Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mrc-ide/covid-sim issues and pull requests

#494 - Fix CI failing on Mac OS

Pull Request - State: closed - Opened by weshinsley over 1 year ago

#493 - Mac OS builds failing re OpenMP

Issue - State: closed - Opened by weshinsley over 1 year ago - 4 comments

#492 - Dlaydon/vary betas

Pull Request - State: open - Opened by dlaydon almost 2 years ago

#491 - Vary contact rates2

Pull Request - State: closed - Opened by dlaydon over 2 years ago

#490 - Wes renaming

Pull Request - State: closed - Opened by dlaydon over 2 years ago

#489 - Clean of various functions to aid legibility

Pull Request - State: closed - Opened by dlaydon over 2 years ago

#488 - clicked the wrong button, sorry.

Issue - State: closed - Opened by jbrea almost 3 years ago

#487 - Correct a missing-param logic

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#486 - Fix some oversized int params

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#485 - Fix misplaced free

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#483 - Unit tests on parameters and a few misc fixes

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#482 - Unclear code (unnecessary braces) in Update.cpp: DoInfect

Issue - State: closed - Opened by AndreyKarpov over 3 years ago - 2 comments

#481 - Re-implement dlaydon/LinearScaleIFR

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#480 - IFR scales linearly not step function

Pull Request - State: closed - Opened by dlaydon over 3 years ago - 1 comment

#479 - Wes/params2

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#478 - added seroconversion params to MakePreParamsList.R

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#477 - Wes/param refactor

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#476 - Dlaydon/mcmc 3

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#475 - Dlaydon/scale ifr over time

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#474 - minor annotations

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#473 - annotated SetupModel::ReadFitIter to reflect CovidSimMCMC

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#472 - Wes/files refactor

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#471 - Dlaydon/fix contact matrices

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#470 - Extract use of fopen

Pull Request - State: closed - Opened by weshinsley over 3 years ago

#469 - Dlaydon/mcmc 2

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#468 - changed critical cases to cases in inputs-and-outputs.md

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#467 - Columns in age-specific output

Issue - State: closed - Opened by klpn over 3 years ago - 1 comment

#466 - Dlaydon/mcmc

Pull Request - State: closed - Opened by dlaydon over 3 years ago

#465 - Initialize ModelValue properly in CovidSim.cpp

Pull Request - State: closed - Opened by krook1024 over 3 years ago - 2 comments

#464 - Uninitialized variable 'ModelValue' used. CovidSim.cpp 5412

Issue - State: closed - Opened by SecNotice over 3 years ago - 4 comments

#463 - Dlaydon/clean comment treat sweep

Pull Request - State: closed - Opened by dlaydon almost 4 years ago

#462 - Dlaydon/update icdfs in pre params

Pull Request - State: closed - Opened by dlaydon almost 4 years ago

#461 - Information on generating custom Population Density files

Issue - State: open - Opened by hughormonducd almost 4 years ago - 1 comment

#460 - Dlaydon/comment mcmc

Pull Request - State: closed - Opened by dlaydon almost 4 years ago

#459 - Would it be possible to re-introduce tagged releases?

Issue - State: closed - Opened by owainkenwayucl about 4 years ago - 3 comments

#458 - Misc

Pull Request - State: closed - Opened by dlaydon about 4 years ago

#457 - Can I generate data for a city level?

Issue - State: closed - Opened by AmolSakhale about 4 years ago - 1 comment

#456 - typo in README: "seends"

Issue - State: closed - Opened by robbiemorrison about 4 years ago

#455 - Use <random> as an alternative to Rand.h

Issue - State: open - Opened by zebmason about 4 years ago

#454 - Resolve many VS warnings including mystery 'k'

Pull Request - State: closed - Opened by weshinsley about 4 years ago

#453 - Stop on first regression test failure

Pull Request - State: closed - Opened by zebmason about 4 years ago - 3 comments

#452 - Fail early on regression tests?

Issue - State: closed - Opened by zebmason about 4 years ago - 1 comment

#451 - Add documentation for writing UnitTests

Pull Request - State: closed - Opened by matt-gretton-dann about 4 years ago

#450 - Fix minor warnings

Pull Request - State: closed - Opened by weshinsley about 4 years ago - 1 comment

#449 - Fix incorrect path to exe in run_sample.py on Win

Pull Request - State: closed - Opened by weshinsley about 4 years ago

#447 - Looks like the wrong scale in distance calculations (periodic)

Issue - State: open - Opened by zebmason over 4 years ago - 4 comments

#446 - Large functions

Issue - State: open - Opened by zebmason over 4 years ago

#445 - InfStat and Direction rollup of refactors

Pull Request - State: closed - Opened by weshinsley over 4 years ago - 2 comments

#444 - Separate out the distance calculations

Pull Request - State: open - Opened by zebmason over 4 years ago - 1 comment

#443 - Use guards instead of pragma once

Pull Request - State: closed - Opened by weshinsley over 4 years ago

#442 - Add a extra level of namespace to avoid any future clashes.

Pull Request - State: closed - Opened by zebmason over 4 years ago

#441 - Separate interface from implementation as per the normal convention

Pull Request - State: closed - Opened by zebmason over 4 years ago - 1 comment

#440 - Split the unit and regression tests

Pull Request - State: closed - Opened by zebmason over 4 years ago - 2 comments

#439 - Refactor colnames fprintf some more

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago

#438 - Sweep.cpp contains large functions and duplicated code

Issue - State: closed - Opened by DavidVernest over 4 years ago

#436 - Set scale to be a diagonal matrix and not a vector.

