Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / mooreryan/iroki issues and pull requests

#131 - Bump globalid from 0.4.2 to 1.0.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#130 - Bump rack from 2.2.3 to 2.2.6.2

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#129 - Bump loofah from 2.4.0 to 2.19.1

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#128 - Bump addressable from 2.7.0 to 2.8.1

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#127 - Bump tzinfo from 1.2.5 to 1.2.10

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#126 - Bump rails-html-sanitizer from 1.3.0 to 1.4.3

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#125 - Bump rack from 2.2.3 to 2.2.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#124 - Bar color with no bar height doesn't work

Issue - State: open - Opened by mooreryan over 2 years ago
Labels: enhancement, mapping file

#123 - Bump puma from 3.12.6 to 4.3.12

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#122 - Arc drawing on circular phylogenies not working

Issue - State: open - Opened by SidG13 over 2 years ago - 2 comments

#121 - Include functionality for all ColorBrewer palettes

Issue - State: closed - Opened by SidG13 over 2 years ago - 1 comment

#120 - Bump puma from 3.12.6 to 4.3.11

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#119 - Better warning messages when uploading mulitple trees in one newick file

Issue - State: open - Opened by mooreryan almost 3 years ago
Labels: enhancement, newick tree, usability

#118 - Bump puma from 3.12.6 to 4.3.9

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#117 - Bump nokogiri from 1.10.9 to 1.12.5

Pull Request - State: open - Opened by dependabot[bot] about 3 years ago
Labels: dependencies

#116 - __IROKI_BLANK__ doesn't work on leaf_dot_color option

Issue - State: open - Opened by mooreryan over 3 years ago
Labels: mapping file, documentation

#115 - Bump addressable from 2.7.0 to 2.8.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#114 - Bump puma from 3.12.6 to 4.3.8

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#113 - Bump nokogiri from 1.10.9 to 1.11.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#112 - Bootstrap support label cutoff

Issue - State: closed - Opened by seanmcallister over 3 years ago - 1 comment

#110 - Scaled val and val get logged to console in production app

Issue - State: open - Opened by mooreryan over 4 years ago
Labels: bug

#109 - When viewing dots with no leaf labels, you can't align the dots

Issue - State: open - Opened by mooreryan over 4 years ago
Labels: bug

#108 - Add text input boxes to fields that only have sliders

Issue - State: open - Opened by mooreryan over 4 years ago
Labels: enhancement, usability

#107 - Bump rack from 2.0.7 to 2.1.4

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#106 - Link to github on Iroki.net front page

Issue - State: open - Opened by seanmcallister over 4 years ago - 2 comments
Labels: documentation

#105 - Bump websocket-extensions from 0.1.4 to 0.1.5

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#104 - Bump puma from 3.12.1 to 3.12.6

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#103 - Bars alignment bug when switching between true length and cladogram

Issue - State: open - Opened by mooreryan over 4 years ago - 1 comment
Labels: bug

#102 - Tree resubmission bug

Issue - State: open - Opened by mooreryan over 4 years ago
Labels: bug

#101 - Bump puma from 3.12.1 to 3.12.4

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#100 - Bump puma from 3.12.1 to 3.12.3

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#99 - Add graphical abstract to OG image and twitter cards

Issue - State: open - Opened by mooreryan over 4 years ago
Labels: enhancement

#98 - Bump nokogiri from 1.10.5 to 1.10.8

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#96 - Bars should not be allowed on radial trees

Issue - State: open - Opened by mooreryan over 4 years ago

#95 - Bars gone, but bar axis still there

Issue - State: closed - Opened by mooreryan almost 5 years ago - 1 comment

#94 - If bars are shown, you shouldn't be able to unalign tip labels

Issue - State: closed - Opened by mooreryan almost 5 years ago - 1 comment

#93 - With blank leaf label, and 0 radius leaf dot, when you click align tip decorations, don't draw the dotted line.

Issue - State: closed - Opened by mooreryan almost 5 years ago - 1 comment
Labels: enhancement

#92 - Bump rack from 2.0.7 to 2.0.8

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#91 - Bump puma from 3.12.1 to 3.12.2

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#90 - Bump rack from 2.0.5 to 2.0.7

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 2 comments
Labels: dependencies

#89 - Bump loofah from 2.2.3 to 2.3.1

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 2 comments
Labels: dependencies

#88 - Bump nokogiri from 1.8.5 to 1.10.4

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 2 comments
Labels: dependencies

#87 - Increasing size/resolution of PNG exports

Issue - State: closed - Opened by mooreryan about 5 years ago - 1 comment
Labels: enhancement, question, usability

#86 - Invalid fonts in the mapping file

Issue - State: open - Opened by mooreryan over 5 years ago
Labels: mapping file, usability

#85 - Submitting a new mapping file resets all user opts

Issue - State: open - Opened by mooreryan over 5 years ago - 1 comment
Labels: enhancement, mapping file, usability

#84 - PD table headers are missing Faith's

Issue - State: open - Opened by mooreryan over 5 years ago

#83 - PD calculator newline problems

Issue - State: open - Opened by mooreryan over 5 years ago

#82 - Empty lines mess up biom converter parsing

Issue - State: open - Opened by mooreryan over 5 years ago
Labels: bug, biom

#81 - Output params for the biom converter

Issue - State: open - Opened by mooreryan over 5 years ago
Labels: enhancement, usability, biom

