Ecosyste.ms: Issues

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GitHub / morteza/thesis issues and pull requests

#145 - Reproduce the results using west2020 resting dataset

Issue - State: closed - Opened by morteza over 2 years ago

#145 - Reproduce the results using west2020 resting dataset

Issue - State: closed - Opened by morteza over 2 years ago

#144 - Reduce repo size (on GH and Uni GL)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#144 - Reduce repo size (on GH and Uni GL)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#115 - Describe SHAP interpretation (hit vs miss)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#115 - Describe SHAP interpretation (hit vs miss)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#112 - Update feature importance figure (same scale)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#112 - Update feature importance figure (same scale)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#111 - Revise acnets intro section (thesis-draft-v4)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#111 - Revise acnets intro section (thesis-draft-v4)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#110 - Fix seitzman2018 coordinates and network names

Issue - State: closed - Opened by morteza over 2 years ago
Labels: bug

#110 - Fix seitzman2018 coordinates and network names

Issue - State: closed - Opened by morteza over 2 years ago
Labels: bug

#109 - Revise results section (draft-v4)

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#109 - Revise results section (draft-v4)

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#108 - Rerun pipeline with difumo-yeo17 networks

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#107 - Revise Methods & Results sections (draft-v3)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#106 - Draft a quick slides deck for west2020 (or highlight the paper)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#106 - Draft a quick slides deck for west2020 (or highlight the paper)

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#105 - Review "Data In Brief" and "MethodsX" templates

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#105 - Review "Data In Brief" and "MethodsX" templates

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#104 - Share "Parcellation Overlaps" document with Daphne and Julia

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#104 - Share "Parcellation Overlaps" document with Daphne and Julia

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#102 - Show gordon-dosenbach overlaps

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: enhancement

#102 - Show gordon-dosenbach overlaps

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: enhancement

#101 - Review Gaël Varoquaux (2020) in hope to resolve covariance issue

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: bug, duplicate

#100 - Redraw dosenbach2010 coordinates using nilearn plot_markers

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#100 - Redraw dosenbach2010 coordinates using nilearn plot_markers

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#99 - Replot SHAP for all the top N models

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#99 - Replot SHAP for all the top N models

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#98 - Confirm DiFuMu region->network mappings

Issue - State: closed - Opened by morteza over 2 years ago
Labels: question

#98 - Confirm DiFuMu region->network mappings

Issue - State: closed - Opened by morteza over 2 years ago
Labels: question

#97 - Confirm DiFuMu ROIs

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: question

#97 - Confirm DiFuMu ROIs

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: question

#96 - Create a document showing Dosenbach-Gordon ROI mappings

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#96 - Create a document showing Dosenbach-Gordon ROI mappings

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#95 - Save analysis plots as editable SVG

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#95 - Save analysis plots as editable SVG

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#94 - Revise ACNets outline

Issue - State: closed - Opened by morteza over 2 years ago

#94 - Revise ACNets outline

Issue - State: closed - Opened by morteza over 2 years ago

#93 - Review west2020

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#93 - Review west2020

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#92 - Prepare ACNets folder on GDrive for sharing

Issue - State: closed - Opened by morteza over 2 years ago

#92 - Prepare ACNets folder on GDrive for sharing

Issue - State: closed - Opened by morteza over 2 years ago

#91 - Add Seitzman2020 parcellation

Issue - State: closed - Opened by morteza over 2 years ago
Labels: epic

#91 - Add Seitzman2020 parcellation

Issue - State: closed - Opened by morteza over 2 years ago
Labels: epic

#90 - Plot atlas ROIs on MNI152

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: duplicate

#90 - Plot atlas ROIs on MNI152

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: duplicate

#89 - Read and apply NeuroImage author guide

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#89 - Read and apply NeuroImage author guide

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#86 - Explain cross-validation in details

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#86 - Explain cross-validation in details

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#85 - Report SVM coefficients

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation, enhancement

#85 - Report SVM coefficients

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation, enhancement

#84 - Add legends to the Bayesian plots

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#84 - Add legends to the Bayesian plots

Issue - State: closed - Opened by morteza over 2 years ago
Labels: enhancement

#83 - Add ethics statement

Issue - State: closed - Opened by morteza over 2 years ago - 2 comments
Labels: documentation

#83 - Add ethics statement

Issue - State: closed - Opened by morteza over 2 years ago - 2 comments
Labels: documentation

#82 - Update Figure 3 (Feature Importance)

