Ecosyste.ms: Issues

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GitHub / muellan/metacache issues and pull requests

#45 - multithreading for db construction?

Issue - State: open - Opened by rjsorr 4 months ago

#45 - multithreading for db construction?

Issue - State: open - Opened by rjsorr 4 months ago

#44 - What is the difference between hitmin and hitdiff?

Issue - State: closed - Opened by donovan-parks 5 months ago - 5 comments
Labels: question

#44 - What is the difference between hitmin and hitdiff?

Issue - State: closed - Opened by donovan-parks 5 months ago - 5 comments
Labels: question

#43 - Provide memory mapping option?

Issue - State: open - Opened by ChillarAnand 7 months ago - 1 comment
Labels: question

#43 - Provide memory mapping option?

Issue - State: open - Opened by ChillarAnand 7 months ago - 1 comment
Labels: question

#42 - Issues with partitioned DB and merging

Issue - State: open - Opened by jaimeortiz-david 8 months ago

#42 - Issues with partitioned DB and merging

Issue - State: open - Opened by jaimeortiz-david 8 months ago

#41 - Segmentation fault (core dump) issue on custom DB

Issue - State: closed - Opened by donovan-parks 11 months ago - 2 comments
Labels: bug

#41 - Segmentation fault (core dump) issue on custom DB

Issue - State: closed - Opened by donovan-parks 11 months ago - 2 comments
Labels: bug

#39 - Scientific notation in abundance file result in rounding errors

Issue - State: open - Opened by donovan-h-parks over 1 year ago - 5 comments
Labels: bug

#39 - Scientific notation in abundance file result in rounding errors

Issue - State: open - Opened by donovan-h-parks over 1 year ago - 5 comments
Labels: bug

#38 - GPU version on bioconda

Issue - State: closed - Opened by fgvieira over 1 year ago - 3 comments

#38 - GPU version on bioconda

Issue - State: closed - Opened by fgvieira over 1 year ago - 3 comments

#37 - Guidance for working with large reference data sets

Issue - State: open - Opened by ohickl almost 2 years ago - 6 comments
Labels: question

#37 - Guidance for working with large reference data sets

Issue - State: open - Opened by ohickl almost 2 years ago - 6 comments
Labels: question

#36 - Compiling with uint64_t

Issue - State: closed - Opened by ohickl almost 2 years ago - 5 comments
Labels: bug

#36 - Compiling with uint64_t

Issue - State: closed - Opened by ohickl almost 2 years ago - 5 comments
Labels: bug

#35 - Unranked targets when building custom DB

Issue - State: open - Opened by donovan-h-parks about 2 years ago - 5 comments

#35 - Unranked targets when building custom DB

Issue - State: open - Opened by donovan-h-parks about 2 years ago - 5 comments

#34 - Make throws the Invalid Option error if multiple macros are passed

Issue - State: closed - Opened by banderoz over 2 years ago - 1 comment
Labels: bug

#34 - Make throws the Invalid Option error if multiple macros are passed

Issue - State: closed - Opened by banderoz over 2 years ago - 1 comment
Labels: bug

#33 - Merging results from querying partitioned database

Issue - State: closed - Opened by jaimeortiz-david over 2 years ago - 16 comments

#33 - Merging results from querying partitioned database

Issue - State: closed - Opened by jaimeortiz-david over 2 years ago - 16 comments

#32 - Building a custom DB

Issue - State: closed - Opened by donovan-parks over 2 years ago - 2 comments

#32 - Building a custom DB

Issue - State: closed - Opened by donovan-parks over 2 years ago - 2 comments

#31 - Results Output Visualization

Issue - State: closed - Opened by punnettsun almost 3 years ago - 1 comment

#31 - Results Output Visualization

Issue - State: closed - Opened by punnettsun almost 3 years ago - 1 comment

#30 - Database Build Files

Issue - State: closed - Opened by punnettsun almost 3 years ago - 2 comments

#30 - Database Build Files

Issue - State: closed - Opened by punnettsun almost 3 years ago - 2 comments

#29 - Ion Xpress (Ion Torrent)

Issue - State: open - Opened by jaimeortiz-david almost 3 years ago - 1 comment
Labels: question

#28 - Segmentation fault when using --lowest species

Issue - State: open - Opened by donovan-h-parks almost 3 years ago - 3 comments

#28 - Segmentation fault when using --lowest species

Issue - State: open - Opened by donovan-h-parks almost 3 years ago - 3 comments

#27 - Segmentation fault (core dumped)

Issue - State: closed - Opened by jaimeortiz-david almost 3 years ago - 6 comments

#27 - Segmentation fault (core dumped)

Issue - State: closed - Opened by jaimeortiz-david almost 3 years ago - 6 comments

