Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / mrc-ide/EpiEstim issues and pull requests
#166 - make EpiEstim compatible with incidence2
Issue -
State: open - Opened by annecori about 2 months ago
#165 - Clearer deliniation illustrative and live vignette code
Issue -
State: open - Opened by athowes 2 months ago
#164 - fix bug in process_I and add test
Pull Request -
State: closed - Opened by annecori 5 months ago
#163 - Plots
Pull Request -
State: closed - Opened by rebeccanash 9 months ago
#162 - Matching vector lengths to original timeseries
Issue -
State: open - Opened by adamkucharski 10 months ago
- 1 comment
#161 - R0 correction
Pull Request -
State: open - Opened by abriz97 11 months ago
#160 - Recon opt
Pull Request -
State: closed - Opened by rebeccanash about 1 year ago
#159 - Add lint-changed-files workflow
Pull Request -
State: closed - Opened by Bisaloo about 1 year ago
#158 - Set up static code analysis with lintr and fix lints
Pull Request -
State: closed - Opened by Bisaloo about 1 year ago
#157 - `method` argument not used in `make_config()`
Issue -
State: open - Opened by davidchampredon over 1 year ago
#156 - Weekly
Pull Request -
State: closed - Opened by rebeccanash over 1 year ago
#155 - Create a pkgdown website for EpiEstim
Issue -
State: open - Opened by thibautjombart over 1 year ago
Labels: enhancement
#154 - Document use of incidence2 as inputs
Issue -
State: open - Opened by thibautjombart over 1 year ago
Labels: enhancement
#153 - Use incidence2 inputs
Issue -
State: open - Opened by thibautjombart over 1 year ago
Labels: enhancement
#152 - Turn estimate_R into a generic with S3 methods
Issue -
State: open - Opened by thibautjombart over 1 year ago
Labels: enhancement
#151 - estimate_advantage is not available if the package is installed using install.packages()
Issue -
State: open - Opened by anjalika-nande over 1 year ago
#150 - Return posterior draws for R in estimate_R
Issue -
State: open - Opened by nbanho almost 2 years ago
#149 - vignettes are not automatically visible
Issue -
State: open - Opened by annecori about 2 years ago
#148 - plots misaligned
Issue -
State: closed - Opened by annecori about 2 years ago
#147 - TODO for weekly work
Issue -
State: open - Opened by annecori about 2 years ago
#146 - Clean vignettes and docstrings
Pull Request -
State: closed - Opened by pitmonticone about 2 years ago
- 1 comment
#145 - remove browser()
Pull Request -
State: closed - Opened by rebeccanash over 2 years ago
#144 - fix bug
Pull Request -
State: closed - Opened by annecori over 2 years ago
#143 - Updated README and vignettes
Pull Request -
State: closed - Opened by rebeccanash over 2 years ago
#142 - Struggling to interpret discr_si
Issue -
State: open - Opened by tim-laurence-dhsc over 2 years ago
- 2 comments
#141 - `estimate_R()` error when dates are not consecutive
Issue -
State: open - Opened by arnold-c over 2 years ago
#140 - Edits for paper
Pull Request -
State: closed - Opened by sangeetabhatia03 over 2 years ago
#139 - MV-EpiEstim into EpiEstim development version
Pull Request -
State: closed - Opened by sangeetabhatia03 over 2 years ago
#138 - Optional re-ordering and vignette
Pull Request -
State: closed - Opened by j-wardle over 2 years ago
- 1 comment
#137 - When reordering incidence, also change the priors in estimate_advantage
Issue -
State: open - Opened by sangeetabhatia03 over 2 years ago
Labels: priority
#136 - more helpful error message if incidence format and structure issues
Issue -
State: open - Opened by BGalindo-Prieto over 2 years ago
- 1 comment
#135 - Sensible defaults for epsilon
Pull Request -
State: closed - Opened by sangeetabhatia03 over 2 years ago
#134 - Catch non-integer inputs
Issue -
State: open - Opened by jbracher over 2 years ago
#133 - Improving seealso in ?estimate_R
