multiscale/muscle3 issues and pull requests

#303 - Consider introducing event-based AOP

Issue - State: open - Opened by LourensVeen about 1 month ago - 1 comment

#302 - Remove `typing_extensions` dependency

Pull Request - State: open - Opened by maarten-ic about 1 month ago

#301 - Feature/mmsf validator

Pull Request - State: open - Opened by maarten-ic about 1 month ago

#300 - Feature/unit test cleanup threads

Pull Request - State: open - Opened by maarten-ic about 1 month ago

#299 - Feature/deadlock detection

Pull Request - State: open - Opened by maarten-ic about 2 months ago

#298 - Switch to pyproject.toml

Issue - State: open - Opened by LourensVeen about 2 months ago
Labels: good first issue

#297 - Installation fails with Python 3.12

Issue - State: closed - Opened by ETsingos 2 months ago - 3 comments
Labels: ready for release

#296 - Feature request: inclusion of a hook in muscle_manager to call a user supplied script before starting the run

Issue - State: open - Opened by DavidPCoster 5 months ago

#295 - Feature request: inclusion of output from a code as the value for a variable in a YMMSL file

Issue - State: open - Opened by DavidPCoster 5 months ago

#294 - Feature request: inclusion of environment variables in the YMMSL files

Issue - State: open - Opened by DavidPCoster 5 months ago

#293 - Manager prints error on successful completion

Issue - State: closed - Opened by LourensVeen 5 months ago - 1 comment
Labels: ready for release

#292 - Easy debug build of libmuscle/libymmsl native

Issue - State: open - Opened by LourensVeen 6 months ago

#291 - Instance_create fails in Fortran if debugger is attached

Issue - State: closed - Opened by AreWeDreaming 6 months ago - 6 comments

#290 - Add RADICAL-Pilot backend

Issue - State: open - Opened by LourensVeen 6 months ago

#289 - Refactor communicator

Pull Request - State: closed - Opened by LourensVeen 7 months ago

#288 - Use Data instead of DataConstRef internally

Issue - State: open - Opened by LourensVeen 8 months ago - 1 comment

#287 - Consider splitting Python package

Issue - State: open - Opened by LourensVeen 8 months ago

#286 - Copying Data objects containing a grid does not copy the data

Issue - State: open - Opened by LourensVeen 9 months ago
Labels: documentation

#285 - muscle_settings_in not drained

Issue - State: open - Opened by LourensVeen 9 months ago

#284 - data.hpp includes msgpack.hpp

Issue - State: open - Opened by LourensVeen 9 months ago

#283 - Replace the unmaintained netifaces with psutil

Pull Request - State: closed - Opened by LourensVeen 9 months ago

#282 - Netifaces is unmaintained

Issue - State: closed - Opened by LourensVeen 9 months ago - 1 comment
Labels: ready for release

#281 - Fix and improve profiling

Pull Request - State: closed - Opened by LourensVeen 10 months ago

#280 - Checkpoint wallclock time implementation differences

Issue - State: open - Opened by LourensVeen 10 months ago

#279 - Instance and Communicator both check for connectedness

Issue - State: open - Opened by LourensVeen 10 months ago - 1 comment

#278 - Segmentation fault (core dumped) on FASTA file with 4 thousand sequences

Issue - State: closed - Opened by rhysf 10 months ago - 2 comments

#277 - Broken link: the link to the code of conduct in README.md

Issue - State: open - Opened by Elisa-on-GitHub 10 months ago
Labels: good first issue

#276 - InstanceManager crashes on shutdown if no stderr.txt is present

Issue - State: open - Opened by LourensVeen 11 months ago
Labels: good first issue

#275 - mypy doesn't see InstanceFlags

Issue - State: open - Opened by LourensVeen 11 months ago
Labels: good first issue

#274 - "KeyError: ..." when running "muscle3 profile --instances ..." (version 0.7.1)

Issue - State: open - Opened by DavidPCoster 11 months ago - 5 comments
Labels: ready for release

#273 - Is it possible to derive the list of currently running actors from the performance database?

