Ecosyste.ms: Issues

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GitHub / msk-access/postprocessing_variant_calls issues and pull requests

#46 - Release/0.2.5

Pull Request - State: closed - Opened by buehlere 16 days ago

#45 - Merge tag '0.2.4' into develop

Pull Request - State: closed - Opened by buehlere 16 days ago

#44 - Mutect2 filtering command

Pull Request - State: closed - Opened by rnaidu 17 days ago

#42 - cmoch filter

Pull Request - State: closed - Opened by karthigayini 2 months ago

#41 - Access Filters + Tag by Variant Classification pv commands

Pull Request - State: closed - Opened by rnaidu 3 months ago - 1 comment

#40 - converting chr to type ste

Pull Request - State: closed - Opened by karthigayini 3 months ago

#39 - pv maf concat - remove the id column from the output

Issue - State: open - Opened by rhshah 4 months ago
Labels: enhancement

#38 - pv maf concat - header file needs to be in csv format.

Issue - State: open - Opened by rhshah 4 months ago
Labels: enhancement

#37 - Feature/update docs

Pull Request - State: closed - Opened by buehlere 5 months ago

#36 - Hotfix/readme update

Pull Request - State: closed - Opened by buehlere 6 months ago

#35 - Hotfix/sync document

Pull Request - State: closed - Opened by buehlere 6 months ago

#34 - Delete docs/cli.md

Pull Request - State: closed - Opened by buehlere 6 months ago

#33 - Delete docs/CLI.md

Pull Request - State: closed - Opened by buehlere 6 months ago

#32 - Feature/sync docs

Pull Request - State: closed - Opened by buehlere 6 months ago

#31 - Feature/remove variant by annot

Pull Request - State: closed - Opened by rnaidu 6 months ago

#30 - Feature/fix concat

Pull Request - State: closed - Opened by buehlere 7 months ago

#29 - Feature/traceback concat

Pull Request - State: closed - Opened by buehlere 7 months ago

#28 - Feature/contribution

Pull Request - State: closed - Opened by buehlere 7 months ago

#27 - Feature/mutect filter (Adding command for mutect filter)

Pull Request - State: closed - Opened by rnaidu 8 months ago - 2 comments

#26 - tag commands

Pull Request - State: closed - Opened by karthigayini 12 months ago

#25 - Feature/mafbymaf

Pull Request - State: closed - Opened by buehlere about 1 year ago

#24 - Feature/update subset

Pull Request - State: closed - Opened by buehlere about 1 year ago

#23 - Adding Sample Name / Caller name

Issue - State: open - Opened by karthigayini about 1 year ago

#22 - Maf subset

Pull Request - State: closed - Opened by carmelinacharalambous over 1 year ago

#21 - Update pybed_intersect.py

Pull Request - State: closed - Opened by buehlere over 1 year ago

#20 - Develop

Pull Request - State: closed - Opened by buehlere over 1 year ago

#19 - changing the column values

Pull Request - State: closed - Opened by karthigayini over 1 year ago - 1 comment

#18 - sep to tab delimited

Pull Request - State: closed - Opened by karthigayini over 1 year ago

#17 - updating the output extension from csv to maf

Pull Request - State: closed - Opened by karthigayini over 1 year ago

#16 - Feature/combine maftools

Pull Request - State: closed - Opened by buehlere over 1 year ago

#15 - Mafbybed

Pull Request - State: closed - Opened by buehlere over 1 year ago

#14 - Maf concat

Pull Request - State: closed - Opened by carmelinacharalambous over 1 year ago - 9 comments

#13 - Mafmaf

Pull Request - State: closed - Opened by karthigayini over 1 year ago

#12 - maf concat

Pull Request - State: closed - Opened by carmelinacharalambous almost 2 years ago - 3 comments

#11 - Add CodeQL workflow for GitHub code scanning

Pull Request - State: open - Opened by lgtm-com[bot] almost 2 years ago

#10 - reorganizing structure for pip install

Pull Request - State: closed - Opened by buehlere over 2 years ago - 3 comments

#9 - Git Action Fix

Pull Request - State: closed - Opened by buehlere over 2 years ago

#8 - Pulling from Main

Pull Request - State: closed - Opened by rhshah over 2 years ago

#7 - Refactoring Project Layout

Pull Request - State: closed - Opened by buehlere over 2 years ago

#6 - tco

Issue - State: open - Opened by karthigayini over 2 years ago

#5 - Pip Install for PyVCF

Issue - State: closed - Opened by buehlere over 2 years ago

#4 - Document Vardict Filtering

Issue - State: open - Opened by buehlere over 2 years ago

#3 - Feature/add inputs

Pull Request - State: closed - Opened by buehlere over 2 years ago - 2 comments

#2 - Feature/add inputs

Pull Request - State: closed - Opened by buehlere over 2 years ago - 11 comments

#1 - Adding things

Pull Request - State: closed - Opened by rhshah over 2 years ago