Ecosyste.ms: Issues

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GitHub / msk-access/biometrics issues and pull requests

#54 - Update publish_docker.yml

Pull Request - State: open - Opened by rhshah 4 months ago

#53 - Hotfix/type error fix

Pull Request - State: closed - Opened by binfyun 6 months ago
Labels: bug

#52 - Add files via upload

Pull Request - State: closed - Opened by binfyun 6 months ago
Labels: bug

#51 - deal with Non-ASCII characters

Pull Request - State: closed - Opened by karthigayini 6 months ago - 1 comment

#49 - CH Updates

Pull Request - State: closed - Opened by buehlere about 2 years ago

#48 - Merging from Master

Pull Request - State: closed - Opened by rhshah about 2 years ago

#47 - Hotfix error single sample

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#46 - issues with handling one sample at low coverage

Issue - State: closed - Opened by murphycj2 over 3 years ago
Labels: bug

#45 - Hotfix sexmismatch nan noregions

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#44 - Develop

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 1 comment

#43 - Small improvements

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 2 comments

#42 - now multithreads

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#41 - extract tool not properly multi-threading

Issue - State: closed - Opened by murphycj2 over 3 years ago - 1 comment
Labels: bug

#40 - rename extraction files from .pk to .pickle

Issue - State: closed - Opened by murphycj2 over 3 years ago - 1 comment
Labels: enhancement

#39 - Hotfix minor cont plot

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#38 - Hotfix nonascii qual

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 1 comment

#37 - Hotfix no fail single sample

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 1 comment

#36 - Hotfix input issue

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#35 - Develop

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#34 - Add docker

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#33 - plotting tests, bug in genotype heatmap,

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#32 - Hotfix if sample group

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#31 - Develop

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#30 - github action for docker build/release

Issue - State: closed - Opened by murphycj2 over 3 years ago - 1 comment
Labels: enhancement

#29 - Add docker

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#28 - Flexible inputs

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#27 - make database arg not required

Issue - State: closed - Opened by murphycj2 over 3 years ago - 1 comment
Labels: enhancement

#26 - more flexible inputs for CLI

Issue - State: closed - Opened by murphycj2 over 3 years ago
Labels: enhancement

#25 - optionally output file for each sample containing its pairwise comparisons

Issue - State: open - Opened by murphycj2 over 3 years ago
Labels: enhancement

#24 - add column for predicted group

Issue - State: closed - Opened by murphycj2 over 3 years ago - 1 comment
Labels: enhancement

#23 - parallelize loading of extraction results

Issue - State: open - Opened by murphycj2 over 3 years ago
Labels: enhancement

#22 - compute minor/major contamination during extraction using reasonable defaults

Issue - State: open - Opened by murphycj2 over 3 years ago
Labels: enhancement

#21 - don't automatically cluster all the database samples when using genotype tool

Issue - State: open - Opened by murphycj2 over 3 years ago
Labels: enhancement

#20 - when clustering input, also include any samples that match in the database

Issue - State: open - Opened by murphycj2 over 3 years ago
Labels: enhancement

#19 - Develop

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 1 comment

#18 - one source of truth for version

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#17 - Conda and GitHub action releases

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#16 - Add action

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#15 - Update minor cont plot

Pull Request - State: closed - Opened by murphycj2 over 3 years ago

#14 - Predict group functionality

Pull Request - State: closed - Opened by murphycj2 over 3 years ago - 2 comments

#13 - Testing how Multiple Assays can be run for Fingerprint analysis

Issue - State: closed - Opened by rhshah almost 4 years ago
Labels: enhancement

#12 - Test Duplex Minor Contamination

Issue - State: closed - Opened by rhshah almost 4 years ago
Labels: enhancement

#11 - Automation of Inference for Unexpected Matches and Mismatches

Issue - State: closed - Opened by rhshah almost 4 years ago
Labels: enhancement

#10 - Inference based on Unexpected Match and Unexpected Mismatch

Issue - State: closed - Opened by rhshah almost 4 years ago
Labels: duplicate

#9 - Minor Contamination Plots (Duplex and Unfiltered)

Issue - State: closed - Opened by rhshah almost 4 years ago - 1 comment
Labels: enhancement

#8 - Develop into master

Pull Request - State: closed - Opened by murphycj2 almost 4 years ago - 1 comment

#7 - Bug fixes

Pull Request - State: closed - Opened by murphycj2 almost 4 years ago

#6 - Doc fixes

Pull Request - State: closed - Opened by murphycj2 almost 4 years ago

#5 - First working version

Pull Request - State: closed - Opened by murphycj2 almost 4 years ago - 2 comments

#4 - Sex Mismatch

Issue - State: closed - Opened by rhshah almost 5 years ago
Labels: enhancement

#3 - Major Contamination

Issue - State: closed - Opened by rhshah almost 5 years ago
Labels: enhancement

#2 - Minor Contamination

Issue - State: closed - Opened by rhshah almost 5 years ago
Labels: enhancement

#1 - Genotyping

Issue - State: closed - Opened by rhshah almost 5 years ago
Labels: enhancement