Issue - State: closed - Opened by morteza over 2 years ago

#82 - Update Figure 3 (Feature Importance)

Issue - State: closed - Opened by morteza over 2 years ago

#81 - Add brain atlas figures to the supplementary-1

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#81 - Add brain atlas figures to the supplementary-1

Issue - State: closed - Opened by morteza over 2 years ago
Labels: documentation

#80 - Update Figure 1 (Pipeline)

Issue - State: closed - Opened by morteza over 2 years ago

#80 - Update Figure 1 (Pipeline)

Issue - State: closed - Opened by morteza over 2 years ago

#79 - Diagnose low accuracy in dosenbach2010-covariance

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: bug, question

#77 - Update Figure supp-1 (misclassified SHAP)

Issue - State: closed - Opened by morteza over 2 years ago

#75 - UI to visualize and compare atlases

Issue - State: closed - Opened by morteza over 2 years ago - 1 comment
Labels: documentation

#74 - Write about motivations to use the parcellation maps

Issue - State: closed - Opened by morteza over 2 years ago

#64 - Read "On Task" (David Badre) for CC clarifications

Issue - State: closed - Opened by morteza about 2 years ago

#64 - Read "On Task" (David Badre) for CC clarifications

Issue - State: closed - Opened by morteza about 2 years ago

#63 - Draft "information sheet" section in the general intro (v1)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#63 - Draft "information sheet" section in the general intro (v1)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#62 - Rewrite the "challenges" section in the general intro (v3)

Issue - State: closed - Opened by morteza about 2 years ago

#62 - Rewrite the "challenges" section in the general intro (v3)

Issue - State: closed - Opened by morteza about 2 years ago

#61 - Rewrite the "challenges" section in the general intro (v2)

Issue - State: closed - Opened by morteza about 2 years ago

#61 - Rewrite the "challenges" section in the general intro (v2)

Issue - State: closed - Opened by morteza about 2 years ago

#60 - draft-v3 (google docs)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#60 - draft-v3 (google docs)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#59 - redraw thesis structure figure

Issue - State: closed - Opened by morteza about 2 years ago

#59 - redraw thesis structure figure

Issue - State: closed - Opened by morteza about 2 years ago

#58 - Combine two parts into a single 5-chapter structure

Issue - State: closed - Opened by morteza about 2 years ago

#58 - Combine two parts into a single 5-chapter structure

Issue - State: closed - Opened by morteza about 2 years ago

#57 - Rewrite the "challenges" section in the general intro

Issue - State: closed - Opened by morteza about 2 years ago

#57 - Rewrite the "challenges" section in the general intro

Issue - State: closed - Opened by morteza about 2 years ago

#56 - resolve mismatched training accuracy in NB when eval=True

Issue - State: closed - Opened by morteza about 2 years ago
Labels: bug

#56 - resolve mismatched training accuracy in NB when eval=True

Issue - State: closed - Opened by morteza about 2 years ago
Labels: bug

#55 - ***Remind Pedro every day to organize jury and admin stuff***

Issue - State: closed - Opened by morteza about 2 years ago

#55 - ***Remind Pedro every day to organize jury and admin stuff***

Issue - State: closed - Opened by morteza about 2 years ago

#54 - Review CC features (see notes)

Issue - State: closed - Opened by morteza about 2 years ago - 3 comments
Labels: documentation

#54 - Review CC features (see notes)

Issue - State: closed - Opened by morteza about 2 years ago - 3 comments
Labels: documentation

#53 - Compile a new draft (90%; v2)

Issue - State: closed - Opened by morteza about 2 years ago

#53 - Compile a new draft (90%; v2)

Issue - State: closed - Opened by morteza about 2 years ago

#52 - CET4 final slides (v2)

Issue - State: closed - Opened by morteza about 2 years ago

#52 - CET4 final slides (v2)

Issue - State: closed - Opened by morteza about 2 years ago

#51 - Outline for the general introduction

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#51 - Outline for the general introduction

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#50 - Fix paper 4 headings in the "chapters" folder

Issue - State: closed - Opened by morteza about 2 years ago

#50 - Fix paper 4 headings in the "chapters" folder

Issue - State: closed - Opened by morteza about 2 years ago

#49 - Plagiarism check (Sep 21 draft)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#49 - Plagiarism check (Sep 21 draft)

Issue - State: closed - Opened by morteza about 2 years ago
Labels: documentation

#48 - Draft "Future direction" for the "General Discussions" section

Issue - State: closed - Opened by morteza about 2 years ago