Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mskcc/igo-demux issues and pull requests

#83 - Update recipe

Pull Request - State: closed - Opened by CuijieLu 9 months ago

#83 - Update recipe

Pull Request - State: closed - Opened by CuijieLu 9 months ago

#82 - add reversed barcode option to barcode lookup

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#82 - add reversed barcode option to barcode lookup

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#81 - Cellranger update for spatial and multi

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#81 - Cellranger update for spatial and multi

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#80 - added fix and unit test

Pull Request - State: closed - Opened by dmcmanam over 1 year ago

#79 - Add Cellranger multi function

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#79 - Add Cellranger multi function

Pull Request - State: closed - Opened by CuijieLu over 1 year ago

#78 - replace upload_stats.sh with python

Pull Request - State: closed - Opened by CuijieLu almost 2 years ago - 1 comment

#78 - replace upload_stats.sh with python

Pull Request - State: closed - Opened by CuijieLu almost 2 years ago - 1 comment

#77 - Add dlp summary

Pull Request - State: closed - Opened by CuijieLu almost 2 years ago

#77 - Add dlp summary

Pull Request - State: closed - Opened by CuijieLu almost 2 years ago

#76 - add amelie

Pull Request - State: closed - Opened by dmcmanam about 2 years ago

#75 - when all SI barcodes sample sheet convert them to real barcodes

Pull Request - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#75 - when all SI barcodes sample sheet convert them to real barcodes

Pull Request - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#73 - Evaluate and implement DRAGEN Downsampling for PED-PEG

Issue - State: open - Opened by dmcmanam over 2 years ago

#73 - Evaluate and implement DRAGEN Downsampling for PED-PEG

Issue - State: open - Opened by dmcmanam over 2 years ago

#72 - Automate the 10x Visium pipeline inputs and pipeline

Issue - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#72 - Automate the 10x Visium pipeline inputs and pipeline

Issue - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#71 - Compare DRAGEN Methylation Pipeline to nf-core/methylseq

Issue - State: open - Opened by dmcmanam over 2 years ago

#71 - Compare DRAGEN Methylation Pipeline to nf-core/methylseq

Issue - State: open - Opened by dmcmanam over 2 years ago

#70 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#70 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#69 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#69 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#68 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#68 - Stats by project

Pull Request - State: closed - Opened by darrelln32 over 2 years ago

#67 - update

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#67 - update

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#66 - add tcrseq manifest

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#66 - add tcrseq manifest

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#65 - add more recipe to pipeline deliver dag

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#65 - add more recipe to pipeline deliver dag

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#64 - Update python-app.yml

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#64 - Update python-app.yml

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#63 - add txt conversion for 10Xatac run

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#63 - add txt conversion for 10Xatac run

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#62 - performance improvement

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#62 - performance improvement

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#61 - Update demux_run_dag.py

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#61 - Update demux_run_dag.py

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#60 - updated 2nd regex

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#60 - updated 2nd regex

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#59 - bug fix

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#59 - bug fix

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#58 - get the correct IGO id from WGS .bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#58 - get the correct IGO id from WGS .bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#57 - email content update

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#56 - Run WGS on all 3 DRAGEN nodes

Pull Request - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#55 - add logging and update fingerprinting

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#55 - add logging and update fingerprinting

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#54 - Improve end-to-end Airflow Pipeline Testing for IMPACT/RNASeq/WGS

Issue - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#54 - Improve end-to-end Airflow Pipeline Testing for IMPACT/RNASeq/WGS

Issue - State: closed - Opened by dmcmanam over 2 years ago - 1 comment

#53 - changed paths to current DRAGEN human reference

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#52 - Automate fp and email

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#51 - Move failed fastqs

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#51 - Move failed fastqs

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#50 - Build converted si samplesheet

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#50 - Build converted si samplesheet

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#49 - Deliver cellranger

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#49 - Deliver cellranger

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#48 - Update CopyIlluminaReports.sh

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#48 - Update CopyIlluminaReports.sh

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#47 - Deliver rna seq bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#47 - Deliver rna seq bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#46 - cellranger for scri

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#46 - cellranger for scri

Pull Request - State: closed - Opened by CuijieLu over 2 years ago

#45 - Deliver rna seq bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#45 - Deliver rna seq bams

Pull Request - State: closed - Opened by dmcmanam over 2 years ago

#44 - Generate RNASeq Delivery .bams

Issue - State: closed - Opened by dmcmanam over 2 years ago

#43 - Remove 'Sample_Name' column from sample sheet

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#43 - Remove 'Sample_Name' column from sample sheet

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#42 - Fully Automate Fingerprinting

Issue - State: closed - Opened by dmcmanam almost 3 years ago

#42 - Fully Automate Fingerprinting

Issue - State: closed - Opened by dmcmanam almost 3 years ago

#41 - Change IMPACT baits file name

Issue - State: closed - Opened by dmcmanam almost 3 years ago

#41 - Change IMPACT baits file name

Issue - State: closed - Opened by dmcmanam almost 3 years ago

#40 - yaml file generation bug fix

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#40 - yaml file generation bug fix

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#39 - Add files via upload

Pull Request - State: closed - Opened by darrelln32 almost 3 years ago

#39 - Add files via upload

Pull Request - State: closed - Opened by darrelln32 almost 3 years ago

#38 - recipe bug fixed

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#38 - recipe bug fixed

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#37 - Add alignment and config

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#37 - Add alignment and config

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#36 - Add files via upload

Pull Request - State: closed - Opened by darrelln32 almost 3 years ago

#36 - Add files via upload

Pull Request - State: closed - Opened by darrelln32 almost 3 years ago

#35 - updated cat command for fastq.gz files

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#33 - Enhancement/cl/tenxpipeline

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#33 - Enhancement/cl/tenxpipeline

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#32 - Enhancement/fm/fingerprinting test adjustments

Pull Request - State: closed - Opened by FahimehMirhaj almost 3 years ago

#32 - Enhancement/fm/fingerprinting test adjustments

Pull Request - State: closed - Opened by FahimehMirhaj almost 3 years ago

#31 - Filter dragen wgs commands

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#31 - Filter dragen wgs commands

Pull Request - State: closed - Opened by dmcmanam almost 3 years ago

#30 - Enhancement/cl/tenxpipeline

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago

#30 - Enhancement/cl/tenxpipeline

Pull Request - State: closed - Opened by CuijieLu almost 3 years ago