motiwari/BanditPAM issues and pull requests

#272 - Undefined symbol

Issue - State: open - Opened by theofn 4 months ago

#271 - Add Spearman and Pearson correlation metrics implementation

Pull Request - State: open - Opened by dasvision0212 12 months ago - 1 comment

#270 - Fix return type for `get_medoids_final()` and expose `get_labels()`

Pull Request - State: closed - Opened by bnaras over 1 year ago - 1 comment

#269 - `v4.0.4` Windows GHA Changes

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#269 - `v4.0.4` Windows GHA Changes

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#268 - `v4.0.4`

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#268 - `v4.0.4`

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#267 - `v4.0.3` Style Changes

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#267 - `v4.0.3` Style Changes

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#266 - R package: Make it possible to disable parallelization

Pull Request - State: open - Opened by mikldk over 1 year ago - 2 comments

#265 - Race condition when calculating the loss

Issue - State: open - Opened by lukeleeai over 1 year ago

#264 - Unpredictable Performance with Parallelization Enabled on ScRNA Dataset

Issue - State: open - Opened by lukeleeai over 1 year ago

#263 - pip install banditpam error

Issue - State: open - Opened by KeyCode17 over 1 year ago - 9 comments

#262 - v4.0.3 Functionality

Pull Request - State: closed - Opened by Adarsh321123 over 1 year ago - 1 comment

#261 - Resolved testing failures in BanditPAM++

Pull Request - State: closed - Opened by lukeleeai over 1 year ago - 3 comments

#260 - Fixed Loss Mismatch Issues in BanditPAM

Pull Request - State: closed - Opened by lukeleeai over 1 year ago - 2 comments

#259 - Upload M1 Mac wheels to TestPyPI and PyPI

Issue - State: open - Opened by Adarsh321123 over 1 year ago

#258 - Need GHA to build wheels for Windows and push to PyPI + GHA to build package and run tests on Windows

Issue - State: open - Opened by Adarsh321123 over 1 year ago
Labels: v4.0.4

#257 - Include OpenMP support on Windows

Issue - State: open - Opened by motiwari over 1 year ago - 1 comment
Labels: v4.0.4

#256 - Change github actions that upload wheels to upload to TestPyPI on PR update, and PyPI on release

Issue - State: closed - Opened by motiwari over 1 year ago
Labels: v4.0.3

#255 - Minor performance difference between BanditPAM and sklearn for a small number of data points

Issue - State: open - Opened by lukeleeai over 1 year ago

#254 - Fixed Loss and Sample Complexity Issues in BanditPAM

Pull Request - State: closed - Opened by lukeleeai over 1 year ago - 1 comment

#253 - BanditPAM is slower than sklearn

Issue - State: closed - Opened by lukeleeai over 1 year ago

#252 - User report: algorithm choosing wrong arms (correctness)

Issue - State: closed - Opened by motiwari over 1 year ago - 8 comments

#251 - Link to full paper with appendices in `README.md`

Issue - State: open - Opened by motiwari almost 2 years ago

#250 - New error in GHA

Issue - State: closed - Opened by motiwari almost 2 years ago

#249 - Cannot build locally with `conda` `python` due to `x86_64` vs. `arm64` mismatch

Issue - State: open - Opened by motiwari almost 2 years ago

#248 - Add citation to "About" section of repo

Issue - State: open - Opened by motiwari almost 2 years ago

#247 - Upload wheels to conda

Issue - State: open - Opened by motiwari almost 2 years ago

#246 - BanditPAM v4.0.2

Pull Request - State: closed - Opened by Adarsh321123 almost 2 years ago - 2 comments

#245 - fix typo in setup.py

Pull Request - State: open - Opened by eltociear almost 2 years ago - 1 comment

#244 - Bug Report: Slower than k-means on `n=10,000` moon dataset

Issue - State: open - Opened by motiwari almost 2 years ago

#243 - cannot pickle 'banditpam.KMedoids' object

Issue - State: open - Opened by afaghiri almost 2 years ago - 3 comments
Labels: feature

