ms609/Quartet issues and pull requests

#68 - Adding functionality for trees with more than 477 leaves

Issue - State: open - Opened by simone-says about 2 months ago - 1 comment

#67 - Use centroid path decomposition tree algorithm

Issue - State: open - Opened by ms609 6 months ago

#66 - Calculating Quartet distance for trees with >500 leaves

Issue - State: open - Opened by MurrelSaldanha 6 months ago - 1 comment

#65 - `VisualizeQuartet()` return value

Pull Request - State: closed - Opened by ms609 7 months ago - 1 comment

#64 - Unifurcating root causes ` QuartetDistance`, `TripletDistance` error

Issue - State: open - Opened by mmore500 over 1 year ago - 2 comments

#63 - Analyze the package with RcppDeepState

Pull Request - State: closed - Opened by FabrizioSandri about 2 years ago - 8 comments

#62 - Replace `viridsLite` with `hcl.colors()`

Issue - State: open - Opened by ms609 over 2 years ago - 1 comment
Labels: R3.6.0

#61 - Leaf stability indices

Issue - State: open - Opened by ms609 almost 3 years ago

#60 - Allow comparison when tips aren't identical

Issue - State: open - Opened by ms609 about 3 years ago
Labels: enhancement

#59 - Memory leak

Issue - State: open - Opened by ms609 about 3 years ago
Labels: bug

#58 - Diagnose memory leak

Pull Request - State: closed - Opened by ms609 about 3 years ago

#57 - Switch to inline citations

Issue - State: closed - Opened by ms609 over 3 years ago

#56 - Create R-CMD-check.yml

Pull Request - State: closed - Opened by ms609 almost 4 years ago - 1 comment

#55 - v1.2.0

Pull Request - State: closed - Opened by ms609 about 4 years ago - 1 comment

#54 - `VisualizeQuartets()`

Pull Request - State: closed - Opened by ms609 about 4 years ago

#53 - Improve code coverage

Pull Request - State: closed - Opened by ms609 about 4 years ago

#52 - C++ implementation of `QuartetStates()`

Pull Request - State: closed - Opened by ms609 about 4 years ago - 1 comment

#51 - Tree comparison when trees may have non-identical leaves

Pull Request - State: closed - Opened by ms609 about 4 years ago - 1 comment

#50 - C++ implementation of `AllQuartets()`

Pull Request - State: closed - Opened by ms609 about 4 years ago - 1 comment

#49 - Use `int_fast16_t` where possible

Issue - State: open - Opened by ms609 over 4 years ago

#48 - rowSums() → .rowSums()

Pull Request - State: closed - Opened by ms609 over 4 years ago

#47 - Online help pages

Pull Request - State: closed - Opened by ms609 over 4 years ago

#46 - Update documentation

Pull Request - State: closed - Opened by ms609 over 4 years ago

#45 - Improve performance of `QuartetStates()`

Pull Request - State: closed - Opened by ms609 over 4 years ago

#44 - Improve performance of `QuartetStates()`

Pull Request - State: closed - Opened by ms609 over 4 years ago

#43 - class → inherits, and tidy

Pull Request - State: closed - Opened by ms609 almost 5 years ago

#42 - 1.1.0 tidying

Pull Request - State: closed - Opened by ms609 almost 5 years ago

#41 - v1.1.0

Pull Request - State: closed - Opened by ms609 almost 5 years ago

#40 - Calculate status from 3D arrays

Pull Request - State: closed - Opened by ms609 almost 5 years ago

#39 - Pass trees to C without Newick middleman

Pull Request - State: closed - Opened by ms609 about 5 years ago - 1 comment

#38 - Pass edges directly to C

Pull Request - State: closed - Opened by ms609 about 5 years ago - 1 comment

#37 - Metrics documentation

Pull Request - State: closed - Opened by ms609 about 5 years ago

#36 - Matrixificate Travis

Pull Request - State: closed - Opened by ms609 about 5 years ago - 1 comment

#35 - TreeTools

Pull Request - State: closed - Opened by ms609 about 5 years ago - 1 comment

#34 - Use TreeTrunk, not TreeSearch

Pull Request - State: closed - Opened by ms609 about 5 years ago

#33 - ptr_fun

Pull Request - State: closed - Opened by ms609 about 5 years ago

#32 - Other metrics

Pull Request - State: closed - Opened by ms609 almost 6 years ago - 3 comments

#31 - Portability

Pull Request - State: closed - Opened by ms609 almost 6 years ago - 2 comments

#30 - Improve portability

Pull Request - State: closed - Opened by ms609 almost 6 years ago

#29 - Is it necessary to fill out tables?

Issue - State: closed - Opened by ms609 almost 6 years ago

#28 - Improve vignettes by discussing generalized RF distances as an alternative

Issue - State: closed - Opened by ms609 almost 6 years ago

#27 - Documentation improvements

Pull Request - State: closed - Opened by ms609 almost 6 years ago - 3 comments

#26 - Establish that quartet metrics make sense when used with partitions

Issue - State: closed - Opened by ms609 almost 6 years ago

#25 - Use consistent structure and metrics for partitions as for quartets

Pull Request - State: closed - Opened by ms609 almost 6 years ago - 1 comment

#24 - Update documentation for splits

Issue - State: closed - Opened by ms609 almost 6 years ago

#23 - Use r, d, s, u structure for SplitStatus

Issue - State: closed - Opened by ms609 almost 6 years ago

#22 - Improve performance by passing trees directly to C

Issue - State: closed - Opened by ms609 almost 6 years ago
Labels: help wanted

#21 - Use `duplicated` to evaluate splits

Pull Request - State: closed - Opened by ms609 almost 6 years ago - 1 comment

#20 - Integrate tqDist

Pull Request - State: closed - Opened by ms609 about 6 years ago - 1 comment

#19 - Restore missing data from dataset 34

Issue - State: closed - Opened by ms609 almost 7 years ago - 1 comment