Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / mroosmalen/nanosv issues and pull requests
#80 - Compatibility with bed file is provided that contains 1,000,000 random positions on the hg19/GRCh37 human genome reference ?
Issue -
State: open - Opened by ElisouG 3 months ago
- 1 comment
#79 - NanoSV doesn't play nicely with guppy BAM file output
Issue -
State: open - Opened by adbeggs over 1 year ago
- 3 comments
#78 - Creating BED file problems
Issue -
State: closed - Opened by martika1997 almost 2 years ago
#77 - multithread not quite working
Issue -
State: open - Opened by xiaoyunguo about 3 years ago
#76 - Can nanoSV take both short and long reads?
Issue -
State: open - Opened by hbadrane over 3 years ago
#75 - Phasing mode not working
Issue -
State: open - Opened by yekaizhou over 3 years ago
#74 - what is an appropriate bed file?
Issue -
State: closed - Opened by yekaizhou over 3 years ago
- 3 comments
#73 - Sambamba is a dependency, but isn't listed as such in the conda package
Issue -
State: open - Opened by oneillkza over 3 years ago
#72 - ZeroDivisionError: float division by zero from NanoSV version 1.2.4
Issue -
State: open - Opened by fraser518 over 3 years ago
#71 - Why 1M lines in the bed file?
Issue -
State: open - Opened by utrivedi about 4 years ago
#70 - Incorrect output + Slow VCF writing
Issue -
State: open - Opened by GuillaumeHolley over 4 years ago
#69 - DR and DV fields on VCF
Issue -
State: closed - Opened by dangeles over 4 years ago
#68 - .bed and .init files are executable
Issue -
State: open - Opened by smoe over 4 years ago
#67 - setup.py: README.fst -> README.md
Pull Request -
State: open - Opened by smoe over 4 years ago
#66 - Please tag releases
Issue -
State: open - Opened by smoe over 4 years ago
#65 - conda installation is not working ?
Issue -
State: open - Opened by ptranvan over 4 years ago
- 1 comment
#64 - What is the human_hg19.bed file looks like?
Issue -
State: closed - Opened by ChaoTang-SCU over 4 years ago
- 1 comment
#63 - Output with breakends
Issue -
State: closed - Opened by zahrahaider over 4 years ago
#62 - Busy with printing to vcf...
Issue -
State: open - Opened by ndierckx almost 5 years ago
- 5 comments
#61 - NanoSV with truvari
Issue -
State: open - Opened by Tintest almost 5 years ago
- 3 comments
#60 - cannot call NanoSV after installing with conda
Issue -
State: closed - Opened by BCArg about 5 years ago
- 2 comments
#59 - NanoSV is not working
Issue -
State: open - Opened by amrita1983 about 5 years ago
- 1 comment
#58 - Conda install nanosv 1.2.4
Issue -
State: closed - Opened by max1c over 5 years ago
- 9 comments
#57 - NanoSV takes too long parsing BAM file in plant genome
Issue -
State: closed - Opened by metoru almost 6 years ago
- 8 comments
#56 - Dev
Pull Request -
State: closed - Opened by mroosmalen almost 6 years ago
#55 - Output reads supporting events?
Issue -
State: closed - Opened by mattdmem almost 6 years ago
#54 - VCF Filters
Issue -
State: closed - Opened by mpabloperez about 6 years ago
- 1 comment
#53 - Update create_random_position_bed.sh
Pull Request -
State: closed - Opened by jaesvi about 6 years ago
#52 - NanoSV takes too long parsing BAM file
Issue -
State: closed - Opened by fanavarro about 6 years ago
- 7 comments
#51 - Fixed some minor bugs in scripts/create_random_position_bed.py
Pull Request -
State: closed - Opened by mroosmalen about 6 years ago
#50 - Dev
Pull Request -
State: closed - Opened by mroosmalen about 6 years ago
#49 - Provided Bedfile is not hg19 coordinate
Issue -
State: closed - Opened by zhouanbo about 6 years ago
- 10 comments
#48 - ID and MATEID
Issue -
State: closed - Opened by tgong1 over 6 years ago
- 1 comment
#47 - Error while trying to call snps " UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 948: ordinal not in range(128)"
Issue -
State: closed - Opened by herrroaa over 6 years ago
- 20 comments
#46 - RF filtering model availability
Issue -
State: closed - Opened by MaestSi over 6 years ago
- 2 comments
#45 - pip install nanosv: UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1112: ordinal not in range(128)
Issue -
State: closed - Opened by philres over 6 years ago
- 5 comments
#44 - Genotype information: format field in VCF
Issue -
State: closed - Opened by tgong1 over 6 years ago
- 2 comments
#43 - Can't calculate coverage distribution.