Pull Request -
State: closed - Opened by thibautjombart almost 3 years ago
Labels: enhancement
#132 - Return convergence diagnostics in addition to the flag indicating convergence
Pull Request -
State: closed - Opened by sangeetabhatia03 almost 3 years ago
#131 - Run and store result of convergence check
Pull Request -
State: closed - Opened by j-wardle almost 3 years ago
#130 - Check for zero incidence in estimate_joint
Issue -
State: open - Opened by sangeetabhatia03 almost 3 years ago
#129 - pre-compute quantities to save time
Pull Request -
State: closed - Opened by annecori almost 3 years ago
- 1 comment
#127 - In estimate_joint, fix tmin to be the 95th percentile of the SI distribution
Pull Request -
State: closed - Opened by sangeetabhatia03 about 3 years ago
#126 - Fix default priors for epsilon and R
Pull Request -
State: closed - Opened by sangeetabhatia03 about 3 years ago
#125 - Fix issues 122 and 123
Pull Request -
State: closed - Opened by sangeetabhatia03 about 3 years ago
- 1 comment
#124 - improvement for mutivariants
Issue -
State: open - Opened by pnouvellet about 3 years ago
#123 - For more than 3 variants, rate update is incorrect
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
- 1 comment
#122 - Initial value for epsilon is really high in estimate_joint
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
- 1 comment
#121 - trying with single location
Issue -
State: open - Opened by pnouvellet about 3 years ago
#120 - estimate_join fails with uninformative error
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
- 1 comment
#119 - Estimate_joint fails when number of locations = 1
Issue -
State: open - Opened by rebeccanash about 3 years ago
- 1 comment
#118 - Improve implementation of reordering within estimate_joint
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
#117 - Handle imported cases in multi-variant estimation
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
#116 - README.md with clearer citation info including DOI
Pull Request -
State: closed - Opened by t-pollington about 3 years ago
#115 - estimate_joint should return similar output to estimate_R
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
- 1 comment
#114 - estimate_joint fails when number of locations is 1
Issue -
State: open - Opened by sangeetabhatia03 about 3 years ago
#113 - Change si to si[-1] for projections
Pull Request -
State: closed - Opened by rebeccanash about 3 years ago
#112 - DOI
Issue -
State: closed - Opened by t-pollington about 3 years ago
- 2 comments
#111 - Improve doc
Pull Request -
State: closed - Opened by annecori about 3 years ago
#110 - Add vignette
Pull Request -
State: closed - Opened by annecori about 3 years ago
#109 - Update README.md
Pull Request -
State: closed - Opened by pitmonticone over 3 years ago
#108 - CI: Add a weekly scheduled run
Pull Request -
State: closed - Opened by EwoutH over 3 years ago
#107 - estimate of serial interval
Issue -
State: open - Opened by Suzzan-1991 over 3 years ago
#106 - vdiffr tests broken
Issue -
State: open - Opened by richfitz over 3 years ago
- 4 comments
#105 - Use vdiffr optionally
Pull Request -
State: closed - Opened by richfitz over 3 years ago
#104 - Changing the title of estimate_R plot
Issue -
State: open - Opened by ramashka328 over 3 years ago
#103 - Uncertain-SI resampling process does not conform to description
Issue -
State: open - Opened by robchallen almost 4 years ago
#102 - Apply EpiEstim to real daily covid data
Issue -
State: open - Opened by supermarco99 almost 4 years ago
#101 - Strange results on simulated SIR data
Issue -
State: closed - Opened by gcgibson about 4 years ago
- 1 comment
#100 - Tag release of 2.2-3
Issue -
State: closed - Opened by zkamvar about 4 years ago
- 3 comments
#99 - Ignore more files
Pull Request -