#80 - Bug with pos/neg bars with all positive bars

Issue - State: closed - Opened by mooreryan over 5 years ago - 1 comment

#79 - Bar axis issue when using fold change style

Issue - State: closed - Opened by mooreryan over 5 years ago - 1 comment

#78 - Bar angles are controlled by leaf label rotation slider

Issue - State: closed - Opened by mooreryan over 5 years ago
Labels: bug, tree styling

#77 - Label rotation bug

Issue - State: closed - Opened by mooreryan over 5 years ago - 1 comment
Labels: bug, tree styling

#76 - Issue with saving tree image

Issue - State: open - Opened by prasanjoglekar almost 6 years ago - 1 comment

#75 - Mapping file with missing data bug

Issue - State: open - Opened by mooreryan almost 6 years ago
Labels: bug, mapping file

#74 - Interesting parsing error

Issue - State: open - Opened by mooreryan almost 6 years ago
Labels: bug

#73 - Iroki scale bar bug

Issue - State: open - Opened by aoharrison almost 6 years ago
Labels: bug, tree styling

#72 - Bootstrap dot filling

Issue - State: open - Opened by seanmcallister almost 6 years ago

#71 - Color blind palettes

Issue - State: closed - Opened by mooreryan about 6 years ago - 1 comment
Labels: enhancement, mapping file, tree styling, biom

#70 - NaN scale bar bug

Issue - State: open - Opened by mooreryan about 6 years ago - 2 comments
Labels: bug, newick tree

#69 - Minimum scale bar length size is confusing

Issue - State: closed - Opened by mooreryan about 6 years ago - 1 comment
Labels: enhancement, newick tree, tree styling

#68 - In cladogram mode...

Issue - State: closed - Opened by mooreryan about 6 years ago - 1 comment
Labels: enhancement, newick tree

#67 - If you have a blank line in the mapping file....

Issue - State: open - Opened by mooreryan about 6 years ago - 2 comments
Labels: bug, mapping file

#66 - Iroki biom converter needs at least 2 data columns to work properly.

Issue - State: closed - Opened by mooreryan about 6 years ago - 1 comment
Labels: bug, biom

#65 - Automatic label font styling

Issue - State: open - Opened by mooreryan over 6 years ago
Labels: enhancement, mapping file, tree styling

#64 - Problems with sequence numeric names starting with 0

Issue - State: closed - Opened by seanmcallister over 6 years ago - 4 comments

#63 - Mean across non-zero counts

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, biom

#62 - Palette mode with legend

Issue - State: open - Opened by mooreryan over 6 years ago
Labels: enhancement, biom

#61 - Evenness and two sample biom file

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, biom

#60 - Chroma/saturation with magnitude issue

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, biom

#59 - Luminance doesn't quite match up with lightness

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: enhancement, biom

#58 - Dimension reduction and evenness

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, biom

#57 - Row separators have disappeared from the biom upload form

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, layout

#56 - When doing dimension reduction on the biom file, the legend is wonky

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: biom

#55 - Weird chars output by the biom to color map converter

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, mapping file, biom

#54 - Need to output some sort of legend with the biom to color map converter.

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: enhancement, biom

#53 - Mapping file options lock the option panel

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, mapping file, tree styling

#52 - The same error messages pop up after resizing a tree

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, newick tree

#51 - This error message pops up multiple times per tree.

Issue - State: closed - Opened by mooreryan over 6 years ago - 1 comment
Labels: bug, newick tree, mapping file

#50 - Partial mapping might be confusing

Issue - State: closed - Opened by mooreryan almost 7 years ago - 2 comments
Labels: enhancement, mapping file

#49 - Should strip whitespace from start and end of the name column in the name map

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: bug, mapping file

#48 - Bootstrap support cutoffs

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: bug, newick tree, tree styling, usability

#47 - Radial trees not rooted on the leaf, and bio root unchecked shouldn't have root dot

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: bug, tree styling

#46 - Serve the d3 from iroki website rather than wait on it from d3

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, usability

#45 - A button to reset just the the mapping/coloring options.

Issue - State: open - Opened by mooreryan almost 7 years ago
Labels: enhancement, tree styling

#44 - Label rotation slider issue

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, tree styling, usability

#43 - Separate inner and leaf label color

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, tree styling

#42 - Separate inner and leaf label font

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, tree styling

#41 - Two ' chars in a row should parse to a single ' within a name

Issue - State: open - Opened by mooreryan almost 7 years ago
Labels: enhancement, newick tree

#40 - If newick__parse returns null, don't keep the rendering tree message

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: bug, newick tree

#37 - Usability suggestions

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, usability

#36 - Cite these papers

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: manuscript

#34 - A bunch of tree styling suggestions

Issue - State: open - Opened by mooreryan almost 7 years ago - 3 comments
Labels: enhancement, tree styling

#33 - Separate inner and leaf dot colors

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, tree styling

#28 - Hex codes in mapping file without '#' are invalid

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: enhancement, mapping file

#26 - Trees with illegal characters in leaf names

Issue - State: closed - Opened by mooreryan almost 7 years ago - 1 comment
Labels: bug, newick tree

#25 - For trees over 5000 leaf nodes it gets laggy.

Issue - State: open - Opened by mooreryan almost 7 years ago - 2 comments
Labels: enhancement, usability

#8 - Inner node dots should be able to show bootstrap support

Issue - State: closed - Opened by seanmcallister almost 7 years ago - 1 comment
Labels: enhancement, tree styling