Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mskcc/smile-server issues and pull requests

#100 - NATS Messaging Library Development

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: Epic, NATS Messaging Library Development

#99 - Decide where neo4j and nats server configurations should live

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: discussion, Production Rolllout of MetaDB

#98 - Get access to delphi server

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: Production Rolllout of MetaDB

#97 - Include SampleManifest (shared package) & SampleMetadata (shared package) properties on SampleMetadata (model package)

Issue - State: closed - Opened by n1zea144 about 4 years ago - 1 comment
Labels: wontfix, z_Neo4j Persistence Library Development

#96 - updated repositories to be compatible with new edges and nodes

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago - 1 comment

#95 - GraphDB refactoring

Pull Request - State: closed - Opened by ao508 about 4 years ago

#94 - MSK Time training module [due Feb 10]

Issue - State: closed - Opened by ao508 about 4 years ago

#93 - Change IgoRequest to Request and introduce idSource & idValue properties to Request nodes

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#92 - Introducing PatientAlias nodes

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#91 - Creating HAS_METADATA edges directly to Sample nodes for all versions of metadata

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#90 - Adding sampleClass to Sample nodes

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#89 - Changing Labels of Relationships (e.g., IS_ALIAS, HAS_METADATA, HAS_SAMPLE) - removing SAMPLE_METADATA, PATIENT_NORMAL...

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#88 - Changing Labels of Nodes (e.g., Sample, SampleAlias, SampleMetadata, Patient, PatientAlias, Request)

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: z_Neo4j Persistence Library Development

#87 - Neo4j Persistence Library Development

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: Epic, z_Neo4j Persistence Library Development

#86 - Neo4j maven configuration

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: z_Neo4j Persistence Library Development

#85 - Removed PX_TO_NORMAL edge and persist SampleManifestJson

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#84 - Persist project, patient, and sampleManifestJson to Neo4J

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#83 - Publish new RequestEntity to cmo-new-request

Issue - State: closed - Opened by divyamadala30 about 4 years ago - 1 comment
Labels: MetaDB Server Development, side-quest

#81 - Persist project nodes to neo4j

Issue - State: closed - Opened by ao508 about 4 years ago

#80 - IGO new request handling updates

Pull Request - State: closed - Opened by ao508 about 4 years ago

#79 - Consistency checker tool for checking LIMS requests on a given date made it into MetaDB

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: LIMs, z_Synchronize Lims DB /MetaDB

#78 - MetaDB Sample Service implementation *testing* [ normal matching ]

Issue - State: closed - Opened by ao508 about 4 years ago - 2 comments
Labels: discussion, z_Neo4j Persistence Library Development

#77 - QC precautions, best practices

Issue - State: closed - Opened by ao508 about 4 years ago

#76 - findMatchedNormal and findPooledNormal

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#75 - added NormalSampleEntity and NormalSampleRepository

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#74 - CmoRequestEntity now extends IgoRequest

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#73 - CmoRequestEntity now extends IgoRequest

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#72 - Update IGO_NEW_REQUEST publisher to deliver "GetRequestSamplesTask" instead of simplified IgoRequest message

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: interrupt

#71 - Start pulling from LimsRest (after modeling is *complete*)

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: LIMs, z_Synchronize Lims DB /MetaDB

#70 - Meet with Lisa, David regarding LIMS data dump / backfill

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: LIMs

#69 - Demo LimsRest delivery and integration of NATS publishing to CMO MetaDB

Issue - State: closed - Opened by ao508 about 4 years ago - 4 comments
Labels: LIMs, discussion, NATS Messaging Library Development, z_Neo4j Persistence Library Development, z_Integrate NATS into LIMs

#67 - Added Project node

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#66 - Update MAF annotation / Genome Nexus docs on cbioportal

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: Pipelines/cBioPortal

#65 - Make sure normals are added to Patient nodes via edge (PX_TO_NORMAL)

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: Paused

#64 - Set up publisher for IGO_NEW_REQUEST -> publish to CMO_NEW_REQUEST

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment

#63 - Add Patient -> Normal edge [ neo4j persistence ]

Issue - State: closed - Opened by ao508 about 4 years ago

#62 - Move NATS security model effort to github.mskcc.org/cmo "cmo-nats-configuration"

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: NATS Server Administration

#61 - Represent MetaDB messages in a language neutral format

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: MetaDB Server Development

#60 - Unit tests/code coverage [cmo-metadb/persistence]

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: MetaDB Server Development

#59 - NATS security - create users with topic-specific pub/sub permissions (dot notations)

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: NATS Server Administration

#58 - Spring boot file manager validation framework

Issue - State: closed - Opened by ao508 about 4 years ago

#57 - Sprint Boot SampleMetadata validator framework

Issue - State: closed - Opened by ao508 about 4 years ago

#56 - Implement a CMO ID generation system + unit testing

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment
Labels: CMO ID Generation

#55 - Spring boot CMO ID generation framework

Issue - State: closed - Opened by ao508 about 4 years ago - 3 comments
Labels: CMO ID Generation

#54 - Spring boot CMO ID generation framework

Issue - State: closed - Opened by ao508 about 4 years ago

#53 - RequestServiceImpl and CmoRequestEntity updated

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#52 - YearEnd Review [finish by next week, week of Jan 18] Angelica

