moshi4/pyGenomeViz issues and pull requests

#75 - sequences have been observed side-by-side, not one under others

Issue - State: closed - Opened by dvmbtk about 1 month ago - 1 comment
Labels: question

#74 - Bump to v1.5.0

Pull Request - State: closed - Opened by moshi4 about 1 month ago

#74 - Bump to v1.5.0

Pull Request - State: closed - Opened by moshi4 about 1 month ago

#73 - Multiple segments from different contigs into same track

Issue - State: closed - Opened by juliaped about 2 months ago - 1 comment
Labels: question

#72 - Bump to v1.4.2

Pull Request - State: closed - Opened by moshi4 2 months ago

#71 - Demo page is down

Issue - State: closed - Opened by mjamy 3 months ago - 1 comment
Labels: question

#71 - Demo page is down

Issue - State: closed - Opened by mjamy 3 months ago - 1 comment

#70 - Break the segment without gene features

Issue - State: closed - Opened by chtsai0105 3 months ago - 3 comments
Labels: question

#69 - No module named 'pygenomeviz'

Issue - State: closed - Opened by dplazas 3 months ago - 2 comments
Labels: question

#68 - fix: add track offset for segment separators

Pull Request - State: closed - Opened by msdyachkova 3 months ago - 1 comment

#67 - Arrow size

Issue - State: closed - Opened by woodoo46 3 months ago - 2 comments
Labels: question

#66 - progressiveMauve alignment fails

Issue - State: closed - Opened by uzunmasha 4 months ago - 2 comments
Labels: question

#65 - Bump to v1.4.1

Pull Request - State: closed - Opened by moshi4 4 months ago

#64 - Genome alignment visualization causes error when using gz compressed files

Issue - State: closed - Opened by erinyoung 4 months ago - 2 comments
Labels: bug

#63 - File encoding errors on Windows

Issue - State: closed - Opened by phyto 4 months ago - 2 comments
Labels: bug

#62 - Bump to v1.4.0

Pull Request - State: closed - Opened by moshi4 5 months ago

#61 - adding different annotations in the hover screen in html

Issue - State: closed - Opened by dadush1 5 months ago - 2 comments
Labels: question

#60 - Demo Page app is not running

Issue - State: closed - Opened by Akelatarek 5 months ago - 1 comment
Labels: question

#59 - Demo Page is down

Issue - State: closed - Opened by MilagrosLG 5 months ago - 2 comments
Labels: question

#58 - MMseqs RBH gui issue

Issue - State: closed - Opened by iaindhay 6 months ago - 2 comments
Labels: bug

#57 - Bump to v1.3.0

Pull Request - State: closed - Opened by moshi4 6 months ago

#56 - segments need better documentation

Issue - State: closed - Opened by diekhans 6 months ago - 1 comment
Labels: documentation

#55 - support annotations stacked more thant two deep

Issue - State: closed - Opened by diekhans 6 months ago - 1 comment
Labels: question

#54 - `feature.location.strand` raises NoneType object AttributeError in WebApp

Issue - State: closed - Opened by ilaydagulmez 6 months ago - 5 comments
Labels: bug

#53 - Bump to v1.2.0

Pull Request - State: closed - Opened by moshi4 7 months ago

#52 - How to plot discrete colorbar for link identity?

Issue - State: closed - Opened by AThivolle 7 months ago - 1 comment
Labels: question

#51 - How to show y-axis of subtracks?

Issue - State: closed - Opened by phyto 7 months ago - 1 comment
Labels: question

#50 - Representation of enhancer links

Issue - State: closed - Opened by r-trimbour 7 months ago - 1 comment
Labels: question

#49 - how to parse exon features in new pyGenomeViz version?

Issue - State: closed - Opened by KewinOgink 7 months ago - 2 comments
Labels: question

#48 - RBH value when using mmseqs rbh

Issue - State: closed - Opened by iaindhay 7 months ago - 1 comment
Labels: question

#47 - Tooltips not displayed in HTML viewer

Issue - State: closed - Opened by phyto 7 months ago - 3 comments
Labels: question

#46 - Plot genome comparison links from an existing `align_coords.tsv`

Issue - State: closed - Opened by amara86 8 months ago - 1 comment
Labels: question

#45 - Genome comparison visualization using fasta file

Issue - State: closed - Opened by amara86 8 months ago - 1 comment
Labels: question

#44 - Why pgv-pmauve doesn't report identity value

Issue - State: closed - Opened by Rohit-Satyam 8 months ago - 1 comment
Labels: question

#43 - display portion of contig from multi-record Genbank files

Issue - State: closed - Opened by phyto 8 months ago - 1 comment
Labels: question

