molpopgen/fwdpp issues and pull requests

#100 - Eliminate inheritance hierarchies for mutation and gamete

Issue - State: open - Opened by molpopgen almost 7 years ago - 2 comments
Labels: API, placeholder/idea

#99 - placeholder: different way to do pleiotropic effects

Issue - State: closed - Opened by molpopgen almost 7 years ago - 4 comments
Labels: placeholder/idea

#98 - Remove separate types for custom deleters

Issue - State: closed - Opened by molpopgen almost 7 years ago
Labels: enhancement, API

#97 - Unify handling of fixations.

Issue - State: open - Opened by molpopgen almost 7 years ago - 1 comment
Labels: enhancement, API

#96 - update_mutations_n doesn't record fixation times of selected mutations

Issue - State: closed - Opened by molpopgen almost 7 years ago
Labels: bug

#95 - Infinite site mutation

Pull Request - State: closed - Opened by molpopgen about 7 years ago - 2 comments
Labels: enhancement, API, new feature

#94 - fix operator== for mutation types

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: bug

#93 - refactor fwdpp::generalmut and fwdpp::generalmut_vec to use (s,h) tuples

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#92 - Add ability to serialize population containers in chunks.

Issue - State: closed - Opened by molpopgen about 7 years ago - 1 comment
Labels: placeholder/idea

#91 - Mutation types have incorrect `operator==`

Issue - State: closed - Opened by molpopgen about 7 years ago
Labels: bug

#90 - Refactor serialization code to use argument-dependent lookup (ADL).

Pull Request - State: closed - Opened by molpopgen about 7 years ago - 1 comment
Labels: enhancement, API

#89 - remove outdated test code

Pull Request - State: closed - Opened by molpopgen about 7 years ago

#88 - Change namespace

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: documentation, API

#87 - Change namespace from `KTfwd` to `fwdpp`. About time, right?

Issue - State: closed - Opened by molpopgen about 7 years ago

#86 - remove namespace KTfwd::experimental. Resolves #85.

Pull Request - State: closed - Opened by molpopgen about 7 years ago

#85 - Remove namespace `KTfwd::experimental`

Issue - State: closed - Opened by molpopgen about 7 years ago

#84 - Mutation functions with diploids

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#83 - Remove deprecated api

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: API

#82 - Streamline type traits

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#81 - Examples should illustrate concepts rather than simulation models

Issue - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, documentation

#80 - Support diploid-dependent mutation models

Issue - State: closed - Opened by molpopgen about 7 years ago - 1 comment
Labels: enhancement, API, new feature

#79 - Fitness function scaling

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#78 - Get rid of "scaling" term in fitness functions call operator

Issue - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#77 - Generalized rec rate variation

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: API, new feature

#76 - Example program in dev needs reversion

Issue - State: closed - Opened by molpopgen about 7 years ago - 1 comment

#75 - Refactor rec policies

Pull Request - State: closed - Opened by molpopgen about 7 years ago
Labels: enhancement, API

#74 - Allow for "empty" recombination callbacks

Issue - State: closed - Opened by molpopgen about 7 years ago - 1 comment

#73 - Mutation types should supply functions to generate new objects

Issue - State: closed - Opened by molpopgen about 7 years ago - 1 comment
Labels: enhancement, API

#72 - candidate changes to site_depdendent_genetic_value

Pull Request - State: closed - Opened by molpopgen over 7 years ago - 1 comment

#71 - guard against repeating fixations in sample when removeFixed is false

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#70 - Fix multilocus sugar sampling

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#69 - Multilocus population object has dangerous default behavior.

Issue - State: closed - Opened by molpopgen over 7 years ago - 1 comment
Labels: bug, API

#68 - Streamline serialization API

Issue - State: closed - Opened by molpopgen over 7 years ago
Labels: API

#67 - Reduce memory footprint of generalmut and generalmut_vec

Issue - State: closed - Opened by molpopgen over 7 years ago
Labels: enhancement, performance, API

#66 - do not check that mutation keys are sorted if gamete is extinct

Pull Request - State: closed - Opened by molpopgen over 7 years ago
Labels: bug

#65 - Fix popbase forwarding constructor

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#64 - check that mutation keys are sorted

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#63 - Fix unused variable warning

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#62 - construct gametes from tuples

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#61 - Test builds with c++14. Allow examples to be built without libsequence.

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#60 - Test different GCC versions on Travis

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#59 - Construct types with tuples

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#58 - Fix unit test tail gcc5

Pull Request - State: closed - Opened by molpopgen over 7 years ago
Labels: bug

#57 - Simplify extensions regions

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#56 - Allow construction of populations from user data

Pull Request - State: closed - Opened by molpopgen over 7 years ago
Labels: enhancement, API

#55 - Streamline mutation and recombination

Pull Request - State: closed - Opened by molpopgen over 7 years ago

#54 - Merge mutation and recombination

Issue - State: closed - Opened by molpopgen over 7 years ago
Labels: enhancement, performance

#53 - Simplify extensions/regions.hpp.

Issue - State: closed - Opened by molpopgen over 7 years ago
Labels: enhancement, API

#52 - fwdpp fails internal test for yosemite macOs

Issue - State: closed - Opened by tmozgach over 7 years ago - 4 comments

#51 - fwdpp fails internal tests. New gsl.