#242 - pip install on windows doesn't use MS Visual C++ compiler

Issue - State: closed - Opened by Dobatymo almost 2 years ago - 1 comment

#241 - BanditPAM `v4.0.1`

Pull Request - State: closed - Opened by motiwari almost 2 years ago - 1 comment

#240 - Make `R_package` subdirectory lint-compliant

Issue - State: open - Opened by motiwari almost 2 years ago

#239 - CRAN submission

Pull Request - State: closed - Opened by bnaras almost 2 years ago - 1 comment

#238 - Standardize `banditpam` across URL and all code

Issue - State: open - Opened by motiwari almost 2 years ago

#237 - CRAN-ready R Package

Pull Request - State: closed - Opened by bnaras almost 2 years ago - 1 comment

#236 - R pkg

Pull Request - State: closed - Opened by bnaras almost 2 years ago - 1 comment

#235 - `max_iter` not being passed correctly from Python

Issue - State: closed - Opened by motiwari almost 2 years ago - 1 comment

#234 - Implement `buildLoss` function

Issue - State: closed - Opened by motiwari almost 2 years ago

#233 - Upload banditpam to anaconda channels

Issue - State: open - Opened by motiwari almost 2 years ago

#232 - Change `exact` in `buildTarget` and `swapTarget` to bool

Issue - State: closed - Opened by motiwari almost 2 years ago

#231 - Make sure all calls to `calcLoss` are the correct order

Issue - State: open - Opened by motiwari almost 2 years ago

#230 - Cmake issue

Issue - State: closed - Opened by SehongOh almost 2 years ago - 13 comments

#229 - Change final calls of `calcBestDistancesSwap(..., swapPerformed=false)` to `calcLoss`

Issue - State: open - Opened by motiwari almost 2 years ago

#228 - FastPAM1 is broken

Issue - State: closed - Opened by motiwari almost 2 years ago

#227 - Don't perform any swaps if k=1

Issue - State: closed - Opened by motiwari almost 2 years ago

#226 - Separate parameters and settings semantically

Issue - State: open - Opened by motiwari almost 2 years ago

#225 - Have a null constructor that only requires passing `k`

Issue - State: open - Opened by motiwari almost 2 years ago

#224 - Add status badges

Issue - State: closed - Opened by motiwari almost 2 years ago

#223 - Fix readthedocs link in README

Issue - State: open - Opened by motiwari almost 2 years ago

#222 - Document OMP functrions

Issue - State: open - Opened by motiwari almost 2 years ago

#221 - #include carma only for Python

Issue - State: open - Opened by motiwari almost 2 years ago

#220 - Possible clashing of compiler opts

Issue - State: open - Opened by motiwari almost 2 years ago

#219 - Fix compiler flags

Issue - State: open - Opened by motiwari almost 2 years ago

#218 - When compiling mac wheels, add `'-framework Accelerate'` to compiler flags

Issue - State: open - Opened by motiwari almost 2 years ago

#217 - Address sanitizer detects memory leaks with `new` for `cache`

Issue - State: open - Opened by motiwari almost 2 years ago

#216 - Make an enum for sample complexity category

Issue - State: open - Opened by motiwari almost 2 years ago

#215 - Clean up scripts in `scripts`

Issue - State: open - Opened by motiwari almost 2 years ago

#214 - Implement `getTotalSwapTime` and `getTimePerSwap`

Issue - State: open - Opened by motiwari almost 2 years ago

#213 - Make sure wheels aren't being built with `-g` flag

Issue - State: open - Opened by motiwari almost 2 years ago

#212 - Some compiler flags are duplicated

Issue - State: open - Opened by motiwari almost 2 years ago

#211 - Bug when `max_iter=1` is passed

Issue - State: open - Opened by motiwari almost 2 years ago

#210 - Refactor code to make C++ code in top-level and each language binding in subdirectories

Issue - State: open - Opened by motiwari about 2 years ago

#209 - Transitioning to a single code base for R/Python

Issue - State: open - Opened by bnaras about 2 years ago

#208 - Implement a `make clean`

Issue - State: open - Opened by motiwari about 2 years ago

#207 - User report: docker installation instructions in `README` are incomplete

Issue - State: open - Opened by motiwari about 2 years ago

#206 - Fix platform-specific guide links in `README`

Issue - State: open - Opened by motiwari about 2 years ago

#205 - Easily compare the effects of cache and permutation with flags

Pull Request - State: open - Opened by lukeleeai about 2 years ago - 1 comment

#204 - Idea: from first batch of ref points in each swap step, only keep track of best medoid to flip with (probably the one it's assigned to?)