Issue - State: closed - Opened by ao508 about 4 years ago

#51 - Move neo4j dependencies to model/pom.xml

Pull Request - State: closed - Opened by ao508 about 4 years ago

#50 - Add compatible Neo4j + spring data neo4j dependencies

Pull Request - State: closed - Opened by ao508 about 4 years ago

#49 - Migrate neo4j dependencies and models from shared entities repository

Pull Request - State: closed - Opened by ao508 about 4 years ago

#48 - Refactor cmo-metadb-shared-entties

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: interrupt

#47 - Implement neo4j v6.0.2

Pull Request - State: closed - Opened by ao508 about 4 years ago

#46 - Add IGO_NEW_REQUEST service, messaging handler

Pull Request - State: closed - Opened by ao508 about 4 years ago

#45 - Investigate spring data + spring boot version compatibilities

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: interrupt

#44 - Deploy LIMS-NATS integration to development instance

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: LIMs, z_Integrate NATS into LIMs

#43 - Add Project Node (projects can have multiple requests)

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment

#42 - Get LIMS data dump from Lisa

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: LIMs

#40 - Implement an IGO_NEW_REQUEST publisher and hook it into the backend of LIMs.

Issue - State: closed - Opened by ao508 about 4 years ago - 1 comment

#39 - Add APOC UUID plugin to Neo4J on dashi-dev

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: wontfix, z_Neo4j Persistence Library Development

#38 - Update neo4j

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#37 - Implement IGO_NEW_REQUEST message service handler [NATS]

Issue - State: closed - Opened by n1zea144 about 4 years ago

#36 - LimsRest Service

Pull Request - State: closed - Opened by n1zea144 about 4 years ago
Labels: Do not merge

#35 - MetaDB - IgoRequestService Implementation [neo4j persistence]

Issue - State: closed - Opened by n1zea144 about 4 years ago

#34 - Why is SampleMetadata different from JSON in getSampleManifest?

Issue - State: closed - Opened by n1zea144 about 4 years ago

#32 - Revert "Introduction of message handling service. Some other cleanup too."

Pull Request - State: closed - Opened by n1zea144 about 4 years ago

#31 - Introduction of message handling service. Some other cleanup too.

Pull Request - State: closed - Opened by n1zea144 about 4 years ago

#30 - Add request ID (if not already present) to SampleMetadata

Issue - State: closed - Opened by ao508 about 4 years ago

#29 - integrated neo4j connection with metadb running on dashi-dev

Pull Request - State: closed - Opened by divyamadala30 about 4 years ago

#28 - Create schematic of LIMS-NATS integration

Issue - State: closed - Opened by n1zea144 about 4 years ago

#26 - Fix CircleCI config

Pull Request - State: closed - Opened by ao508 about 4 years ago

#25 - Centralize checkstyle config and CMO MetaDB dependencies

Issue - State: closed - Opened by ao508 about 4 years ago
Labels: interrupt

#24 - Properly Handle MetaDB Publishing Failures

Issue - State: closed - Opened by n1zea144 about 4 years ago - 2 comments
Labels: NATS Messaging Library Development, side-quest

#23 - Authorization to Publish to MetaDB Messaging Backbone

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: NATS Server Administration

#22 - Require Authentication to MetaDB NATS Backbone

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: NATS Server Administration

#21 - Production update of LIMs w/NATS (IGO_NEW_REQUEST) support

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: LIMs, Production Rolllout of MetaDB

#20 - Implementation of Sample Aggregator for NEW_SAMPLE_REQUEST Message Queue

Issue - State: closed - Opened by n1zea144 about 4 years ago - 1 comment
Labels: Paused

#16 - Create reusable Java based NATs Messaging Library

Issue - State: closed - Opened by n1zea144 about 4 years ago

#15 - MetaDB server running on dashi-dev

Issue - State: closed - Opened by n1zea144 about 4 years ago

#14 - MetaDB Server Development

Issue - State: open - Opened by n1zea144 about 4 years ago
Labels: Epic, MetaDB Server Development

#13 - Update NATs SampleMetadata model to support validation status

Issue - State: closed - Opened by n1zea144 about 4 years ago

#12 - Update MetaDB model to include sample metadata node w/timestamp

Issue - State: closed - Opened by n1zea144 about 4 years ago

#11 - Backfill MetaDB with LIMs database

Issue - State: closed - Opened by n1zea144 about 4 years ago - 2 comments
Labels: LIMs, z_Synchronize Lims DB /MetaDB

#10 - Extend publishing tool so we can use it to synchronize between Lims and MetaDB.

Issue - State: closed - Opened by n1zea144 about 4 years ago
Labels: LIMs, z_Synchronize Lims DB /MetaDB

#9 - Integrate NATS into LIMS Backend (Step 1)

Issue - State: closed - Opened by n1zea144 about 4 years ago - 2 comments
Labels: Epic, LIMs, z_Integrate NATS into LIMs

#8 - MetaDB - SampleService Implementation [neo4j]

Issue - State: closed - Opened by n1zea144 about 4 years ago - 1 comment

#7 - Initial thread support & shutdown hook.

Pull Request - State: closed - Opened by n1zea144 about 4 years ago - 3 comments

#6 - Fix indentation in master pom

Pull Request - State: closed - Opened by ao508 about 4 years ago

#5 - Add CircleCI to repository

Pull Request - State: closed - Opened by ao508 about 4 years ago - 1 comment

#4 - Add .circleci/config.yml

Pull Request - State: closed - Opened by ao508 about 4 years ago

#3 - Configure circleci for repo

Pull Request - State: closed - Opened by ao508 about 4 years ago

#2 - update checkstyle config

Pull Request - State: closed - Opened by ao508 about 4 years ago

#1 - Spring data neo4j impl

Pull Request - State: closed - Opened by ao508 about 4 years ago