Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ms609/TreeTools issues and pull requests
#165 - Binary decomposition of additive characters
Pull Request -
State: closed - Opened by ms609 about 1 month ago
- 1 comment
#164 - Update to Bootstrap 5
Issue -
State: open - Opened by ms609 about 1 month ago
#163 - v1.12.0
Pull Request -
State: closed - Opened by ms609 2 months ago
- 1 comment
#162 - TopologyOnly()
Pull Request -
State: closed - Opened by ms609 2 months ago
- 1 comment
#161 - Optimise `MatchNodes()`
Issue -
State: open - Opened by ms609 2 months ago
#160 - Robust, Universal tree balance
Pull Request -
State: closed - Opened by ms609 4 months ago
#159 - Use log factorials to allow TCI to be calculated for larger trees
Pull Request -
State: closed - Opened by ms609 4 months ago
#158 - TCIContext(tree)$maximum overflow
Issue -
State: closed - Opened by RussellGarwood 4 months ago
- 3 comments
#157 - Root tree on random edge
Pull Request -
State: closed - Opened by ms609 6 months ago
- 1 comment
#156 - Replace `.C` with `.Call`
Pull Request -
State: closed - Opened by ms609 6 months ago
- 1 comment
#155 - Remove `ape_node_depth`
Issue -
State: closed - Opened by ms609 6 months ago
#154 - tree$node.label support
Pull Request -
State: closed - Opened by ms609 6 months ago
- 1 comment
#153 - DescendantEdges → C++
Pull Request -
State: closed - Opened by ms609 6 months ago
- 1 comment
#152 - Subtree() handles node labels
Pull Request -
State: closed - Opened by ms609 6 months ago
- 1 comment
#151 - Node numbers in `CollapseNode()`
Pull Request -
State: closed - Opened by ms609 6 months ago
#150 - Handle node labels in `AddTip()`
Pull Request -
State: closed - Opened by ms609 6 months ago
#149 - If tree has defined node.labels AddTips() will not change them
Issue -
State: closed - Opened by stitam 7 months ago
- 2 comments
#148 - str method for relevant classes
Issue -
State: closed - Opened by ms609 7 months ago
- 1 comment
#147 - Simulation of Birth-Death trees
Issue -
State: open - Opened by ms609 7 months ago
#146 - YuleTree()
Pull Request -
State: closed - Opened by ms609 7 months ago
- 1 comment
#145 - Random Trees don't match balance
Issue -
State: closed - Opened by ms609 7 months ago
- 1 comment
#144 - DropTip will not remove tip on tree
Issue -
State: closed - Opened by theo-allnutt-bioinformatics 11 months ago
- 2 comments
#143 - Will not install on Rstudio
Issue -
State: closed - Opened by theo-allnutt-bioinformatics 11 months ago
- 2 comments
#142 - as.TreeNumber not identifying unique topologies
Issue -
State: closed - Opened by jblandis 12 months ago
- 4 comments
#141 - Error: This many leaves cannot be supported
Issue -
State: open - Opened by noranekonobokkusu about 1 year ago
- 13 comments
Labels: help wanted
#140 - Custom directory for caching
Issue -
State: closed - Opened by stitam about 1 year ago
- 3 comments
#139 - using WriteTNTcharacters() with continuous matrix
Issue -
State: closed - Opened by jc17659 about 1 year ago
- 5 comments
#138 - Read MrBayes trees
Pull Request -
State: closed - Opened by ms609 about 1 year ago
#137 - Tip timed tree
Pull Request -
State: closed - Opened by ms609 over 1 year ago
#136 - Replace `.C` with `.Call`
Issue -
State: closed - Opened by ms609 over 1 year ago
#135 - as.matrix
Pull Request -
State: closed - Opened by ms609 almost 2 years ago
- 1 comment
#134 - GH Actions templates
Issue -
State: open - Opened by ms609 almost 2 years ago
#133 - Unsupported NEXUS file
Issue -
State: closed - Opened by EJchemoiwa about 2 years ago
- 1 comment
#132 - check for na values
Pull Request -
State: closed - Opened by ms609 about 2 years ago
- 4 comments
#131 - Support `ttags` in TNT trees
Pull Request -
State: closed - Opened by ms609 about 2 years ago
- 2 comments
#130 - Consensus of many trees
Pull Request -
State: closed - Opened by ms609 about 2 years ago
- 1 comment
#129 - demo()
Issue -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#128 - Quality of a dataset
Issue -
State: open - Opened by ms609 over 2 years ago
#127 - `ClusterTable` memory requirements
Issue -
State: closed - Opened by ms609 over 2 years ago
#126 - Multiline TNT
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#125 - NexusTokens() shiny interaction
Issue -
State: closed - Opened by ms609 over 2 years ago
#124 - v1.7.2: Lapse Preorder
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#123 - Tree balance index
Issue -
State: open - Opened by ms609 over 2 years ago
#122 - R implementation of `ClusterTable` class
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#121 - `as.MixedBase()` hangs (in `sort.multiPhylo()`)
Issue -
State: closed - Opened by ms609 over 2 years ago
Labels: bug
#120 - Edge length issues
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#119 - v1.7.0
