mskcc/smile-server issues and pull requests

#1319 - Fix for correcting CMO patient IDs

Pull Request - State: closed - Opened by ao508 3 months ago

#1318 - [dashboard] Rebase the dashboard repo to support the new Neo4j version

Issue - State: open - Opened by qu8n 3 months ago

#1317 - Update docker file for java21

Pull Request - State: closed - Opened by ao508 3 months ago

#1316 - Java21

Pull Request - State: open - Opened by ao508 3 months ago

#1315 - [request filter] Publish sample updates even when sample fails sanity check

Issue - State: open - Opened by ao508 3 months ago
Labels: bug

#1314 - [request filter] Fix bug that rejects sample updates when sample validation fails

Issue - State: open - Opened by qu8n 3 months ago

#1313 - Java21

Pull Request - State: closed - Opened by ao508 3 months ago

#1312 - major cleanup - neo4j db version and java version. upgrade

Issue - State: open - Opened by ao508 3 months ago
Labels: z_Neo4j Persistence Library Development, MetaDB Server Development

#1311 - [dashboard] Display historical sample metadata

Issue - State: open - Opened by ao508 3 months ago - 1 comment
Labels: Dashboard Development

#1310 - Update the certs of SMILE dashboard (expired on Nov 6)

Issue - State: open - Opened by qu8n 3 months ago - 1 comment

#1309 - [neo4j/java update] Address any remaining deprecation warnings in SMILE server codebase

Issue - State: open - Opened by ao508 3 months ago
Labels: Paused, z_Neo4j Persistence Library Development, MetaDB Server Development

#1308 - [neo4j/java update] Confirm all web service endpoints work

Issue - State: open - Opened by ao508 3 months ago - 1 comment
Labels: z_Neo4j Persistence Library Development, MetaDB Server Development

#1307 - [neo4j/java update] Upgrade database on SMILE PROD

Issue - State: open - Opened by ao508 3 months ago - 1 comment
Labels: z_Neo4j Persistence Library Development, MetaDB Server Development

#1306 - [neo4j/java update] Test end-to-end workflow in SMILE DEV

Issue - State: open - Opened by ao508 3 months ago - 1 comment
Labels: z_Neo4j Persistence Library Development, MetaDB Server Development

#1305 - [neo4j/java update] Make new db dump from production database

Issue - State: open - Opened by ao508 3 months ago - 1 comment
Labels: z_Neo4j Persistence Library Development, MetaDB Server Development

#1304 - Update SampleMetadatas for request 16478

Issue - State: closed - Opened by qu8n 3 months ago

#1303 - DMP/CVR fetcher not publishing all clinical samples to SMILE?

Issue - State: open - Opened by ao508 3 months ago - 1 comment

#1302 - Investigate duplicate TEMPO samples from IGO

Issue - State: closed - Opened by qu8n 3 months ago

#1301 - Look into a missing request and some missing samples

Issue - State: closed - Opened by qu8n 3 months ago
Labels: PM Request

#1300 - Look into why these DMP samples aren't in SMILE

Issue - State: closed - Opened by ao508 3 months ago
Labels: interrupt, PM Request

#1299 - Migrate Requests page to use a direct Neo4j query instead of OGM

Issue - State: open - Opened by qu8n 3 months ago - 1 comment
Labels: Dashboard Development

#1298 - Migrate Cohorts page to use a direct Neo4j query instead of OGM

Issue - State: open - Opened by qu8n 3 months ago - 1 comment
Labels: Dashboard Development

#1297 - Lunch and Learn slides

Issue - State: closed - Opened by ao508 3 months ago

#1296 - [label generator] Confirm (or fix) nucleic acid counter is derived on a per-sample basis, not per-PATIENT

Issue - State: open - Opened by ao508 4 months ago
Labels: Paused

#1295 - Investigate slow-loading Patients page

Issue - State: closed - Opened by qu8n 4 months ago - 1 comment
Labels: Paused

#1294 - Microbiome - review schema, provide feedback, and schedule follow up meeting

Issue - State: closed - Opened by ao508 4 months ago

#1293 - [label generator] Check if a sample already exists with a certain CMO label before assigning label

Issue - State: open - Opened by ao508 4 months ago - 1 comment

#1292 - Migrate Patients page to use a direct Neo4j query instead of OGM

Issue - State: open - Opened by qu8n 4 months ago
Labels: Dashboard Development, READY TO DEPLOY

#1291 - Introduce pagination/infinite scrolling for the Samples page

Issue - State: closed - Opened by qu8n 4 months ago - 2 comments
Labels: Dashboard Development, DEPLOYED

#1290 - Regenerate CMO Sample ID for sample 12356_AI_31

Issue - State: closed - Opened by qu8n 4 months ago - 1 comment

#1289 - Revert additional CMO legacy labels shared by Anne Marie that weren't caught in the first round of fixes

Issue - State: open - Opened by ao508 4 months ago - 1 comment

#1288 - Tim Song - data updates (14461_U, + )

Issue - State: closed - Opened by ao508 4 months ago