msproteomicstools/msproteomicstools issues and pull requests

#117 - spec.lib to tsv

Issue - State: open - Opened by herbiyuliantoro 3 months ago - 1 comment

#116 - Issue/113

Pull Request - State: closed - Opened by lcb almost 3 years ago

#115 - TRIC Exception: Recursed too much in FDR iteration.

Issue - State: open - Opened by vidyavenkatraman almost 3 years ago

#114 - TRIC error "terminate called after throwing an instance of 'std::invalid_argument' what(): Needs at least 2 values.

Issue - State: open - Opened by vidyavenkatraman about 3 years ago

#113 - spectrast2tsv.py "N-term(UniMod:1)" vs ".(Unimod:1)" modification in Openswath format spectral Library

Issue - State: closed - Opened by CharuKMidha about 3 years ago - 8 comments

#112 - PyMSNumpress failes to install

Issue - State: open - Opened by Sticknmuv over 3 years ago

#111 - TRIC alignment failing with larger libraries

Issue - State: open - Opened by kerazo93 almost 4 years ago

#110 - Failed to Install PyMSNumpress in Anaconda Python 3.8

Issue - State: open - Opened by somakray about 4 years ago - 3 comments

#109 - Code for chromatogram alignment

Pull Request - State: open - Opened by shubham1637 over 4 years ago - 1 comment

#108 - Using msproteomicstools fails with "Requested method 'cminimal' but extensions missing"

Issue - State: open - Opened by caldodge over 4 years ago

#107 - fail to install

Issue - State: open - Opened by ChengkangLi almost 5 years ago - 7 comments

#106 - [FIX] remove common endings for sqMass and chrom files

Pull Request - State: closed - Opened by hroest about 5 years ago

#105 - Update modifications_default.tsv

Pull Request - State: open - Opened by hroest over 5 years ago

#104 - Installation issue

Issue - State: closed - Opened by KunathBJ over 5 years ago - 2 comments

#103 - wrong modification assignment in modifications_default.tsv

Issue - State: open - Opened by AnnaLobas over 5 years ago - 1 comment

#102 - [RELEASE] Tapir v1.2 release

Pull Request - State: closed - Opened by hroest over 5 years ago - 1 comment

#101 - Feature/sqlite

Pull Request - State: closed - Opened by hroest over 5 years ago - 5 comments

#100 - [TEST] add python 3.7

Pull Request - State: closed - Opened by hroest over 5 years ago

#99 - Update ProtFDRmProphet2Mayu.py

Pull Request - State: closed - Opened by hroest almost 6 years ago

#98 - remapping protein IDs using SpectraST & tsv2spectrast.py

Issue - State: open - Opened by 1Moe about 6 years ago - 1 comment

#97 - Revert "[FIX] Acetylation / Carbamylation fix for TPP annotation"

Pull Request - State: closed - Opened by hroest over 6 years ago - 2 comments

#96 - Feature/sqmass

Pull Request - State: closed - Opened by hroest over 6 years ago

#95 - Deploy win

Pull Request - State: closed - Opened by hroest over 6 years ago

#94 - TRIC alignment error

Issue - State: closed - Opened by sjr24 over 6 years ago - 5 comments

#93 - Dependency on Old pyzmml

Issue - State: open - Opened by DarioS over 6 years ago - 2 comments

#92 - [FEATURE] get mapping directly from SQL data

Pull Request - State: closed - Opened by hroest over 6 years ago

#91 - [FIX] fix travis

Pull Request - State: closed - Opened by hroest over 6 years ago

#90 - Feature/cython py3

Pull Request - State: closed - Opened by hroest over 6 years ago - 1 comment

#89 - Extend viewer

Pull Request - State: closed - Opened by hroest over 6 years ago - 1 comment

#88 - [FIX] Acetylation / Carbamylation fix for TPP annotation

Pull Request - State: closed - Opened by grosenberger over 6 years ago

#87 - Anaconda version is much older than PyPi version

Issue - State: open - Opened by bretttully over 6 years ago - 4 comments

#86 - Feature/swath reader

Pull Request - State: closed - Opened by hroest over 6 years ago

#85 - Working around an issue in TRIC when scores are NaN

Pull Request - State: closed - Opened by bretttully almost 7 years ago - 1 comment

