Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mpc-bioinformatics/ProtGraph issues and pull requests

#73 - ProtGraph Release 0.3.11

Pull Request - State: closed - Opened by Luxxii 4 months ago

#72 - ProtGraph Merge

Pull Request - State: closed - Opened by Luxxii 7 months ago

#71 - Generted FASTAs contain OR[|None] Entries, which contain no information

Issue - State: open - Opened by Luxxii 10 months ago
Labels: enhancement

#70 - FASTA-Exporter also exports spaces in the Headers. We should remove them

Issue - State: open - Opened by Luxxii 11 months ago
Labels: bug, enhancement

#69 - ProtGraph Version 0.3.10

Pull Request - State: closed - Opened by Luxxii over 1 year ago

#67 - Updating PTMs

Issue - State: closed - Opened by Luxxii over 1 year ago - 1 comment

#63 - add multithreading queue size arg

Pull Request - State: open - Opened by antonneubauer over 1 year ago - 2 comments

#62 - Release of ProtGraph 0.3.9

Pull Request - State: closed - Opened by Luxxii almost 2 years ago

#61 - Fixed human error

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#60 - ProtGraph Version 0.3.7

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#59 - ProtGraph 0.3.6

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#58 - ProtGraph 0.3.5

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#57 - Include Feature CHAIN

Issue - State: closed - Opened by Luxxii over 2 years ago
Labels: enhancement

#56 - Finishing PTMS (N and C Terms)

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#55 - Error of reading SP-EMBL files via Windows

Issue - State: open - Opened by Luxxii over 2 years ago - 1 comment

#54 - ProtGraph 0.3.3

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#53 - Protgraph 0.3.2

Pull Request - State: closed - Opened by Luxxii over 2 years ago

#52 - Outsource Parsing into Processes

Issue - State: closed - Opened by Luxxii over 2 years ago
Labels: enhancement

#51 - ProtGraph 0.3.1 Release

Pull Request - State: closed - Opened by Luxxii almost 3 years ago

#50 - Reimplementing (Refactoring) of Signal Peptides

Issue - State: open - Opened by Luxxii about 3 years ago
Labels: enhancement

#49 - Dependency apsw is not provided in PyPI

Issue - State: closed - Opened by Luxxii about 3 years ago - 2 comments
Labels: bug

#48 - Protgraph PR 0.30 consumes to much RAM

Issue - State: closed - Opened by Luxxii about 3 years ago - 1 comment
Labels: bug, enhancement

#47 - Protgraph 0.3.0

Pull Request - State: closed - Opened by Luxxii about 3 years ago

#46 - Potential Bottlenecks in ProtGraph

Issue - State: open - Opened by Luxxii over 3 years ago
Labels: enhancement

#45 - Pep Export depending on mass

Issue - State: closed - Opened by Luxxii over 3 years ago - 1 comment
Labels: enhancement

#44 - ProtGraph 0.2.1

Pull Request - State: closed - Opened by Luxxii over 3 years ago

#43 - Enhance Dyn Programming and Top Order and include other interesting statistics

Issue - State: closed - Opened by Luxxii over 3 years ago - 1 comment
Labels: enhancement

#42 - Cannot parse Isoform Mutagens and Conflicts for specific Proteins

Issue - State: closed - Opened by Luxxii over 3 years ago - 3 comments
Labels: bug

#41 - Protein Q9R1E6 generates parallel edges, how do we want to handle parallel edges?

Issue - State: closed - Opened by Luxxii over 3 years ago - 2 comments
Labels: bug

#40 - New FeatureParsing, New CLI and some minor changes

Pull Request - State: closed - Opened by Luxxii over 3 years ago

#39 - Update Readme with new available Options and changing CLI

Issue - State: closed - Opened by Luxxii over 3 years ago

#38 - Add New Feature: MUTAGEN

Issue - State: closed - Opened by Luxxii over 3 years ago
Labels: enhancement

#37 - Add new Feature: CONFLICT

Issue - State: closed - Opened by Luxxii over 3 years ago
Labels: enhancement

#36 - New Statistic: Get all possible Weights from a Protein Graph

Issue - State: closed - Opened by Luxxii over 3 years ago - 1 comment
Labels: enhancement

#35 - Split Protgraph into possibly two Projects?