Pull Request - State: closed - Opened by zebmason over 4 years ago - 1 comment

#435 - InfectSweep - extract helper functions to add infections

Pull Request - State: closed - Opened by DavidVernest over 4 years ago - 4 comments

#431 - Inconsistent build path (cmake vs run_sample.py) on Windows

Issue - State: closed - Opened by AmolSakhale over 4 years ago - 18 comments

#424 - You can't multiply two vectors to get another vector

Issue - State: closed - Opened by zebmason over 4 years ago - 2 comments

#416 - Use enum struct for InfStat

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago - 2 comments

#415 - Use enum struct for Direction

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago

#412 - Replace counter assignment with breaks

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago - 3 comments

#411 - Fix issue with initialisation of inv journey dists

Pull Request - State: closed - Opened by matt-gretton-dann over 4 years ago - 3 comments

#405 - Extract a struct for building bitmaps

Pull Request - State: open - Opened by zebmason over 4 years ago - 1 comment

#404 - Added Severity helper functions to Update.cpp

Pull Request - State: closed - Opened by DavidVernest over 4 years ago - 1 comment

#399 - Abstract cn_{1,2,3,4} functionality

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago - 7 comments

#398 - Abstract fread/write_big into f_big

Pull Request - State: closed - Opened by zlatanvasovic over 4 years ago - 7 comments

#396 - Added Cell/Hosts helper functions to Update.cpp

Pull Request - State: closed - Opened by DavidVernest over 4 years ago

#387 - Added state transition helper functions to Update.cpp

Pull Request - State: closed - Opened by DavidVernest over 4 years ago

#380 - Metadata Update

Issue - State: closed - Opened by reeshmabijosh over 4 years ago - 1 comment

#378 - Question about compilation using GCC 7

Issue - State: closed - Opened by mwoodbri over 4 years ago - 6 comments

#376 - Rename some parameters in Param.h

Pull Request - State: closed - Opened by jieyouxu over 4 years ago - 2 comments

#360 - Set -fp-model precise when using the ICPC+Linux

Pull Request - State: closed - Opened by owainkenwayucl over 4 years ago - 11 comments

#346 - More robust parameter file handling

Pull Request - State: open - Opened by ozmorph over 4 years ago - 2 comments

#341 - Development status

Issue - State: open - Opened by zebmason over 4 years ago - 14 comments

#338 - Algorithm to map a point to a microcell

Issue - State: closed - Opened by galactic-src over 4 years ago - 1 comment

#335 - SpatialBoundingBox maximums

Issue - State: closed - Opened by galactic-src over 4 years ago - 1 comment

#316 - Converted Param.h icdf arrays from double array to InverseCdf class

Pull Request - State: closed - Opened by DavidVernest over 4 years ago - 2 comments

#305 - Use a widely-available coding style and enforce it

Issue - State: closed - Opened by zlatanvasovic over 4 years ago - 19 comments

#292 - Abstract inf state in person into several functions.

Pull Request - State: closed - Opened by CloneDeath over 4 years ago - 8 comments

#291 - Add function to check if person is dead or alive

Issue - State: closed - Opened by CloneDeath over 4 years ago - 1 comment

#271 - Decompose into pure functions and eliminate mutable globals.

Issue - State: closed - Opened by robscovell-ts over 4 years ago - 5 comments

#256 - Replaced header guards with #pragma once.

Pull Request - State: closed - Opened by CloneDeath over 4 years ago - 9 comments

#250 - Update README.md

Pull Request - State: closed - Opened by phelps-sg over 4 years ago - 1 comment

#249 - Alignment in Model.h

Issue - State: closed - Opened by StevenWhitehouse over 4 years ago - 8 comments

#247 - Decompose model into ensemble of simpler models

Issue - State: closed - Opened by phelps-sg over 4 years ago - 10 comments

#231 - Create an experimental branch/repo/fork where big changes can be tested

Issue - State: closed - Opened by Feynstein over 4 years ago - 19 comments

#229 - Add boost to official repo

Issue - State: closed - Opened by Feynstein over 4 years ago - 9 comments

#213 - Refactor out point classes, etc.

Pull Request - State: closed - Opened by zebmason over 4 years ago - 8 comments

#208 - Replace monolithic design with modular code

Issue - State: closed - Opened by phelps-sg over 4 years ago - 10 comments

#203 - Consider the use of GPGPU (like CUDA) for performance

Issue - State: closed - Opened by Feynstein over 4 years ago - 6 comments

#192 - [Medium]Investigate the High memory footprint issue

Issue - State: closed - Opened by Feynstein over 4 years ago - 6 comments

#187 - File actual issues with the code (and maybe use Jira for tasks)

Issue - State: closed - Opened by Feynstein over 4 years ago - 11 comments

#184 - [Medium]Switching to an external/more powerful random number generator

Issue - State: closed - Opened by Feynstein over 4 years ago - 18 comments

#179 - Re-open and unlock issue #144 (Publish original source code)

Issue - State: closed - Opened by bitcartel over 4 years ago - 119 comments

#171 - missing logic in translated Fortran functions?

Issue - State: closed - Opened by Smattr over 4 years ago - 3 comments

#78 - Calloc zero size

Issue - State: closed - Opened by WeiqunZhang over 4 years ago - 2 comments
Labels: enhancement

#77 - Replace all uses of malloc() with calloc()

Issue - State: closed - Opened by matt-gretton-dann over 4 years ago - 1 comment