Issue - State: open - Opened by DavidPCoster 11 months ago - 4 comments

#272 - muscle3 profile command fails because it cannot find entry in perfromance.sqlite database associated with a name of an instance

Issue - State: open - Opened by YehorYudinIPP 12 months ago - 3 comments

#271 - Possible race conditions might still be occurring in 0.7.1 ...

Issue - State: open - Opened by DavidPCoster 12 months ago - 9 comments

#270 - MessageObject type not described in the Python API docs

Issue - State: open - Opened by LourensVeen 12 months ago

#269 - Improve profiling of simulation shutdown

Pull Request - State: closed - Opened by LourensVeen 12 months ago

#268 - "Multiple threads per MPI process is not supported yet. Please make an issue on GitHub."

Issue - State: open - Opened by DavidPCoster about 1 year ago
Labels: instance-mgmt

#267 - Record DISCONNECT_WAIT in profile

Pull Request - State: closed - Opened by LourensVeen about 1 year ago

#266 - Improve timeline plot

Pull Request - State: closed - Opened by LourensVeen about 1 year ago

#265 - Improve timeline plot

Issue - State: closed - Opened by LourensVeen about 1 year ago - 1 comment
Labels: ready for release

#264 - Data::grid() version that allocates memory

Issue - State: open - Opened by LourensVeen about 1 year ago - 1 comment

#263 - "cec" component wrongly shown as "running" the whole time.

Issue - State: closed - Opened by DavidPCoster about 1 year ago - 6 comments
Labels: ready for release

#262 - Python Grid class should have str()

Issue - State: open - Opened by LourensVeen about 1 year ago
Labels: good first issue

#261 - Recursive dictionary on C++ and python/matlab

Issue - State: closed - Opened by rnouail about 1 year ago - 3 comments

#260 - Send a list of data

Issue - State: closed - Opened by rnouail about 1 year ago - 13 comments

#259 - Add DCR::describe()

Issue - State: open - Opened by LourensVeen about 1 year ago

#258 - Compiler warning about implicit Data copy constructor

Issue - State: closed - Opened by LourensVeen about 1 year ago - 2 comments
Labels: ready for release

#257 - VSCode debugging recipe (python)

Issue - State: open - Opened by AreWeDreaming about 1 year ago - 5 comments
Labels: good first issue, documentation

#256 - Protect manager connection from race conditions in MMPClient

Pull Request - State: closed - Opened by LourensVeen about 1 year ago - 1 comment

#255 - Use of instance sets for spatial scale separation should be documented

Issue - State: open - Opened by LourensVeen about 1 year ago
Labels: documentation

#254 - init shown as running the whole time ...

Issue - State: closed - Opened by DavidPCoster about 1 year ago - 5 comments
Labels: ready for release

#253 - rotate x-axis labels by 45 degrees

Pull Request - State: closed - Opened by DavidPCoster about 1 year ago - 1 comment

#252 - Calling DCR::storage_order() on a non-grid gives error about ::shape()

Issue - State: open - Opened by LourensVeen about 1 year ago

#251 - Add a grid access operator in the C++ API

Issue - State: open - Opened by LourensVeen about 1 year ago

#250 - ValueError: invalid literal for int() with base 10: '0,40' received when submitting to a batch node (via SLURM)

Issue - State: open - Opened by DavidPCoster about 1 year ago - 10 comments
Labels: documentation

#249 - Python package seems to be missing py.typed marker

Issue - State: closed - Opened by LourensVeen about 1 year ago - 1 comment
Labels: ready for release

#248 - Adding an option to the YMMSL file to activate a python environment

Issue - State: open - Opened by DavidPCoster about 1 year ago - 4 comments
Labels: documentation

#247 - After increasing the number of copies of my physics code from 10 to 20, I have started on seeing errors ...

Issue - State: open - Opened by DavidPCoster over 1 year ago - 7 comments
Labels: ready for release

#246 - Would it be possible to get environment variables in the YMMSL file?

Issue - State: open - Opened by DavidPCoster over 1 year ago - 8 comments

#245 - Would it be possible to change the behaviour of actors with respect to their working directories?

Issue - State: closed - Opened by DavidPCoster over 1 year ago - 1 comment

#244 - Would it be possible to rotate the x-axis labels?