#84 - [FIX] fix overflow error on Windows

Pull Request - State: closed - Opened by hroest almost 7 years ago

#83 - Cannot run spectrast2tsv.py

Issue - State: closed - Opened by Arthfael almost 7 years ago - 8 comments

#82 - [FIX] exception fix

Pull Request - State: closed - Opened by hroest almost 7 years ago

#81 - Fix/travis test

Pull Request - State: closed - Opened by hroest almost 7 years ago

#80 - spectrast2tsv.py from Aebersold 2015 doesn't generate an output .csv or most of the programmed print messages

Issue - State: closed - Opened by stshuken almost 7 years ago - 4 comments

#79 - TRIC errors

Issue - State: closed - Opened by eseble almost 7 years ago - 3 comments

#78 - Remove mProphet.R

Pull Request - State: closed - Opened by grosenberger almost 7 years ago

#77 - mProphet File Contains Absolute Path to Lukas Hard Drive

Issue - State: closed - Opened by DarioS almost 7 years ago - 2 comments

#76 - TRIC Realignment Fails with Obscure Error Message

Issue - State: open - Opened by DarioS almost 7 years ago - 7 comments

#75 - [FIX] clarify unit

Pull Request - State: closed - Opened by hroest almost 7 years ago - 1 comment

#74 - requantAlignedValues Missing Module Graphs

Issue - State: open - Opened by DarioS almost 7 years ago

#73 - Explicitly State Units of max_rt_diff

Issue - State: closed - Opened by DarioS almost 7 years ago

#72 - Explanation of non-Administrator Install

Issue - State: closed - Opened by DarioS about 7 years ago - 2 comments

#71 - Feature/v6

Pull Request - State: closed - Opened by hroest about 7 years ago

#70 - Feature/tric cython

Pull Request - State: closed - Opened by hroest about 7 years ago - 1 comment

#69 - Feature/tapir sqmass

Pull Request - State: closed - Opened by hroest about 7 years ago

#68 - [FEATURE] scripts to convert peakview libraries to OpenSwath format

Pull Request - State: closed - Opened by hroest about 7 years ago

#67 - Euler fixes

Pull Request - State: closed - Opened by uweschmitt over 7 years ago

#66 - [TEST] fix tests

Pull Request - State: closed - Opened by hroest over 7 years ago

#65 - Support for large CSV files

Pull Request - State: closed - Opened by grosenberger over 7 years ago - 2 comments

#64 - Feature/fixdoc

Pull Request - State: closed - Opened by hroest over 7 years ago

#63 - deprecated Ward-> AgglomerativeClustering

Pull Request - State: closed - Opened by ppedrioli over 7 years ago - 1 comment

#62 - include modifications at terminus

Pull Request - State: closed - Opened by guoci almost 8 years ago - 1 comment

#61 - [DEP] switch to xlwt

Pull Request - State: closed - Opened by hroest almost 8 years ago - 1 comment

#60 - xlwt-future vs xlwt

Issue - State: closed - Opened by bgruening almost 8 years ago - 2 comments

#59 - read the file while processing file lines

Pull Request - State: closed - Opened by guoci almost 8 years ago

#58 - remove redundant linear regression

Pull Request - State: closed - Opened by guoci almost 8 years ago - 2 comments

#57 - Script/sonar

Pull Request - State: closed - Opened by hroest almost 8 years ago

#56 - Feature/lowess statsmodels update

Pull Request - State: closed - Opened by hroest about 8 years ago

#55 - Update spectrast2spectrast_irt.py

Pull Request - State: closed - Opened by guoci about 8 years ago - 5 comments

#54 - Feature/align cacher

Pull Request - State: closed - Opened by hroest about 8 years ago - 1 comment

#53 - Update spectrast2spectrast_irt.py

Pull Request - State: closed - Opened by guoci about 8 years ago - 1 comment

#52 - spectrast2tsv.py discards ~1/3 of spectra from SpectraST library

Issue - State: closed - Opened by SimionKreimer over 8 years ago - 2 comments

#51 - Fix/data file

Pull Request - State: closed - Opened by hroest over 8 years ago

#50 - [FIX] Added modifications_default.tsv to MANIFEST.in

Pull Request - State: closed - Opened by grosenberger over 8 years ago - 1 comment

#49 - [BUILD] pymzml version

Pull Request - State: closed - Opened by hroest over 8 years ago

#48 - Feature/statsmodel

Pull Request - State: closed - Opened by hroest over 8 years ago

#47 - Fix/param fixes

Pull Request - State: closed - Opened by hroest over 8 years ago