#26 - Interpreting abundance profile

Issue - State: closed - Opened by donovan-h-parks about 3 years ago - 5 comments

#26 - Interpreting abundance profile

Issue - State: closed - Opened by donovan-h-parks about 3 years ago - 5 comments

#25 - Report MetaCache version

Issue - State: closed - Opened by donovan-h-parks about 3 years ago - 1 comment

#25 - Report MetaCache version

Issue - State: closed - Opened by donovan-h-parks about 3 years ago - 1 comment

#24 - Problem building DB with metacache-build-refseq

Issue - State: closed - Opened by donovan-parks about 3 years ago - 6 comments

#24 - Problem building DB with metacache-build-refseq

Issue - State: closed - Opened by donovan-parks about 3 years ago - 6 comments

#23 - metacache-build-refseq gets killed at 46% every time i try to build the database

Issue - State: closed - Opened by clanzett over 3 years ago - 2 comments

#23 - metacache-build-refseq gets killed at 46% every time i try to build the database

Issue - State: closed - Opened by clanzett over 3 years ago - 2 comments

#22 - Database load times highly and unexpectedly non-linear

Issue - State: closed - Opened by jdwinkler-lanzatech over 3 years ago - 7 comments
Labels: bug

#22 - Database load times highly and unexpectedly non-linear

Issue - State: closed - Opened by jdwinkler-lanzatech over 3 years ago - 7 comments
Labels: bug

#21 - Using as a library

Issue - State: open - Opened by anuradhawick over 3 years ago - 1 comment
Labels: question

#21 - Using as a library

Issue - State: open - Opened by anuradhawick over 3 years ago - 1 comment
Labels: question

#20 - Typo

Pull Request - State: closed - Opened by frederic-mahe over 3 years ago - 1 comment

#20 - Typo

Pull Request - State: closed - Opened by frederic-mahe over 3 years ago - 1 comment

#19 - AFS20 database construction

Issue - State: closed - Opened by TahaShahroodi almost 4 years ago - 4 comments

#19 - AFS20 database construction

Issue - State: closed - Opened by TahaShahroodi almost 4 years ago - 4 comments

#18 - long reads

Issue - State: open - Opened by xgnusr over 4 years ago - 4 comments
Labels: question

#18 - long reads

Issue - State: open - Opened by xgnusr over 4 years ago - 4 comments
Labels: question

#17 - Out file interpretation

Issue - State: open - Opened by bielasilva over 4 years ago - 2 comments
Labels: question

#17 - Out file interpretation

Issue - State: open - Opened by bielasilva over 4 years ago - 2 comments
Labels: question

#16 - Allow for more threads?

Issue - State: closed - Opened by punnettsun over 4 years ago - 9 comments

#16 - Allow for more threads?

Issue - State: closed - Opened by punnettsun over 4 years ago - 9 comments

#15 - Classification abundances output not showing all ranks

Issue - State: closed - Opened by punnettsun over 4 years ago - 4 comments
Labels: question

#15 - Classification abundances output not showing all ranks

Issue - State: closed - Opened by punnettsun over 4 years ago - 4 comments
Labels: question

#14 - Custom Database Creation

Issue - State: closed - Opened by punnettsun over 4 years ago - 11 comments
Labels: question

#14 - Custom Database Creation

Issue - State: closed - Opened by punnettsun over 4 years ago - 11 comments
Labels: question

#13 - Strain Level Database

Issue - State: closed - Opened by punnettsun over 4 years ago - 2 comments
Labels: question

#13 - Strain Level Database

Issue - State: closed - Opened by punnettsun over 4 years ago - 2 comments
Labels: question

#12 - Support for gzipped reads

Issue - State: closed - Opened by donovan-h-parks almost 5 years ago - 12 comments
Labels: enhancement

#11 - Form and variety

Issue - State: closed - Opened by donovan-h-parks about 5 years ago - 2 comments

#10 - Interpretation of reported abundance table

Issue - State: closed - Opened by donovan-h-parks about 5 years ago - 6 comments

#9 - target limit: number of genomes or sequences?

Issue - State: closed - Opened by donovan-h-parks about 5 years ago - 2 comments

#8 - Segmentation fault

Issue - State: closed - Opened by alex-dem over 5 years ago - 7 comments
Labels: bug

#7 - separator not properly handled in the output

Issue - State: closed - Opened by leoqiang about 6 years ago - 5 comments

#6 - metacache-build-refseq and download-ncbi-genomes not downloading genomes

Issue - State: closed - Opened by sturne29 almost 7 years ago - 4 comments

#5 - speedup refseq downloads - suggestion not issue

Issue - State: closed - Opened by accopeland about 7 years ago - 3 comments
Labels: enhancement

#4 - error compiling metacache

Issue - State: closed - Opened by ghost about 7 years ago - 5 comments

#3 - Enhancement: Provide NCBI taxids in output

Issue - State: closed - Opened by sjaenick about 7 years ago - 2 comments

#2 - redirect progress messages to stderr

Pull Request - State: closed - Opened by sjaenick about 7 years ago

#1 - Argument handling

Issue - State: closed - Opened by sjaenick about 7 years ago - 2 comments