Issue - State: closed - Opened by DavidPCoster over 1 year ago - 7 comments
Labels: ready for release

#243 - Bug when looking at the timeline profiling information

Issue - State: closed - Opened by DavidPCoster over 1 year ago - 2 comments
Labels: ready for release

#242 - C++ API documentation mentions libmuscle::impl

Issue - State: closed - Opened by LourensVeen over 1 year ago - 1 comment
Labels: ready for release

#241 - Fix incorrect LDFLAGS for C++ and Fortran tests

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#240 - Easybuild support

Issue - State: open - Opened by LourensVeen over 1 year ago

#239 - Document dynamic ports API

Issue - State: open - Opened by LourensVeen over 1 year ago
Labels: documentation

#238 - Add --location-file option to muscle_manager (#216)

Pull Request - State: closed - Opened by LourensVeen over 1 year ago - 1 comment

#237 - Remove Codacy, it doesn't help

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#236 - Resource planning fixes

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#235 - Document special settings

Issue - State: open - Opened by LourensVeen over 1 year ago
Labels: documentation

#234 - Fix DataConstRef constness

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#233 - Allow iterating through settings (#170)

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#232 - Finish initial profiling functionality

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#231 - Compilation issue with msgpack

Issue - State: closed - Opened by rnouail over 1 year ago - 10 comments

#230 - Intel CI broken

Issue - State: closed - Opened by LourensVeen over 1 year ago - 1 comment
Labels: ready for release

#229 - Add support for macOS

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#228 - Fortran documentation mentions as_string

Issue - State: closed - Opened by LourensVeen over 1 year ago - 2 comments
Labels: documentation, ready for release

#227 - Update test_snapshot_complex_coupling

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#226 - Remove superfluous ';' (fix pedantic gcc warnings)

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#225 - Fortran instance%list_settings() and tests

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#224 - Components that lose a peer connection show as crashed

Issue - State: open - Opened by LourensVeen over 1 year ago - 1 comment

#223 - Handle instances that quit with 0 before registering

Pull Request - State: closed - Opened by LourensVeen over 1 year ago - 1 comment

#222 - Improve error checking when using the Python runner

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#221 - Output final lines of log files on error for easier debugging

Pull Request - State: closed - Opened by LourensVeen over 1 year ago

#220 - GitHub Action CI obsolescent

Issue - State: closed - Opened by LourensVeen over 1 year ago - 1 comment

#219 - Draft: Graphical plot of yMMSL configuration

Pull Request - State: open - Opened by DaanVanVugt over 1 year ago

#218 - update docs on editable mode install

Pull Request - State: closed - Opened by DaanVanVugt over 1 year ago

#217 - muscle3 cannot import libmuscle.planner in editable mode install

Issue - State: closed - Opened by DaanVanVugt over 1 year ago - 1 comment

#216 - Manager doesn't flush print of its ip:port string

Issue - State: closed - Opened by peter-t-fox over 1 year ago - 6 comments
Labels: ready for release

#215 - Update integration test

Pull Request - State: closed - Opened by maarten-ic over 1 year ago - 2 comments

#214 - Format log messages before submission to manager

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#213 - Update documentation

Pull Request - State: closed - Opened by maarten-ic over 1 year ago - 1 comment

#212 - Feature/run all check consistent

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#211 - Encapsulate connection lost errors

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#210 - Feature/separate mpi namespace

Pull Request - State: closed - Opened by maarten-ic over 1 year ago - 1 comment

#209 - Feature/oo fortran

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#208 - F_INIT -> O_F loops cause the planner to hang

Issue - State: closed - Opened by LourensVeen over 1 year ago - 1 comment
Labels: ready for release

#207 - Feature/binding improvements

Pull Request - State: closed - Opened by maarten-ic over 1 year ago

#206 - Manager should print only error message if the yMMSL file(s) don't load correctly

Issue - State: closed - Opened by LourensVeen over 1 year ago

#205 - Manager hangs/crashes if resources are missing for a component

Issue - State: closed - Opened by LourensVeen over 1 year ago - 2 comments

#204 - Type annotations broken in wrapper generator

Issue - State: closed - Opened by LourensVeen over 1 year ago

GitHub / multiscale/muscle3 issues and pull requests