#42 - Bump to v1.1.0

Pull Request - State: closed - Opened by moshi4 8 months ago

#41 - Request to Retain Previous Version Tutorials

Issue - State: closed - Opened by Dx-wmc 9 months ago - 4 comments
Labels: documentation

#40 - Major Upgrade v1.0.0

Pull Request - State: closed - Opened by moshi4 9 months ago

#39 - How to make the link between two tracks instead of two genes

Issue - State: closed - Opened by Dx-wmc 9 months ago - 3 comments
Labels: question

#38 - Cannot visualise rRNA units from gff file

Issue - State: closed - Opened by Edouard94 9 months ago - 3 comments
Labels: question

#36 - GFF subtracks with feature track sub-intervals?

Issue - State: closed - Opened by mkarikom 10 months ago - 5 comments
Labels: question

#35 - can't add GFF features from object with min_range > 0

Issue - State: closed - Opened by mkarikom 10 months ago - 2 comments
Labels: question

#32 - Python API changing plot coordinates

Issue - State: closed - Opened by mcn3159 12 months ago - 7 comments
Labels: question

#31 - Issue with visualize.py Script Execution Leading to ValueError

Issue - State: closed - Opened by ZiliaMR 12 months ago - 8 comments
Labels: question

#29 - AttributeError: 'SeqFeature' object has no attribute 'strand'

Issue - State: closed - Opened by biogeeker about 1 year ago - 2 comments
Labels: question

#27 - BioPython genbank records

Issue - State: closed - Opened by sejmodha over 1 year ago - 6 comments
Labels: question

#26 - Bump to v0.4.4

Pull Request - State: closed - Opened by moshi4 over 1 year ago

#25 - Drawing alternative tracks

Issue - State: closed - Opened by evsru over 1 year ago - 2 comments
Labels: question

#24 - function to specify hatch patterns

Issue - State: closed - Opened by sejmodha over 1 year ago - 2 comments
Labels: question

#23 - Bump to v0.4.3

Pull Request - State: closed - Opened by moshi4 over 1 year ago

#22 - run error pygenomeviz

Issue - State: closed - Opened by sekhwal over 1 year ago - 3 comments
Labels: bug

#21 - How can I skip a genomic segment in the plot?

Issue - State: closed - Opened by SentientVirus over 1 year ago - 2 comments
Labels: enhancement

#20 - how to change x ticks start and number?

Issue - State: closed - Opened by KewinOgink over 1 year ago - 2 comments
Labels: question

#19 - Bump to v0.4.2

Pull Request - State: closed - Opened by moshi4 over 1 year ago

#18 - Load custom dataset gbk

Issue - State: closed - Opened by GM110Z over 1 year ago - 4 comments
Labels: question

#17 - Error running app.

Issue - State: closed - Opened by edwardb6 over 1 year ago - 1 comment
Labels: question

#16 - Bump to v0.4.1

Pull Request - State: closed - Opened by moshi4 over 1 year ago

#15 - Bump to v0.4.0

Pull Request - State: closed - Opened by moshi4 over 1 year ago

#14 - Some extra ideas: new features

Issue - State: closed - Opened by Dx-wmc over 1 year ago - 5 comments
Labels: enhancement

#13 - pmauve crash on WSL with Fix

Issue - State: closed - Opened by Talmonre almost 2 years ago - 2 comments
Labels: question

#12 - Can this align multiple chromosomes ?

Issue - State: closed - Opened by gunjanpandey about 2 years ago - 7 comments
Labels: enhancement

#9 - Not able to get the Y-axis scale for GC content plot

Issue - State: closed - Opened by Meghuser about 2 years ago - 1 comment
Labels: question

#8 - minimum identity and MUMmer

Issue - State: closed - Opened by kneubehl about 2 years ago - 2 comments
Labels: question

#7 - Pseudogene arrows are not plotted in pgv-mummer

Issue - State: closed - Opened by kneubehl about 2 years ago - 6 comments
Labels: enhancement

#6 - Aborted (core dumped)

Issue - State: closed - Opened by sajjadasaf over 2 years ago - 2 comments
Labels: question

#4 - issue with Aug 2, 2022 update

Issue - State: closed - Opened by HillLabSask over 2 years ago
Labels: invalid

#2 - different color genes for different genomes

Issue - State: closed - Opened by madhubioinfo over 2 years ago - 1 comment
Labels: question

#1 - Develop

Pull Request - State: closed - Opened by moshi4 over 2 years ago

GitHub / moshi4/pyGenomeViz issues and pull requests