Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / molpopgen/fwdpy11 issues and pull requests
#1315 - More macos wheel pain
Issue -
State: open - Opened by molpopgen about 1 month ago
#1314 - Bump pypa/cibuildwheel from 2.17.0 to 2.18.1
Pull Request -
State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, github_actions
#1313 - bump pybind11 to 2.12.0
Pull Request -
State: closed - Opened by molpopgen about 1 month ago
#1312 - Merge main into dev
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1311 - Update docker action to only login for releases
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1310 - Bump actions/download-artifact from 4.1.4 to 4.1.7
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
- 3 comments
Labels: dependencies, github_actions
#1309 - deprecate asblack method
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1308 - Moving towards removing "requirements" files.
Issue -
State: open - Opened by molpopgen 2 months ago
#1307 - Update manual
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1306 - disable building C++ for tests in tests_with_cpp/ by default
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1305 - remove print statements from tests/
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1304 - deprecate redundant demography functions
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1303 - Disable compiling by default the C++ files only used by Python tests
Issue -
State: closed - Opened by molpopgen 2 months ago
- 1 comment
Labels: build system
#1302 - Docs to update
Issue -
State: closed - Opened by molpopgen 2 months ago
- 1 comment
Labels: documentation
#1301 - remove deprecations
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1300 - Deprecate redundant ways to initialize demography
Issue -
State: closed - Opened by molpopgen 2 months ago
- 3 comments
#1299 - Fix #1217
Pull Request -
State: closed - Opened by molpopgen 2 months ago
#1298 - Add Python access to demes.Graph from ForwardDemesGraph
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1297 - Add C++ ForwardGraph::demes_graph to get a string representation of the resolved graph
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1296 - valgrind cpp test suite
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1295 - Update Cargo.lock using cargo update
Pull Request -
State: closed - Opened by molpopgen 3 months ago
- 1 comment
#1294 - update demes-forward-capi to 0.5.0
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1293 - Access to internal demes.Graph
Issue -
State: closed - Opened by molpopgen 3 months ago
- 1 comment
Labels: demographic models, demes integration
#1292 - Deprecate TreeIterator
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1291 - remove setup.py
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1290 - Only push docker images for releases
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1289 - Changelog for 0.22.1
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1288 - remove options from setup.py
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1287 - doc updates
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1286 - try ciwheelbuild on macos-latest
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1285 - Tracking issue: doc updates
Issue -
State: closed - Opened by molpopgen 3 months ago
- 1 comment
Labels: documentation
#1284 - Move to scikit build for build backend
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1283 - macos wheels
Issue -
State: closed - Opened by molpopgen 3 months ago
- 2 comments
#1282 - Update workflow action versions
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1281 - Add cibuildwheel configuration
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1280 - format code using latest version of black
Pull Request -
State: closed - Opened by molpopgen 3 months ago
#1279 - Bump actions/download-artifact from 3.0.2 to 4.1.4
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
- 1 comment
Labels: dependencies, github_actions
#1278 - Bump baptiste0928/cargo-install from 2 to 3
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, github_actions
#1277 - Bump actions/download-artifact from 3.0.2 to 4.1.3
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
- 1 comment
Labels: dependencies, github_actions
#1276 - Bump styfle/cancel-workflow-action from 0.12.0 to 0.12.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies, github_actions
#1275 - Bump actions/cache from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies, github_actions
#1274 - Bump actions/download-artifact from 3.0.2 to 4.1.1
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
- 1 comment
Labels: dependencies, github_actions
#1273 - Mutation counting in Python API
Issue -
State: open - Opened by molpopgen 5 months ago
#1272 - Clear table collection indexes early each generation.
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1271 - Deprecate TableCollection.fs
Issue -
State: closed - Opened by molpopgen 5 months ago
- 1 comment
#1270 - Remove use of oldest-supported-numpy when building wheels.
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1269 - add pyarrow to requirements/docs.txt.
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1268 - Add hard assert on TreeSequence time units
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1267 - update change log
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1266 - add citation info
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1265 - Deprecate some options for exporting to tskit.
