Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mskcc/ngs-filters issues and pull requests

#28 - Using tool on targeted gene panel sequencing data

Issue - State: open - Opened by annahoge almost 4 years ago

#27 - Tweaks for normal-panel filter

Issue - State: open - Opened by ckandoth about 5 years ago

#26 - Citing your NGS filtering method

Issue - State: open - Opened by cgab-ncc about 5 years ago

#24 - maf_fillout.py bug on full MAF

Issue - State: closed - Opened by evanbiederstedt almost 6 years ago - 1 comment

#23 - Better ngs-filters in many ways

Pull Request - State: closed - Opened by ckandoth about 7 years ago - 1 comment

#22 - refactor tag_hotspots for speed/mem; fix ref alleles in hotspot list

Pull Request - State: closed - Opened by ckandoth about 7 years ago - 7 comments

#21 - Removing NA

Pull Request - State: closed - Opened by rhshah over 7 years ago
Labels: bug, enhancement

#20 - Fix for ColClasses and updating ReadMe

Pull Request - State: closed - Opened by rhshah over 7 years ago

#19 - Use absolute path for .git-commit-hash

Pull Request - State: closed - Opened by hisplan over 7 years ago

#18 - Better handling of git commit hash when ngs-filters is running inside a container

Pull Request - State: closed - Opened by hisplan over 7 years ago
Labels: enhancement

#17 - Add scripts that install dependencies

Pull Request - State: closed - Opened by hisplan over 7 years ago
Labels: enhancement

#17 - Add scripts that install dependencies

Pull Request - State: closed - Opened by hisplan over 7 years ago
Labels: enhancement

#16 - Removing BioStrings

Pull Request - State: closed - Opened by rhshah over 7 years ago

#15 - Update and rename run_wes-filters.py to run_ngs-filters.py

Pull Request - State: closed - Opened by rhshah over 7 years ago

#14 - add test file to current PR

Pull Request - State: closed - Opened by lordzappo over 7 years ago

#13 - jenkins test, ignore this pr

Pull Request - State: closed - Opened by lordzappo over 7 years ago - 3 comments

#12 - first commit of testing script

Pull Request - State: closed - Opened by lordzappo over 7 years ago

#11 - Wrapper to run wes filters

Pull Request - State: closed - Opened by rhshah over 7 years ago - 7 comments
Labels: bug, enhancement

#10 - Merge 170519

Pull Request - State: closed - Opened by soccin over 7 years ago
Labels: enhancement

#9 - Hotspot and dmp filter

Pull Request - State: closed - Opened by rhshah over 7 years ago - 1 comment

#8 - typo fix

Pull Request - State: closed - Opened by lordzappo over 7 years ago

#7 - now with more cloud portability

Pull Request - State: closed - Opened by lordzappo over 7 years ago - 2 comments

#6 - Make repo public?

Issue - State: closed - Opened by ckandoth over 8 years ago - 2 comments
Labels: question

#5 - filter_low_conf.R

Issue - State: closed - Opened by md09 over 8 years ago - 1 comment

#4 - NA in all empty columns

Issue - State: closed - Opened by kk988 over 8 years ago - 1 comment

#3 - Add mappability to blacklist filter

Issue - State: closed - Opened by kpjonsson over 8 years ago - 1 comment

#2 - Common_variant filter not necessary if maf2maf

Issue - State: closed - Opened by kpjonsson over 8 years ago - 2 comments

#1 - Add filter reason to FILTER column

Issue - State: closed - Opened by kpjonsson over 8 years ago