Ecosyste.ms: Issues

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GitHub / mpusp/snakemake-crispr-guides issues and pull requests

#35 - fix: minor issues

Pull Request - State: open - Opened by m-jahn 8 months ago

#34 - minor issues with WD when sourcing script, and ggplot2

Issue - State: open - Opened by m-jahn 8 months ago
Labels: bug

#33 - chore(main): release 1.3.0

Pull Request - State: open - Opened by github-actions[bot] 10 months ago
Labels: autorelease: pending

#32 - feat: changed license to MIT, closes #30

Pull Request - State: closed - Opened by m-jahn 10 months ago

#31 - fix: updated conda environments

Pull Request - State: closed - Opened by DonatWulf 11 months ago - 1 comment

#30 - change license to MIT

Issue - State: closed - Opened by m-jahn 11 months ago
Labels: enhancement

#29 - feat: various fixes for improved tiling function

Pull Request - State: closed - Opened by m-jahn 12 months ago

#28 - improve output figures for intergenic regions when using tiling approach

Issue - State: closed - Opened by m-jahn 12 months ago
Labels: enhancement

#27 - chore(main): release 1.2.0

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: autorelease: tagged

#26 - feat: enable workflow to run with singularity

Pull Request - State: closed - Opened by m-jahn about 1 year ago

#25 - feature request: option to add additional space around CDS when designing intergenic guides

Issue - State: closed - Opened by m-jahn about 1 year ago
Labels: enhancement

#24 - feat: various milestones for release v1.1.0

Pull Request - State: closed - Opened by m-jahn about 1 year ago

#23 - feat: various improvements of documentation

Pull Request - State: closed - Opened by m-jahn about 1 year ago

#22 - workflow is listed in snakemake wf catalog, but not as "standardized usage"

Issue - State: closed - Opened by m-jahn about 1 year ago - 3 comments
Labels: documentation

#21 - Additional types of CDS annotations

Issue - State: closed - Opened by Michael-Astbury about 1 year ago - 2 comments
Labels: enhancement

#20 - add possibility to create guides by tiling only, or by tiling for intergenic regions (mixed)

Issue - State: closed - Opened by m-jahn about 1 year ago - 1 comment
Labels: enhancement

#18 - feat: added config README and updated workflow catalog options

Pull Request - State: closed - Opened by m-jahn over 1 year ago

#17 - feat: various improvements to handle input and output (mainly gff files)

Pull Request - State: closed - Opened by m-jahn over 1 year ago

#16 - add feature to export guide list as GFF file for visualization

Issue - State: closed - Opened by m-jahn over 1 year ago
Labels: enhancement

#15 - improve flexibility of handling `gff` input files

Issue - State: closed - Opened by m-jahn over 1 year ago
Labels: enhancement

#14 - fix: bump versions and remove installation of 1 package from gh

Pull Request - State: closed - Opened by m-jahn over 1 year ago

#13 - chore(main): release 1.1.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#12 - Feature requests: add function to design random control guide RNAs

Issue - State: closed - Opened by m-jahn over 1 year ago - 1 comment

#11 - Add functionality to deal with guides targeting multiple loci (e.g. duplicated) genes

Issue - State: closed - Opened by m-jahn over 1 year ago
Labels: bug, enhancement

#10 - chore(main): release 1.0.0

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: autorelease: tagged

#9 - avoid overlap between TSS window (5' UTR) and 3' terminus of upstream gene

Issue - State: closed - Opened by m-jahn over 1 year ago
Labels: bug

#8 - add overview figures for pipeline and guide RNA localization on strands

Issue - State: closed - Opened by m-jahn almost 2 years ago
Labels: documentation

#7 - Test behavior with alternative options

Issue - State: closed - Opened by m-jahn almost 2 years ago - 1 comment
Labels: enhancement

#6 - Testing fails on GH actions with snakemake test workflow

Issue - State: closed - Opened by m-jahn almost 2 years ago
Labels: bug

#5 - Feature request: add score based on G content of seed region

Issue - State: closed - Opened by m-jahn almost 2 years ago
Labels: enhancement

#4 - Add module to generate BSgenome --> enables bowtie as default off-target search

Issue - State: closed - Opened by m-jahn almost 2 years ago - 1 comment
Labels: enhancement

#3 - Feature request: add score based on distance to TSS

Issue - State: closed - Opened by m-jahn almost 2 years ago
Labels: enhancement

#2 - Feature request: add CRISPRoff score

Issue - State: closed - Opened by m-jahn almost 2 years ago - 1 comment
Labels: enhancement

#1 - chore(main): release 1.0.0

Pull Request - State: closed - Opened by github-actions[bot] almost 2 years ago
Labels: autorelease: pending