Issue - State: closed - Opened by Luxxii over 3 years ago - 1 comment
Labels: enhancement

#34 - Version Bump to 0.1.2

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#33 - Error in PepFasta, when retrieving substitution information

Issue - State: closed - Opened by Luxxii almost 4 years ago
Labels: bug

#32 - Error occures when digesting via full

Issue - State: closed - Opened by Luxxii almost 4 years ago
Labels: bug

#31 - ProtGraph Fixes and more (v0.1.1)

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#30 - Split the AminoAcids (B, Z maybe even X or others) into the concrete AminoAcids

Issue - State: closed - Opened by Luxxii almost 4 years ago - 1 comment
Labels: enhancement

#29 - New Export Format PEFF

Issue - State: open - Opened by Luxxii almost 4 years ago
Labels: enhancement

#28 - Utilities should import Protgraph if methods are used from them

Issue - State: closed - Opened by Luxxii almost 4 years ago

#27 - Bioconda add License to recipe

Issue - State: closed - Opened by Luxxii almost 4 years ago

#26 - Add new Exporters and minor changes to exports and possibly PDB Generation

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#25 - Changed Version to 0.0.2b3

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#24 - Added Pipfile to package

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#23 - Version Bump to 0.0.2b2. Typos/Fixes and other small changes

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#22 - Changed PyPI Workflow

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#21 - PyPI PullRequest

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#20 - PyPI

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#19 - Abstraction of Peptide Exporters and More Exporters

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#18 - Added Gremlin Export, first functional Tests. Some minor Improvements

Pull Request - State: closed - Opened by Luxxii almost 4 years ago

#17 - Optimization of Merge Aminoacids

Issue - State: closed - Opened by Luxxii almost 4 years ago - 3 comments
Labels: enhancement

#16 - Fixes mpc-bioinformatics#15

Pull Request - State: closed - Opened by Luxxii about 4 years ago

#15 - Protein P20729 seems to be generated wrong

Issue - State: closed - Opened by Luxxii about 4 years ago
Labels: bug

#14 - Only apply variants which are significant (or unknown or other)

Issue - State: open - Opened by Luxxii about 4 years ago - 1 comment
Labels: enhancement

#13 - INIT_MET has errors on Proteins: A0A4X1VEZ3 and F1SN05

Issue - State: closed - Opened by Luxxii about 4 years ago
Labels: bug

#12 - More Exporters

Pull Request - State: closed - Opened by Luxxii about 4 years ago - 2 comments

#11 - Implementation of Full Cleavage. Fix for INIT_MET

Pull Request - State: closed - Opened by Luxxii about 4 years ago

#8 - No Isoform generation for Q9QXS1 possible

Issue - State: closed - Opened by Luxxii about 4 years ago - 1 comment

#7 - FASTA Export & Full Cleavage

Issue - State: closed - Opened by Luxxii about 4 years ago - 3 comments

#6 - PyPi Integration and Documentation

Issue - State: closed - Opened by Luxxii about 4 years ago
Labels: enhancement

#5 - Project Name Suggestions

Issue - State: closed - Opened by Luxxii about 4 years ago - 1 comment

#4 - Export: JanusGraph

Issue - State: closed - Opened by Luxxii about 4 years ago - 2 comments
Labels: enhancement

#3 - Generating the number of Paths depending on the number of miscleavages

Issue - State: closed - Opened by Luxxii about 4 years ago - 2 comments
Labels: enhancement

#2 - Bug? Edges can go directly from start to end

Issue - State: closed - Opened by Luxxii about 4 years ago - 1 comment
Labels: bug

#1 - Development into Master

Pull Request - State: closed - Opened by Luxxii about 4 years ago