Pull Request -
State: closed - Opened by molpopgen 5 months ago
#1264 - bump upload/download artifact workflow action versions.
Pull Request -
State: closed - Opened by molpopgen 6 months ago
#1263 - Bump actions/setup-python from 4 to 5
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies, github_actions
#1262 - Bump actions/download-artifact from 3.0.2 to 4.1.0
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies, github_actions
#1261 - Bump actions/upload-artifact from 3 to 4
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 1 comment
Labels: dependencies, github_actions
#1260 - bump unsafe-libyaml
Pull Request -
State: closed - Opened by molpopgen 6 months ago
#1259 - Bump unsafe-libyaml from 0.2.7 to 0.2.10 in /rust/fp11rust
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
- 2 comments
Labels: dependencies, rust
#1258 - Test for warning needed?
Issue -
State: closed - Opened by molpopgen 7 months ago
- 1 comment
#1257 - Deprecate demes graph as argument to exporting to tskit
Issue -
State: closed - Opened by molpopgen 7 months ago
#1256 - Deprecate dict as valid type for model_params when exporting to tskit
Issue -
State: closed - Opened by molpopgen 7 months ago
- 2 comments
#1255 - Fix export to tskit when demographic models end in the past.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1254 - Clear CI caches
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1253 - Demes graphs with end times > 0
Issue -
State: closed - Opened by molpopgen 7 months ago
Labels: tskit
#1252 - Fix typo in docs.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1251 - Add time conversion functions to ForwardDemesGraph
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1250 - Need "how to cite" info
Issue -
State: closed - Opened by molpopgen 7 months ago
Labels: documentation
#1249 - Add tests of demes event timings.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1248 - Update msprime.simulate to msprime.sim_ancestry
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1247 - update change log
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1246 - Add CI step to check Python code formatting
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1245 - format all files with black
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1244 - streamline requirements files
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1243 - remove dependency on intervaltree
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1242 - Set time_units to generations when exporting to tskit.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1241 - start updating recapitation vignette
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1240 - Add example of adaptation to different optima.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1239 - Deprecate StrictAdditiveMultivariateEffects.
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1238 - add Python 3.12 to all Github work flows
Pull Request -
State: closed - Opened by molpopgen 7 months ago
#1237 - update change log
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1236 - Refactor PyDiploidGeneticValue as a Python class
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1235 - Warn when prune_selected = True can be a problem
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1234 - Merge dev into main
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1233 - Add stderr_output: error to doc/config.yml
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1232 - warnings for `prune_selected`
Issue -
State: closed - Opened by molpopgen 8 months ago
Labels: UI
#1231 - Deprecated behavior being used in manual
Issue -
State: closed - Opened by molpopgen 8 months ago
- 1 comment
Labels: documentation
#1230 - Need a simpler example of different optima in different demes.
Issue -
State: closed - Opened by molpopgen 8 months ago
Labels: documentation
#1229 - Genetic value API
Issue -
State: open - Opened by molpopgen 8 months ago
- 2 comments
Labels: C++ back end, UI
#1228 - Refine branch choice in add_mutation.
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1227 - merge dev
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1226 - Fix changelog version
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1225 - merge dev
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1224 - update change log
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1223 - Add manual section on invoking python with -Wd or -We
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1222 - Fix link to demes specification.
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1221 - Need a manual section on invoking Python
Issue -
State: closed - Opened by molpopgen 8 months ago
Labels: documentation
#1220 - Broken link in manual
Issue -
State: closed - Opened by molpopgen 8 months ago
Labels: documentation
#1219 - Deprecate use of None for a demographic model.
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1218 - use tskit.NODE_IS_SAMPLE instead of numerical value
Pull Request -
State: closed - Opened by molpopgen 8 months ago
#1217 - Moving optimum models and complex demography
Issue -
State: closed - Opened by molpopgen 8 months ago
- 8 comments
Labels: UI
#1216 - bump demesdraw in requirements/development.txt
Pull Request -
State: closed - Opened by molpopgen 8 months ago