Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / muscbridge/PyDesigner issues and pull requests
#326 - Fit constraints 0,1,1 outputs implausible DTI FA maps
Issue -
State: open - Opened by rf2485 4 months ago
#325 - AttributeError: 'DWI' object has no attribute 'DTIvectors'
Issue -
State: open - Opened by AvantiShri 4 months ago
#324 - PyDesigner no longer on pypi
Issue -
State: open - Opened by rf2485 5 months ago
- 1 comment
#323 - DKI dataset with one with only one phase-encoding direction
Issue -
State: open - Opened by abhishekpatil32 7 months ago
- 4 comments
#321 - INSTALL PYDESIGNER PROBLEM
Issue -
State: open - Opened by leojcq89 7 months ago
- 3 comments
#320 - Bump pillow from 10.0.1 to 10.3.0
Pull Request -
State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#319 - Necessity of `-it --rm` flags when running from docker
Issue -
State: closed - Opened by AvantiShri 8 months ago
- 2 comments
#318 - PyDesigner terminated with partial output - did it run out of memory?
Issue -
State: open - Opened by AvantiShri 8 months ago
- 2 comments
#317 - "User selected 0 non b=0 shells, but the command requires single-shell data"
Issue -
State: closed - Opened by AvantiShri 9 months ago
- 3 comments
#316 - Bump pillow from 10.0.1 to 10.2.0
Pull Request -
State: closed - Opened by dependabot[bot] 10 months ago
- 1 comment
Labels: dependencies
#315 - Just want to do image and tensor post-processing steps....
Issue -
State: open - Opened by gonzoBlackMamba 10 months ago
Labels: help wanted
#312 - Overhaul PyDesigner Code 2
Pull Request -
State: open - Opened by TheJaeger about 1 year ago
- 2 comments
Labels: bugfix, documentation, feature
#311 - removed commas from processing docs
Pull Request -
State: open - Opened by muscbridgelab about 1 year ago
#310 - Update running_pyd.rst to remove commas
Pull Request -
State: closed - Opened by ryn-thorn about 1 year ago
#309 - Question about input
Issue -
State: closed - Opened by ken-sakaie about 1 year ago
- 3 comments
Labels: help wanted
#308 - High value voxels
Issue -
State: open - Opened by ryn-thorn over 1 year ago
- 2 comments
#307 - Draft: Overhaul PyDesigner Code
Pull Request -
State: closed - Opened by TheJaeger over 1 year ago
Labels: bugfix, documentation, feature
#306 - The meaning of DTI parameters
Issue -
State: open - Opened by NN3265 over 1 year ago
- 1 comment
#302 - eddy_cpu
Issue -
State: open - Opened by jdias001 over 1 year ago
- 1 comment
#301 - No FBI outputs in the metrics folder
Issue -
State: closed - Opened by pinghongyeh over 1 year ago
- 5 comments
#299 - 298 Update PyDesigner for Official v1.0.0 Release
Pull Request -
State: closed - Opened by TheJaeger almost 2 years ago
Labels: documentation
#298 - Update PyDesigner for Official v1.0.0 Release
Issue -
State: closed - Opened by TheJaeger almost 2 years ago
- 1 comment
Labels: high priority
#297 - ODFs and Tractography
Pull Request -
State: closed - Opened by TheJaeger almost 2 years ago
Labels: documentation, feature
#296 - Handle --resume error with no multi-TE data
Pull Request -
State: closed - Opened by j-tseng almost 2 years ago
#295 - Remove unused links in documentation
Issue -
State: closed - Opened by TheJaeger almost 2 years ago
- 1 comment
Labels: documentation
#294 - Handle possible floating point b-values
Pull Request -
State: closed - Opened by j-tseng almost 2 years ago
- 2 comments
#293 - --resume fails because of multi-TE check
Issue -
State: closed - Opened by j-tseng almost 2 years ago
- 1 comment
#292 - Float b-values throw error during int(x) conversion
Issue -
State: closed - Opened by j-tseng almost 2 years ago
- 2 comments
#291 - Difficulty starting the program
Issue -
State: closed - Opened by orenpoliva almost 2 years ago
- 30 comments
Labels: documentation
#290 - Fix fODF orientation in .fib file
Pull Request -
State: closed - Opened by TheJaeger over 2 years ago
Labels: bugfix
#289 - Add non-B0 mean shell extraction
Pull Request -
State: closed - Opened by TheJaeger over 2 years ago
Labels: feature
#288 - How to use Pydesigner to generate metric maps without standard preprocessing?
Issue -
State: closed - Opened by SvetlanaShine over 2 years ago
#287 - DTI/DKI fODFs
Issue -
State: closed - Opened by TheJaeger over 2 years ago
Labels: feature
#286 - Add signal averaged output
Issue -
State: closed - Opened by TheJaeger over 2 years ago
Labels: feature
#283 - Fix logic in multi-TE protocol detection
Pull Request -
State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix, documentation
#279 - Type Error
Issue -
State: closed - Opened by override641 almost 3 years ago
- 3 comments
#278 - AKC Outlier Detection:
Issue -
State: closed - Opened by override641 almost 3 years ago
- 2 comments
#277 - Error
Issue -
State: closed - Opened by override641 almost 3 years ago
- 3 comments
#272 - Fix for SciPy cmake error
Pull Request -
State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix
#268 - Fixes for #265
Pull Request -
State: closed - Opened by TheJaeger almost 3 years ago
Labels: bugfix, feature
#267 - Introduce CSF-masked smoothing
Pull Request -
State: closed - Opened by TheJaeger almost 3 years ago
Labels: feature
#266 - Fitting before DKI
Issue -
State: closed - Opened by surendra116083 almost 3 years ago
- 5 comments
#265 - Fitting error
Issue -
State: closed - Opened by saraponti almost 3 years ago
- 9 comments
#264 - Util.py possible missing "self."
