Ecosyste.ms: Issues

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GitHub / msk-access/sequence_qc issues and pull requests

#25 - Bump scipy from 1.5.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#24 - Master to develop

Pull Request - State: closed - Opened by rhshah over 1 year ago

#23 - Feature/fix suscript error

Pull Request - State: closed - Opened by buehlere over 1 year ago

#22 - Bump wheel from 0.33.6 to 0.38.1

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#21 - Bump pip from 19.2.3 to 21.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#20 - catch and log error

Issue - State: open - Opened by ionox0 over 3 years ago - 1 comment

#19 - check noise precision

Issue - State: open - Opened by ionox0 over 3 years ago - 1 comment

#18 - Tlen calculations

Pull Request - State: closed - Opened by ionox0 over 3 years ago

#17 - new histogram for average TLEN at noisy positions

Pull Request - State: closed - Opened by ionox0 over 3 years ago - 2 comments

#16 - Add Inset size calculation metrics

Issue - State: open - Opened by rhshah over 3 years ago - 2 comments
Labels: enhancement

#15 - Add cicd

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 2 comments

#14 - consistency with biometrics package

Issue - State: open - Opened by ionox0 almost 4 years ago - 4 comments
Labels: enhancement

#13 - [ImgBot] Optimize images

Pull Request - State: closed - Opened by imgbot[bot] almost 4 years ago

#12 - Some Modification base on Mike's email

Issue - State: closed - Opened by rhshah about 4 years ago - 1 comment
Labels: enhancement

#10 - Output pdf plot for "top noisy positions"

Issue - State: closed - Opened by ionox0 over 4 years ago

#9 - Include noise from heterozygous / tri-allelic sites

Issue - State: open - Opened by ionox0 over 4 years ago

#8 - investigate drop off in noise around .00039

Issue - State: closed - Opened by ionox0 over 4 years ago - 1 comment

#7 - Noise output file format

Issue - State: closed - Opened by ionox0 over 4 years ago - 2 comments

#6 - multi-sample mode

Issue - State: closed - Opened by ionox0 over 4 years ago
Labels: enhancement

#5 - Exploring Alfred and Fastp, if Picard takes too much time.

Issue - State: closed - Opened by rhshah over 4 years ago - 2 comments
Labels: enhancement

#4 - set up travis testing

Issue - State: closed - Opened by ionox0 over 4 years ago - 1 comment
Labels: enhancement

#3 - add documentation / readme

Issue - State: closed - Opened by ionox0 over 4 years ago - 5 comments
Labels: documentation

#2 - noise calculation gives higher estimate than old method

Issue - State: closed - Opened by ionox0 over 4 years ago - 4 comments
Labels: enhancement

#1 - Template repository to host sequence-based quality control scripts as a package.

Issue - State: closed - Opened by rhshah almost 5 years ago
Labels: enhancement