State: closed - Opened by richfitz about 4 years ago
- 1 comment
#98 - Bump version to 2.2-3
Pull Request -
State: closed - Opened by jstockwin about 4 years ago
- 1 comment
#97 - Confidence Interal of EpiEStim app - identical for 75% & 25%
Issue -
State: closed - Opened by kcng802 about 4 years ago
- 5 comments
#96 - Fix quantiles
Pull Request -
State: closed - Opened by annecori about 4 years ago
- 3 comments
#95 - x-y error in incidence plot
Issue -
State: closed - Opened by rdlarah about 4 years ago
- 3 comments
#94 - Comparison of EpiEstim::wallinga_teunis and R0::est.R0.TD
Issue -
State: open - Opened by tamas-ferenci about 4 years ago
- 5 comments
Labels: bug
#93 - Wallinga fix
Pull Request -
State: closed - Opened by jstockwin about 4 years ago
- 4 comments
#92 - Error calling `wallinga_teunis` (length mismatch)
Issue -
State: closed - Opened by edbaskerville about 4 years ago
- 5 comments
Labels: bug
#91 - Add pull request template
Pull Request -
State: closed - Opened by jstockwin over 4 years ago
- 2 comments
#90 - Allow negative-valued SI (COVID-19 modelling)
Issue -
State: open - Opened by giulianonetto over 4 years ago
- 9 comments
#89 - Fix broken quantiles (#88)
Pull Request -
State: closed - Opened by jstockwin over 4 years ago
- 9 comments
#88 - Quantile.0.25(R) always equals Quantile.0.75(R)
Issue -
State: closed - Opened by robchallen over 4 years ago
- 5 comments
Labels: bug
#87 - update plot method
Pull Request -
State: closed - Opened by zkamvar over 4 years ago
- 4 comments
#86 - Ugly TableGrob output in knitr documents when plot() called
Issue -
State: closed - Opened by timchurches over 4 years ago
- 3 comments
#85 - Update README.md
Pull Request -
State: closed - Opened by annecori almost 5 years ago
#84 - Windows check fix
Pull Request -
State: closed - Opened by zkamvar almost 5 years ago
- 2 comments
#83 - Fix 35
Pull Request -
State: closed - Opened by annecori almost 5 years ago
- 5 comments
#82 - Update Title and Description of DESCRIPTION file
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
#81 - Anne fixes
Pull Request -
State: closed - Opened by annecori about 5 years ago
- 11 comments
#80 - check compatibility functions
Issue -
State: closed - Opened by annecori about 5 years ago
- 3 comments
#79 - Fix 65
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
- 2 comments
#78 - Modernise vignette
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
#77 - use CRAN version of coarseDataTools
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
- 1 comment
#76 - add sample_posterior_R function
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
- 4 comments
#75 - Add accurate list of Authors to DESCRIPTION
Issue -
State: closed - Opened by zkamvar about 5 years ago
- 3 comments
#74 - trim dependencies from DESCRIPTION
Pull Request -
State: closed - Opened by zkamvar about 5 years ago
- 8 comments
#73 - Remove superfluous packages
Issue -
State: closed - Opened by zkamvar about 5 years ago
- 1 comment
#72 - Replace compare with testthat::expect_equal_to_reference()
Issue -
State: closed - Opened by jstockwin about 5 years ago
- 1 comment
#71 - Remove remote for coarseDataTools
Issue -
State: closed - Opened by jstockwin about 5 years ago
- 1 comment
#70 - add a function to sample from posterior
Issue -
State: closed - Opened by annecori about 5 years ago
- 1 comment
#66 - Add NEWS.md and summarize changes between versions 1.1-2 and 2
Issue -
State: closed - Opened by zkamvar about 5 years ago
#65 - Use incidence accessors instead of bracket notation
Issue -
State: closed - Opened by zkamvar about 5 years ago
#63 - Consolidate `new-version` branch with `release`
Issue -
State: closed - Opened by zkamvar about 5 years ago
- 7 comments
#62 - plot several R at a time
Issue -
State: closed - Opened by annecori almost 6 years ago
- 3 comments