Ecosyste.ms: Issues

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GitHub / mskcc/collect-qc issues and pull requests

#35 - Updated function name in README.md

Pull Request - State: closed - Opened by nikhil over 1 year ago

#34 - Docs/readme setup instructions

Pull Request - State: closed - Opened by bfarahdel over 1 year ago - 1 comment

#33 - Update readme documentation

Issue - State: closed - Opened by nikhil over 1 year ago

#32 - Add an example config.yaml

Issue - State: closed - Opened by nikhil over 1 year ago

#31 - Feature/multiqc integration

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#30 - Presentation for project

Issue - State: closed - Opened by nikhil over 1 year ago - 1 comment

#29 - Add multiqc

Issue - State: closed - Opened by nikhil over 1 year ago

#28 - Feature/gcbias

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#27 - Add function to handle gcbias metric

Issue - State: closed - Opened by nikhil over 1 year ago - 6 comments

#26 - Feature/concordance

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#25 - Add concordance plot

Issue - State: closed - Opened by nikhil over 1 year ago

#24 - Add Concordance metric

Issue - State: closed - Opened by nikhil over 1 year ago - 4 comments

#23 - Feature/plots/mean target coverage

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#22 - Feature/qc summary

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#21 - Testing/peak analysis

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#20 - Add testing for insert_size

Issue - State: closed - Opened by nikhil over 1 year ago

#19 - Add Github actions

Issue - State: closed - Opened by nikhil over 1 year ago

#18 - Add plot for mean target coverage

Issue - State: closed - Opened by nikhil over 1 year ago

#17 - Testing/mean target coverage

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#16 - Refactor config.yaml

Issue - State: closed - Opened by nikhil over 1 year ago

#15 - Text output for collect-qc

Issue - State: closed - Opened by nikhil over 1 year ago - 1 comment

#14 - Feature/insert size plot

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#14 - Feature/insert size plot

Pull Request - State: closed - Opened by bfarahdel over 1 year ago

#13 - Line chart for insertsize metrics

Issue - State: closed - Opened by nikhil almost 2 years ago

#12 - hsmetrics mean target coverage

Pull Request - State: closed - Opened by bfarahdel almost 2 years ago - 1 comment

#11 - New coverage function

Issue - State: closed - Opened by nikhil almost 2 years ago

#10 - Insert size metric feature added

Pull Request - State: closed - Opened by bfarahdel almost 2 years ago - 1 comment

#9 - Import insertsize metrics

Issue - State: closed - Opened by nikhil almost 2 years ago

#8 - Get QC metric test data

Issue - State: closed - Opened by nikhil almost 2 years ago

#7 - Display metric summary using multiple types of metrics from Picard

Issue - State: closed - Opened by nikhil almost 2 years ago

#6 - Display metric summary using one metric file from Picard tools

Issue - State: closed - Opened by nikhil almost 2 years ago

#5 - Tool agnostic function to load metric files

Issue - State: closed - Opened by nikhil almost 2 years ago - 2 comments

#4 - Continuous testing: Integrate with travis-ci

Issue - State: closed - Opened by nikhil almost 2 years ago - 1 comment

#3 - Add python testing module

Issue - State: closed - Opened by nikhil almost 2 years ago - 1 comment

#2 - Containerize application

Issue - State: closed - Opened by nikhil almost 2 years ago

#1 - Create a design doc

Issue - State: closed - Opened by nikhil almost 2 years ago