Issue - State: open - Opened by motiwari about 2 years ago

#203 - Both `main` and `slowdown` branches appear to be nondeterministic unless number of threads is set to 1

Issue - State: open - Opened by motiwari about 2 years ago

#202 - Stop SWAP steps after they improve loss by less than some threshold $t$ (e.g., 0.1%)

Issue - State: open - Opened by motiwari about 2 years ago

#201 - Allow for $\epsilon$-suboptimal arms

Issue - State: open - Opened by motiwari about 2 years ago

#200 - Need to ensure `k` elements broadcasting to for each arm are laid out contiguously in memory (after `slowdown` merge)

Issue - State: open - Opened by motiwari about 2 years ago

#199 - minor fix

Pull Request - State: closed - Opened by motiwari about 2 years ago - 1 comment

#198 - `useCacheP=True` & `usePerm=False` runs slower than BanditPAM with no caching when the dataset is large

Issue - State: open - Opened by lukeleeai over 2 years ago

#197 - Upgrade `carma`

Issue - State: open - Opened by motiwari over 2 years ago

#196 - Update `README.md`

Issue - State: open - Opened by motiwari over 2 years ago

#195 - Might save a factor of 2: in first batch, for arms in which CIs are wide compared to delta mean, predict that we'll need to compute exactly and do so

Issue - State: open - Opened by motiwari over 2 years ago

#194 - Fix link to examples on `README`

Issue - State: open - Opened by motiwari over 2 years ago

#193 - Need to compile wheels for other architectures for manylinux

Issue - State: open - Opened by motiwari over 2 years ago

#192 - Testing slack notifications 2

Issue - State: closed - Opened by motiwari over 2 years ago

#191 - Testing slack notifications

Issue - State: closed - Opened by motiwari over 2 years ago

#190 - Categorical features in banditPAM

Issue - State: closed - Opened by retzerjj over 2 years ago - 1 comment

#189 - Undefined symbol

Issue - State: open - Opened by SergioG-M over 2 years ago

#188 - Missing data files

Issue - State: closed - Opened by rheinonen over 2 years ago - 1 comment

#187 - Attempting to resolve build issues on some M1 Macs

Pull Request - State: open - Opened by motiwari over 2 years ago

#186 - Fix readthedocs link on `README.md`

Issue - State: open - Opened by motiwari almost 3 years ago

#185 - predict function for Python implementation?

Issue - State: open - Opened by m-muaz almost 3 years ago - 3 comments

#184 - BanditPAM `v3.0.4`

Pull Request - State: closed - Opened by motiwari almost 3 years ago

#183 - BanditPAM v4.0.0

Pull Request - State: closed - Opened by motiwari almost 3 years ago

#182 - cosine similarity vs cosine distance

Issue - State: closed - Opened by tazitoo almost 3 years ago - 3 comments

#181 - BanditPAM `v3.0.3`

Pull Request - State: closed - Opened by motiwari about 3 years ago

#180 - BanditPAM `v3.0.3`

Pull Request - State: closed - Opened by motiwari about 3 years ago - 1 comment

#179 - Much Slower than Scikit-Learn kMedoids on Large Dimensions

Issue - State: closed - Opened by kayuksel about 3 years ago - 2 comments

#178 - BanditPAM `v3.0.2`

Pull Request - State: closed - Opened by motiwari about 3 years ago

#177 - Update "full suite of tests" command

Issue - State: closed - Opened by motiwari about 3 years ago - 1 comment

#176 - Allow choosing the random seed (from python)

Issue - State: closed - Opened by kno10 about 3 years ago - 2 comments

GitHub / motiwari/BanditPAM issues and pull requests