Issue -
State: closed - Opened by tmspvn almost 3 years ago
- 4 comments
#262 - tensor type
Issue -
State: closed - Opened by YuchuanQiao about 3 years ago
- 4 comments
Labels: question
#259 - PyDesigner not compatible with SynB0-DISCO outputs
Issue -
State: closed - Opened by ryn-thorn over 3 years ago
- 1 comment
Labels: feature, low priority
#258 - Fix HDF5 issues in Docker build
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix
#257 - Multi TE support and FBI stability patches
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix, documentation, feature
#256 - Add FBWM Rectification Flag
Issue -
State: closed - Opened by TheJaeger over 3 years ago
Labels: feature
#255 - Calculated number larger than double floating point precision
Issue -
State: closed - Opened by EmilieMcKinnon over 3 years ago
#254 - Dataset deemed DTI-type, but actually DKI
Issue -
State: closed - Opened by j-tseng over 3 years ago
- 2 comments
#251 - Fix b-value rounding to integer
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix
#250 - Fix typo in MANIFEST
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix
#248 - Add Rician to standard preprocessing
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
Labels: bugfix
#247 - Docker build fixes
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
#246 - Fixes issues in Docker build due to CMake requirements
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
#245 - Fix DKI radial kurtosis calcualtion and update WMTi
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
#244 - DKI bugfix and WMTI update
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
#243 - Fast-forward develop to master
Pull Request -
State: closed - Opened by TheJaeger over 3 years ago
#242 - problem installing PyDesigner
Issue -
State: closed - Opened by rosella1234 over 3 years ago
- 2 comments
Labels: wontfix
#241 - Update shell-sampling determination
Pull Request -
State: closed - Opened by TheJaeger almost 4 years ago
#240 - Update shell sampling determination
Pull Request -
State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix
#239 - Bugfix for dki_ak not being saved
Pull Request -
State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix
#238 - Change dki_ak fname
Pull Request -
State: closed - Opened by TheJaeger almost 4 years ago
Labels: bugfix
#237 - Merge master into develop
Pull Request -
State: closed - Opened by TheJaeger almost 4 years ago
#236 - How do I load phase encoding images (AP and PA) for eddy currents correction.
Issue -
State: closed - Opened by LRAlvarado about 4 years ago
- 3 comments
Labels: good first issue
#235 - Fiber Tracking: FBI tractography
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: feature
#234 - Init tractography module
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: feature
#233 - Fix SNR plotting issues
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix
#232 - Eddy correction fails with Philips Achieva scanner
Issue -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix, feature
#231 - OSError: Input data is not currently supported by PyDesigner
Issue -
State: closed - Opened by cowry09 about 4 years ago
- 9 comments
Labels: good first issue
#230 - Add bval scaling
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix, feature
#229 - Fix DTI protocol (#228)
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#228 - Fix DTI protocol
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix
#227 - Update develop to master
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#226 - Improve FBI Robustness
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#225 - Improve FBI fit robustness
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix, feature
#224 - Output fODF maps and make l_max variable
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: feature
#223 - Output fODF map
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#222 - Merge master into develop
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#221 - Change fname of FBI AWF
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#220 - Change fname of FBI AWF
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#219 - Merge master to develop
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#218 - Fix `--nthreads` and FBI issues
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#217 - Fix for nthreads issue
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#216 - FBI and FBWM Additions
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
#215 - FBI and FBWM Calculation
Pull Request -
State: closed - Opened by TheJaeger about 4 years ago
Labels: bugfix, documentation, feature
#214 - FBI is better than WMTI for white matter modelling
Issue -
State: closed - Opened by TheJaeger over 4 years ago
#213 - Fails with MRtrix v3.0.1
Issue -
State: closed - Opened by TheJaeger over 4 years ago
Labels: bugfix
#212 - Test
Issue -
State: closed - Opened by TheJaeger over 4 years ago
#211 - PyD-0.32 fails when QC plotting
Issue -
State: closed - Opened by gonzoBlackMamba over 4 years ago
- 3 comments
#210 - Update PyD to DKE conversion scripts
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
#209 - Update PyD to DKE conversion script
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
Labels: bugfix, feature
#208 - Fix #194
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
#207 - Update changelog
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
#206 - Transpose B0 BVALS in json2fslgrad
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
Labels: bugfix
#204 - WMTI Calculation Fix
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
Labels: feature
#202 - Fixed dockerfile bugs
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
Labels: bugfix
#200 - Bugfix for WMTI error
Pull Request -
State: closed - Opened by TheJaeger over 4 years ago
Labels: bugfix
#199 - Validate WMTI metrics
Issue -
State: closed - Opened by TheJaeger over 4 years ago
- 4 comments
Labels: help wanted