Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / monarch-initiative/monarch-app issues and pull requests

#951 - Update mi.org/publications page

Issue - State: open - Opened by sagehrke 9 days ago
Labels: good first issue, frontend, UI Developer

#950 - Remove Association Counts from Node Page Overview

Pull Request - State: open - Opened by varun-divya 9 days ago - 2 comments

#949 - Remove association counts from node page overview

Issue - State: open - Opened by kevinschaper 9 days ago
Labels: UI Developer

#948 - Missing object_taxon and object_taxon_label in some raw data files

Issue - State: open - Opened by nickzren 17 days ago - 2 comments

#945 - Allow truncating SVG in AppNodeText

Pull Request - State: open - Opened by ptgolden 22 days ago - 2 comments

#944 - When serializing nodes for links, only include small subset of data

Pull Request - State: closed - Opened by ptgolden about 1 month ago - 4 comments

#943 - Additional phenogrid fixes

Pull Request - State: closed - Opened by ptgolden about 1 month ago - 6 comments

#942 - Move Carlo to UNC; add Patrick

Pull Request - State: closed - Opened by ptgolden about 1 month ago - 4 comments

#941 - Update publications through 2025-01-21

Pull Request - State: closed - Opened by ptgolden about 1 month ago - 2 comments

#940 - Fetched `resources.json` file goes to wrong location

Issue - State: open - Opened by ptgolden about 1 month ago

#939 - Split apart odd intersection-symbol IDs in bGee gene expression ingest

Issue - State: closed - Opened by kevinschaper about 1 month ago - 1 comment

#938 - Move Carlo from QMUL to UNC on mi.org/team page

Issue - State: closed - Opened by sagehrke about 1 month ago

#937 - Add medical action association table to UI (plus fixture & enum regen)

Pull Request - State: closed - Opened by kevinschaper about 1 month ago - 3 comments

#935 - Pytest seems to be failing in certain environments

Issue - State: closed - Opened by glass-ships about 1 month ago - 1 comment

#934 - API SSL cert expired

Issue - State: closed - Opened by oneilsh about 1 month ago - 1 comment

#933 - Create MIC Repository from cookiecutter-monarch-ingest

Issue - State: closed - Opened by amc-corey-cox about 2 months ago - 1 comment
Labels: enhancement, backend

