#306 - The meaning of DTI parameters

Issue - State: open - Opened by NN3265 over 1 year ago - 1 comment

#302 - eddy_cpu

Issue - State: open - Opened by jdias001 over 1 year ago - 1 comment

#301 - No FBI outputs in the metrics folder

Issue - State: closed - Opened by pinghongyeh over 1 year ago - 5 comments

#299 - 298 Update PyDesigner for Official v1.0.0 Release

Pull Request - State: closed - Opened by TheJaeger almost 2 years ago
Labels: documentation

#298 - Update PyDesigner for Official v1.0.0 Release

Issue - State: closed - Opened by TheJaeger almost 2 years ago - 1 comment
Labels: high priority

#297 - ODFs and Tractography

Pull Request - State: closed - Opened by TheJaeger almost 2 years ago
Labels: documentation, feature

#296 - Handle --resume error with no multi-TE data

Pull Request - State: closed - Opened by j-tseng almost 2 years ago

#295 - Remove unused links in documentation

Issue - State: closed - Opened by TheJaeger almost 2 years ago - 1 comment
Labels: documentation

#294 - Handle possible floating point b-values

Pull Request - State: closed - Opened by j-tseng almost 2 years ago - 2 comments

#293 - --resume fails because of multi-TE check

Issue - State: closed - Opened by j-tseng almost 2 years ago - 1 comment

#292 - Float b-values throw error during int(x) conversion

Issue - State: closed - Opened by j-tseng almost 2 years ago - 2 comments

#291 - Difficulty starting the program

Issue - State: closed - Opened by orenpoliva about 2 years ago - 30 comments
Labels: documentation

#290 - Fix fODF orientation in .fib file

Pull Request - State: closed - Opened by TheJaeger over 2 years ago
Labels: bugfix

#289 - Add non-B0 mean shell extraction

Pull Request - State: closed - Opened by TheJaeger over 2 years ago
Labels: feature

#288 - How to use Pydesigner to generate metric maps without standard preprocessing？

Issue - State: closed - Opened by SvetlanaShine over 2 years ago

#287 - DTI/DKI fODFs

Issue - State: closed - Opened by TheJaeger over 2 years ago
Labels: feature

#286 - Add signal averaged output

Issue - State: closed - Opened by TheJaeger over 2 years ago
Labels: feature

#283 - Fix logic in multi-TE protocol detection

Pull Request - State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix, documentation

#279 - Type Error

Issue - State: closed - Opened by override641 almost 3 years ago - 3 comments

#278 - AKC Outlier Detection:

Issue - State: closed - Opened by override641 almost 3 years ago - 2 comments

#277 - Error

Issue - State: closed - Opened by override641 almost 3 years ago - 3 comments

#272 - Fix for SciPy cmake error

Pull Request - State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix

#268 - Fixes for #265

Pull Request - State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix, feature

#267 - Introduce CSF-masked smoothing

Pull Request - State: closed - Opened by TheJaeger almost 3 years ago
Labels: feature

#266 - Fitting before DKI

Issue - State: closed - Opened by surendra116083 almost 3 years ago - 5 comments

#265 - Fitting error

Issue - State: closed - Opened by saraponti about 3 years ago - 9 comments

#264 - Util.py possible missing "self."

Issue - State: closed - Opened by tmspvn about 3 years ago - 4 comments

#262 - tensor type

Issue - State: closed - Opened by YuchuanQiao about 3 years ago - 4 comments
Labels: question

#259 - PyDesigner not compatible with SynB0-DISCO outputs

Issue - State: closed - Opened by ryn-thorn over 3 years ago - 1 comment
Labels: feature, low priority

#258 - Fix HDF5 issues in Docker build

Pull Request - State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix

#257 - Multi TE support and FBI stability patches

Pull Request - State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix, documentation, feature

#256 - Add FBWM Rectification Flag

Issue - State: closed - Opened by TheJaeger over 3 years ago
Labels: feature

#255 - Calculated number larger than double floating point precision

Issue - State: closed - Opened by EmilieMcKinnon over 3 years ago

#254 - Dataset deemed DTI-type, but actually DKI

Issue - State: closed - Opened by j-tseng over 3 years ago - 2 comments

#251 - Fix b-value rounding to integer

Pull Request - State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix

#250 - Fix typo in MANIFEST

Pull Request - State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix

#248 - Add Rician to standard preprocessing

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix

#247 - Docker build fixes

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#246 - Fixes issues in Docker build due to CMake requirements

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#245 - Fix DKI radial kurtosis calcualtion and update WMTi

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#244 - DKI bugfix and WMTI update

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#243 - Fast-forward develop to master

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#242 - problem installing PyDesigner

Issue - State: closed - Opened by rosella1234 almost 4 years ago - 2 comments
Labels: wontfix

#241 - Update shell-sampling determination

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#240 - Update shell sampling determination

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix

#239 - Bugfix for dki_ak not being saved

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix

#238 - Change dki_ak fname

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix

#237 - Merge master into develop

Pull Request - State: closed - Opened by TheJaeger almost 4 years ago

#236 - How do I load phase encoding images (AP and PA) for eddy currents correction.

Issue - State: closed - Opened by LRAlvarado about 4 years ago - 3 comments
Labels: good first issue

#235 - Fiber Tracking: FBI tractography

Pull Request - State: closed - Opened by TheJaeger about 4 years ago
Labels: feature

#234 - Init tractography module

Pull Request - State: closed - Opened by TheJaeger about 4 years ago
Labels: feature

#233 - Fix SNR plotting issues

Pull Request - State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix

#232 - Eddy correction fails with Philips Achieva scanner

Issue - State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix, feature

#231 - OSError: Input data is not currently supported by PyDesigner

Issue - State: closed - Opened by cowry09 about 4 years ago - 9 comments
Labels: good first issue