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#118 - C++ split manipulation
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#117 - `MSTEdges()` fails gracefully on bad input
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#116 - Rdpack nobrackets
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#115 - Reference formatting, once Rdpack > 2.1.3
Issue -
State: closed - Opened by ms609 over 2 years ago
#114 - Fix `DropTip()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#113 - `CollapseNode()` performance
Issue -
State: open - Opened by ms609 over 2 years ago
#112 - Unrooted trees in `KeptVerts()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#111 - `KeptPaths()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#110 - Asan diagnostics
Pull Request -
State: open - Opened by ms609 over 2 years ago
#109 - Use preorder to post-order
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#108 - Diagnose ASAN failure
Pull Request -
State: open - Opened by ms609 over 2 years ago
- 1 comment
#107 - Weighted postorder
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#106 - Sort weighted trees with SortTree()
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#105 - Support edge lengths in `Preorder()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#104 - MSTEdges() explodes if sent invalid input
Issue -
State: closed - Opened by ms609 over 2 years ago
#103 - SortTree by tip labels
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#102 - Drop `drop_tip()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#101 - Use Rcpp light
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#100 - Deprecate `EnforceOutgroup()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#99 - TNT multiline support
Issue -
State: open - Opened by ms609 over 2 years ago
#98 - Convert between TreeNumber and MixedBase
Issue -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#97 - Handle zero-split trees
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#96 - Don't import `reorder.phylo()`
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#95 - Make references inline
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#94 - 1.6.0.9001
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#93 - "Preorder" classification
Issue -
State: open - Opened by ms609 over 2 years ago
#92 - Refactor DropTip()
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 1 comment
#91 - DropTip(): retain (un)rootedness
Pull Request -
State: closed - Opened by ms609 over 2 years ago
- 2 comments
#90 - Fix RootTree bug & use tabulate()
Pull Request -
State: closed - Opened by ms609 over 2 years ago
#89 - Support edge lengths in `UnrootTree()`
Issue -
State: closed - Opened by marwa38 almost 3 years ago
- 2 comments
#88 - Format of the tree?
Issue -
State: closed - Opened by marwa38 almost 3 years ago
- 2 comments
#87 - Remove phangorn dependency
Pull Request -
State: closed - Opened by ms609 almost 3 years ago
#86 - v1.5.1
Pull Request -
State: closed - Opened by ms609 almost 3 years ago
- 1 comment
#85 - Implement `sort.multiPhylo()`
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#84 - Sort trees by TreeNumber
Issue -
State: closed - Opened by ms609 about 3 years ago
#83 - Switch order of equality & condition expectations
Pull Request -
State: closed - Opened by hadley about 3 years ago
- 3 comments
#82 - RoguePlot() width scales with `p` (i.e. consensus proportion)
Issue -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#81 - v1.5.0
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#80 - multiPhylo object with single `tip.label` not supported
Issue -
State: closed - Opened by ms609 about 3 years ago
#79 - TestThat edition 3
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#78 - `Consensus()`
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#77 - Revert "`Consensus()`"
Pull Request -
State: closed - Opened by ms609 about 3 years ago
#76 - ape memory allocation issues
Issue -
State: closed - Opened by ms609 about 3 years ago
#75 - `Consensus()`
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#74 - Plot position of rogue taxa
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#73 - Remove Postorder tree size limit
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#72 - artefacts
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#71 - Optimize postorder
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#70 - Upgrade to testthat edition 3
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#69 - revdepcheck workflow
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#68 - simplify quicksort_by_smallest()
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#67 - Optimize postorder
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment
#66 - preorder_edges_and_nodes
Pull Request -
State: closed - Opened by ms609 about 3 years ago
- 1 comment