#931 - Update mi.org/publications page with fall 2024 publications

Issue - State: closed - Opened by sagehrke 2 months ago - 2 comments

#930 - Update orthology association table

Pull Request - State: closed - Opened by kevinschaper 2 months ago - 2 comments

#929 - Add ZFIN curated orthology ingest

Issue - State: closed - Opened by kevinschaper 2 months ago - 1 comment

#927 - Update CONTRIBUTING.md with correct documentation links

Pull Request - State: closed - Opened by sagehrke 2 months ago - 2 comments

#926 - Add taxon labels to ncbi-gene ingest

Issue - State: open - Opened by kevinschaper 2 months ago

#925 - Update README.md with correct documentation

Pull Request - State: closed - Opened by sagehrke 2 months ago - 2 comments

#924 - https://monarchinitiative.org/NCBITaxon:559292 encounters error

Issue - State: open - Opened by caufieldjh 2 months ago - 1 comment

#923 - Investigate possible missing orthology

Issue - State: open - Opened by kevinschaper 3 months ago - 4 comments

#922 - Non-existent pages in documentation appear strangely

Issue - State: open - Opened by ptgolden 3 months ago
Labels: documentation

#921 - Add Phenogrid documentation to Monarch KG Tools docs

Issue - State: open - Opened by ptgolden 3 months ago

#920 - Remove spacy dependancy in pyproject.toml

Pull Request - State: closed - Opened by ptgolden 3 months ago - 2 comments

#919 - Update UI for MAxO

Issue - State: closed - Opened by kevinschaper 3 months ago

#916 - Error loading `dc:terms` node

Issue - State: open - Opened by ptgolden 3 months ago - 4 comments

#915 - Update monarch-app readme

Issue - State: closed - Opened by sagehrke 3 months ago - 1 comment

#914 - Add support for Solr group queries to Solr service

Pull Request - State: open - Opened by ptgolden 3 months ago - 4 comments

#913 - remove spacy dependancy in pyproject.toml

Pull Request - State: closed - Opened by madanucd 3 months ago - 7 comments

#912 - Entities with many subclasses load super slowly

Issue - State: closed - Opened by kevinschaper 3 months ago - 7 comments

#911 - Fix rendering association frequencies; use proper field for sorting them

Pull Request - State: closed - Opened by ptgolden 3 months ago - 3 comments

#910 - Sorting by frequency in disease to phenotype table not working correctly

Issue - State: closed - Opened by ptgolden 3 months ago - 6 comments

#909 - Add advanced mapping widget to ontology pages

Issue - State: open - Opened by matentzn 3 months ago

#908 - Eliminate use of v-html when rendering node names and descriptions

Pull Request - State: closed - Opened by ptgolden 3 months ago - 2 comments

#907 - move Moni & Harshad to alumni

Pull Request - State: closed - Opened by kevinschaper 3 months ago - 2 comments

#906 - Add zoom room redirects

Pull Request - State: closed - Opened by kevinschaper 3 months ago - 2 comments

#905 - Make new redirects for Monarch Zoom rooms

Issue - State: closed - Opened by sagehrke 3 months ago

#904 - Add species_context_qualifier, remove closure expansion on most qualifiers

Pull Request - State: closed - Opened by kevinschaper 3 months ago - 2 comments

#903 - Bump codecov/codecov-action from 4 to 5

Pull Request - State: open - Opened by dependabot[bot] 3 months ago - 1 comment
Labels: dependencies

#902 - HTML injection in phenogrid tooltips (and <AppNodeBadge> more generally)

Issue - State: closed - Opened by ptgolden 3 months ago - 9 comments

#901 - Show breadcrumbs section as a graph visualization

Issue - State: open - Opened by kevinschaper 3 months ago
Labels: UI Developer

#900 - Load HP-MP mappings into SSSOM Solr index at ingest build time

Issue - State: open - Opened by kevinschaper 3 months ago - 1 comment
Labels: ingest

#899 - Show name & logo of ontology on ontology term pages

Issue - State: open - Opened by kevinschaper 3 months ago
Labels: UI Developer

#898 - Include part_of relationships in hierarchy section

Issue - State: open - Opened by kevinschaper 3 months ago - 2 comments
Labels: backend

#897 - Make "NOT" more prominent on negated predicates

Issue - State: open - Opened by kevinschaper 3 months ago - 1 comment
Labels: UI Developer

#896 - Remove "null of null phenotypes" hover

Issue - State: closed - Opened by kevinschaper 3 months ago - 2 comments
Labels: UI Developer

#895 - FastAPI documentation does not seem to be populated

Issue - State: open - Opened by ptgolden 3 months ago

#893 - Update documentation

Pull Request - State: closed - Opened by ptgolden 3 months ago - 4 comments

#890 - Update to eslint.config.js

Pull Request - State: open - Opened by glass-ships 3 months ago - 6 comments

#889 - Move Moni to Alum on mi.org

Issue - State: closed - Opened by sagehrke 3 months ago
Labels: frontend

#888 - Turn kg-registry into the OBO for KGs

Issue - State: open - Opened by kevinschaper 3 months ago - 4 comments

#887 - phenogrid multi-compare display is out of frame after monarch-app v1.8.0

Issue - State: open - Opened by dpavam 4 months ago - 16 comments

#882 - SUPER: Review columns for all association tables

Issue - State: open - Opened by sagehrke 4 months ago

#881 - Update ortholog table column order

Issue - State: closed - Opened by sagehrke 4 months ago - 1 comment

#880 - Fix off by one error on association tables

Issue - State: open - Opened by sagehrke 4 months ago
Labels: good first issue

#873 - Better overview of x-species phenotypes

Issue - State: open - Opened by pnrobinson over 3 years ago
Labels: enhancement, good first issue, UI Developer

