mskcc/ridgeback issues and pull requests

#361 - Master to develop

Pull Request - State: closed - Opened by sivkovic 3 months ago

#360 - Release 1.35.0

Pull Request - State: closed - Opened by sivkovic 3 months ago

#359 - Handle unallocated queue

Pull Request - State: closed - Opened by nikhil 4 months ago

#358 - adding support for nfcore input/outputs

Pull Request - State: closed - Opened by buehlere 4 months ago

#357 - Master to develop

Pull Request - State: closed - Opened by sivkovic 4 months ago

#356 - Release 1.34.1

Pull Request - State: closed - Opened by sivkovic 4 months ago

#355 - Master to develop

Pull Request - State: closed - Opened by sivkovic 4 months ago

#354 - Release 1.34.0

Pull Request - State: closed - Opened by sivkovic 4 months ago

#353 - Feature/add short queue

Pull Request - State: closed - Opened by nikhil 5 months ago

#352 - Mark latest running tool as failed for a failed job

Pull Request - State: closed - Opened by nikhil 5 months ago

#351 - Update image logging

Pull Request - State: closed - Opened by nikhil 6 months ago

#350 - Release 1.33.0

Pull Request - State: closed - Opened by sivkovic 7 months ago

#349 - Skip the queue - built for Tempo BAM generation

Pull Request - State: closed - Opened by sivkovic 7 months ago

#348 - Master to develop

Pull Request - State: closed - Opened by sivkovic 7 months ago

#347 - Release 1.32.0

Pull Request - State: closed - Opened by sivkovic 7 months ago

#346 - Fix missed settings for maxCores and defaultMemory

Pull Request - State: closed - Opened by sivkovic 7 months ago

#345 - Ridgeback improvements

Pull Request - State: closed - Opened by sivkovic 7 months ago

#344 - Master to develop

Pull Request - State: closed - Opened by sivkovic 7 months ago

#343 - Release 1.31.0

Pull Request - State: closed - Opened by sivkovic 7 months ago

#342 - Set uid and gui for outputs

Pull Request - State: closed - Opened by sivkovic 8 months ago

#341 - Install requirements-toil.txt in the image and update toil version

Pull Request - State: closed - Opened by D-Pankey 8 months ago

#340 - Fix celery commands to celery version 5.2.2

Pull Request - State: closed - Opened by D-Pankey 8 months ago

#339 - Sync master and develop

Pull Request - State: closed - Opened by sivkovic 8 months ago

#338 - Release/1.30.0

Pull Request - State: closed - Opened by sivkovic 8 months ago

#337 - Bump black from 22.3.0 to 24.3.0

Pull Request - State: open - Opened by dependabot[bot] 11 months ago
Labels: dependencies

#336 - Create github-actions.yml

Pull Request - State: closed - Opened by D-Pankey about 1 year ago

#335 - Bump django from 2.2.24 to 3.2.24

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#334 - Fix containers

Pull Request - State: closed - Opened by sivkovic about 1 year ago

#333 - Fix singularity images

Pull Request - State: closed - Opened by sivkovic about 1 year ago

#332 - Release/1.30.0

Pull Request - State: closed - Opened by sivkovic about 1 year ago

#331 - Feature/add tool level walltime

Pull Request - State: closed - Opened by nikhil about 1 year ago

#330 - Add hanging job detection

Pull Request - State: closed - Opened by nikhil about 1 year ago

#329 - Version bump

Pull Request - State: closed - Opened by nikhil about 1 year ago

#328 - Update toil_jobsubmitter.py

Pull Request - State: closed - Opened by buehlere over 1 year ago

#327 - Master to Develop

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#326 - Hotfix/fix permission set

Pull Request - State: closed - Opened by nikhil over 1 year ago

#325 - Make SLA not required

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#324 - Preserve work dir

Pull Request - State: closed - Opened by nikhil over 1 year ago

#323 - Backport master to develop

Pull Request - State: closed - Opened by nikhil over 1 year ago

#322 - Feature/dd trace develop

Pull Request - State: closed - Opened by D-Pankey over 1 year ago

#321 - Add CI and CD

Pull Request - State: closed - Opened by nikhil over 1 year ago

#320 - Release 1.29.0

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#319 - Master to develop

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#318 - Fix permissions

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#317 - Add outputs of the pipeline to output.json instead of inputs

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#316 - Release 1.28.0

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#315 - Feature/fix toil commandline test

Pull Request - State: closed - Opened by nikhil over 1 year ago

#314 - Update master from develop

Pull Request - State: closed - Opened by nikhil over 1 year ago

#313 - Fix permissions fix

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#312 - adding span instrumentation

Pull Request - State: closed - Opened by D-Pankey over 1 year ago

#311 - updat ddtrace branch

Pull Request - State: closed - Opened by D-Pankey over 1 year ago

#310 - Release/1.27.0

Pull Request - State: closed - Opened by allanbolipata over 1 year ago

#309 - Fix setting permissions for files and directories

Pull Request - State: closed - Opened by sivkovic over 1 year ago

#308 - Sync master and dev

Pull Request - State: closed - Opened by allanbolipata over 1 year ago

#307 - Update toil_jobsubmitter.py

Pull Request - State: closed - Opened by buehlere over 1 year ago

#306 - Add ACCESS TOIL hotfix

Pull Request - State: closed - Opened by nikhil over 1 year ago

#305 - Hotfix/access submitter update

Pull Request - State: closed - Opened by buehlere over 1 year ago

#304 - Feature/githubactions

Pull Request - State: open - Opened by D-Pankey almost 2 years ago
Labels: do not merge

#303 - Release 1.27.0

Pull Request - State: closed - Opened by nikhil almost 2 years ago

#302 - Add run_info line at the beginning of file

Pull Request - State: closed - Opened by sivkovic almost 2 years ago

#301 - Add additional info in .run_info

Pull Request - State: closed - Opened by sivkovic almost 2 years ago

#300 - Release 1.26.0

Pull Request - State: closed - Opened by nikhil almost 2 years ago

#299 - Version bump

Pull Request - State: closed - Opened by nikhil almost 2 years ago

#298 - Added TOIL parameter that reduces non-deterministic failures

Pull Request - State: closed - Opened by nikhil almost 2 years ago

#297 - Dump input files for nextflow

Pull Request - State: closed - Opened by sivkovic almost 2 years ago

#296 - adding span instrumentation

Pull Request - State: closed - Opened by D-Pankey almost 2 years ago
Labels: do not merge