Issue - State: closed - Opened by tmozgach over 7 years ago - 5 comments

#50 - GSLrng_t should have deleted copy constructor

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment

#49 - Update additive_diploid and multiplicative_diploid to facilitate calculation of trait values vs. fitness

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment
Labels: enhancement, API

#48 - Make multi-locus/region API for recombination more flexible

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment
Labels: enhancement, API

#47 - Add locus boundary info to multilocus population type

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment
Labels: enhancement

#46 - Refactor KTfwd::traits

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment
Labels: enhancement, API

#45 - Fitness function dispatch could use improvement

Issue - State: closed - Opened by molpopgen almost 8 years ago - 1 comment
Labels: enhancement, API

#44 - OSX/clang compatibility broken by "mutation keys return pair of key/count in sampler, to aid downstream filtering"

Issue - State: closed - Opened by ilovezfs about 8 years ago - 19 comments

#43 - Error in adding fixations to "multi-locus" sims in "sugar" layer

Issue - State: closed - Opened by molpopgen over 8 years ago - 1 comment
Labels: bug

#42 - Refactor use of intermediate containers during recombination/mutation

Issue - State: closed - Opened by molpopgen over 8 years ago - 1 comment
Labels: performance

#41 - Bug in KTfwd::fwdpp_internal::gamete_cleaner for "multi-locus" simulations.

Issue - State: closed - Opened by molpopgen over 8 years ago - 3 comments
Labels: bug

#40 - Multilocus sampling returns containers w/wrong sizes

Issue - State: closed - Opened by molpopgen almost 9 years ago - 1 comment
Labels: bug

#39 - Improper dispatch in sugar layer sampling functions

Issue - State: closed - Opened by molpopgen almost 9 years ago - 1 comment
Labels: bug

#38 - swap_pops doesn't update pop'n sizes vector

Issue - State: closed - Opened by molpopgen almost 9 years ago - 1 comment
Labels: bug

#37 - fixations in KTfwd::sample_separate

Issue - State: closed - Opened by molpopgen almost 9 years ago - 1 comment
Labels: bug

#36 - Fixations not sorted in output from "sugar" sampling functions.

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment
Labels: bug

#35 - sugar/serialization.hpp

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment
Labels: bug

#34 - Fitness function call incorrect for multi locus simulations

Issue - State: closed - Opened by molpopgen about 9 years ago - 3 comments
Labels: bug

#33 - examples documentation link broken in README

Issue - State: closed - Opened by rossibarra about 9 years ago - 1 comment

#32 - Dispatch to gamete_cleaner is not working properly.

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment
Labels: bug

#31 - haplotype_dependent_fitness doesn't pass mutations along

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment

#30 - Serializing generalmut<N> and generalmut_vec

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment
Labels: bug

#29 - Bug in sampling

Issue - State: closed - Opened by molpopgen about 9 years ago - 1 comment
Labels: bug

#28 - Allow sugar/poptypes to be constructed with diploids/gametes/mutations/etc.

Issue - State: closed - Opened by molpopgen over 9 years ago - 5 comments
Labels: enhancement, API

#27 - Odd sample sizes

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: bug

#26 - Incorrect use of std::lower_bound

Issue - State: closed - Opened by molpopgen over 9 years ago - 2 comments
Labels: bug

#25 - Improve tutorial for multilocus API

Issue - State: closed - Opened by molpopgen over 9 years ago - 3 comments
Labels: documentation

#24 - Improve API for gamete_lookup_table

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: enhancement

#23 - Add "one-stop-shop" sugar header

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: enhancement

#22 - Add hooks for boost::serialization for "sugar" types

Issue - State: closed - Opened by molpopgen over 9 years ago - 3 comments
Labels: enhancement

#21 - Reorganize code

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: enhancement

#20 - when the RNG returns 0

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: bug

#19 - Update tutorial for multilocus simulations

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: enhancement

#18 - boost::python compatibility

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment

#17 - Likely bug in "sugar" code.

Issue - State: closed - Opened by molpopgen over 9 years ago - 3 comments
Labels: bug

#16 - sugar1_custom.cc

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment

#15 - Make sample_diploid more generic

Issue - State: closed - Opened by molpopgen over 9 years ago - 1 comment
Labels: enhancement, API

#14 - Metapopulation performance

Issue - State: closed - Opened by molpopgen over 9 years ago - 2 comments
Labels: enhancement

#13 - Assertion failed for small # of generation in Python examples

Issue - State: closed - Opened by vancleve almost 10 years ago - 16 comments

#12 - common_ind.hpp

Issue - State: closed - Opened by molpopgen almost 10 years ago - 1 comment

#11 - Boost.python example in 0.3.0

Issue - State: closed - Opened by molpopgen almost 10 years ago

#10 - position policy was requiring an argument and creating a compilation err...

Pull Request - State: closed - Opened by vancleve almost 10 years ago - 1 comment

#9 - ready link to examples

Issue - State: closed - Opened by rossibarra almost 10 years ago - 1 comment

#8 - minor bug in fitness_models.hpp

Issue - State: closed - Opened by alexnater almost 10 years ago - 2 comments

#7 - Metapopulation bug #3

Issue - State: closed - Opened by molpopgen almost 10 years ago - 1 comment

#6 - Metapopulation bug #2

Issue - State: closed - Opened by molpopgen almost 10 years ago - 2 comments

#5 - Metapopulation bug

Issue - State: closed - Opened by molpopgen almost 10 years ago - 1 comment

#4 - Naive install fails

Issue - State: closed - Opened by richelbilderbeek about 10 years ago - 2 comments

#3 - makefile edit in examples

Pull Request - State: closed - Opened by rossibarra about 10 years ago - 1 comment

#2 - Fixed compiler warning, improved doc, ignore generated file

Pull Request - State: closed - Opened by richelbilderbeek about 10 years ago

#1 - gsl error: number of events must be a positive integer

Issue - State: closed - Opened by rossibarra almost 11 years ago - 4 comments

GitHub / molpopgen/fwdpp issues and pull requests