#872 - Number of models by species

Issue - State: closed - Opened by pnrobinson over 3 years ago - 1 comment
Labels: enhancement, Good for UI Hack Session

#871 - Clinical Synopsis

Issue - State: closed - Opened by pnrobinson over 3 years ago - 3 comments
Labels: good first issue

#870 - Enable ability to load a phenotypic profile from a Phenopacket, visualize as Phenogrid

Issue - State: open - Opened by monicacecilia almost 4 years ago - 2 comments
Labels: enhancement, question, UI Developer

#868 - Obsoletes should be clearly indicated in UI (and in API results)

Issue - State: open - Opened by nlharris about 4 years ago - 2 comments
Labels: good first issue, UI Developer

#866 - Text Annotator: Tweak user-facing language provide user feedback mechanism on recognized entities

Issue - State: open - Opened by jmcmurry about 4 years ago - 1 comment
Labels: UI Developer

#865 - Design a card that provides an overview of all models for each disease

Issue - State: open - Opened by jmcmurry over 5 years ago - 1 comment
Labels: UI Developer

#864 - Design a card that provides an overview of variants associated with a gene

Issue - State: open - Opened by jmcmurry over 5 years ago - 2 comments
Labels: UI Developer

#863 - Create a disease overview description card

Issue - State: open - Opened by jmcmurry over 5 years ago - 1 comment
Labels: enhancement, frontend, node-page-enhancement

#862 - Update oai-plugin

Issue - State: open - Opened by kevinschaper 4 months ago

#853 - Fix Monarch Mapping Commons build

Issue - State: closed - Opened by kevinschaper 4 months ago - 5 comments

#852 - Move BioGRID to modular ingest

Issue - State: closed - Opened by kevinschaper 4 months ago - 3 comments

#851 - Create Modular GO Annotation ingest

Issue - State: closed - Opened by kevinschaper 4 months ago - 2 comments

#843 - Modularize and update BGee ingest

Issue - State: open - Opened by amc-corey-cox 4 months ago - 4 comments

#841 - Add an option to show all phenotypes

Issue - State: open - Opened by jmcmurry over 3 years ago

#840 - Gene (causal) count is misleading

Issue - State: open - Opened by ValWood over 3 years ago - 2 comments

#822 - Better integrate phenotype set analyses within site

Issue - State: open - Opened by monicacecilia over 5 years ago - 1 comment

#820 - Move the Monarch KG Release process page to the Monarch-app documentation

Issue - State: open - Opened by sagehrke 5 months ago - 3 comments
Labels: good first issue

#818 - Refactor Koza writer to remove KGX assumptions

Issue - State: open - Opened by kevinschaper 5 months ago - 1 comment

#809 - Spacy git dependency breaks pypi deploy

Issue - State: closed - Opened by kevinschaper 5 months ago - 3 comments

#802 - Highlight cross species phenotype equivalents better in the UI

Issue - State: open - Opened by kevinschaper 5 months ago
Labels: enhancement, node-page-enhancement, UI Developer

#798 - Add MAXO Annotation ingest

Issue - State: closed - Opened by kevinschaper 6 months ago - 6 comments
Labels: ingest

#789 - Filter diseases by species in results page

Issue - State: closed - Opened by monicacecilia about 6 years ago - 9 comments

#788 - Add frequency bands to the Histopheno chart

Issue - State: open - Opened by monicacecilia 6 months ago - 2 comments
Labels: UI Developer

#786 - Add faceting/filtering to association endpoints

Pull Request - State: closed - Opened by kevinschaper 6 months ago - 3 comments

#770 - MaveDB (TODO: create issue)

Issue - State: open - Opened by amc-corey-cox 7 months ago - 4 comments