Issue -
State: closed - Opened by OxPen over 6 years ago
- 8 comments
#42 - new release v1.2.0
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#41 - Update config.ini
Pull Request -
State: closed - Opened by jaesvi over 6 years ago
#40 - Update README.md
Pull Request -
State: closed - Opened by jaesvi over 6 years ago
#38 - Wkloosterman patch 1
Pull Request -
State: closed - Opened by wkloosterman over 6 years ago
#37 - Wkloosterman patch 1
Pull Request -
State: closed - Opened by wkloosterman over 6 years ago
#36 - New
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#35 - New
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#34 - BND and other SVtypes
Issue -
State: closed - Opened by wdecoster over 6 years ago
- 4 comments
#33 - SV type inference and coverage depth
Issue -
State: closed - Opened by tgong1 over 6 years ago
- 4 comments
#32 - error of last-train
Issue -
State: closed - Opened by HuJane over 6 years ago
- 3 comments
#31 - Got exception of object has no attribute 'infer_read_length' when running with BAM file by minimap2 with nanopore fastq files
Issue -
State: closed - Opened by mullinyu over 6 years ago
- 2 comments
#30 - Update config.ini
Pull Request -
State: closed - Opened by jaesvi over 6 years ago
#29 - coverage
Issue -
State: closed - Opened by njaupan over 6 years ago
- 6 comments
#28 - Dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#27 - Dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#26 - Dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#25 - master to dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#24 - NanoSV on synthetic bam files
Issue -
State: closed - Opened by AlbertoMagi over 6 years ago
- 2 comments
#23 - Add configuration option to use multiple threads with sambamba
Pull Request -
State: closed - Opened by adelq over 6 years ago
#22 - Scripts + cleanup
Pull Request -
State: closed - Opened by adelq over 6 years ago
#21 - Instructions on generating BED file reference
Issue -
State: closed - Opened by adelq over 6 years ago
- 4 comments
#20 - Use multiple processes
Issue -
State: closed - Opened by wdecoster over 6 years ago
- 3 comments
Labels: enhancement
#19 - Question about the calculation of gap value.
Issue -
State: closed - Opened by ttbond over 6 years ago
- 5 comments
#18 - Add bioconda installation option
Pull Request -
State: closed - Opened by wdecoster over 6 years ago
#17 - AttributeError: 'module' object has no attribute 'sample_name'
Issue -
State: closed - Opened by ttbond over 6 years ago
- 6 comments
#16 - Dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#15 - Bug fixes
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#14 - ZeroDivisionError in getDupDelcoverage due to awk NR!=1
Issue -
State: closed - Opened by wdecoster over 6 years ago
- 4 comments
#13 - Inappropriate bed file leads to silent issue*** (?)
Issue -
State: closed - Opened by wdecoster over 6 years ago
#12 - Bam file without index results in late error
Issue -
State: closed - Opened by wdecoster over 6 years ago
#11 - Writing to stdout: unexpected calls to print
Issue -
State: closed - Opened by wdecoster over 6 years ago
#10 - Version 1.1.0
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#9 - Make version numbers more obvious
Issue -
State: closed - Opened by datakid over 6 years ago
- 1 comment
#8 - divide by zero error while running
Issue -
State: closed - Opened by MMicorescu over 6 years ago
#7 - Dev
Pull Request -
State: closed - Opened by mroosmalen over 6 years ago
#6 - Error while running
Issue -
State: closed - Opened by amrita1983 over 6 years ago
- 4 comments
#5 - how to correctly convert maf to sam
Issue -
State: closed - Opened by fcdn007 almost 7 years ago
- 1 comment
#4 - -pidf argument can't take a new value.
Issue -
State: closed - Opened by MattBashton almost 7 years ago
#3 - Documentation on parameters
Issue -
State: closed - Opened by MattBashton almost 7 years ago
- 3 comments
#2 - License?
Issue -
State: closed - Opened by druvus over 7 years ago
#1 - request to work with other aligners
Issue -
State: closed - Opened by proukakis over 7 years ago
- 6 comments